mRNA_H-paniculata_contig6914.14844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6914.14844.1
Unique NamemRNA_H-paniculata_contig6914.14844.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: D8LTJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTJ9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.740e-17
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWLQEDD 117
            GASHHFWTHPSKPTDSPD+V+AR +IWNQ+TAWL EDD
Sbjct:  522 GASHHFWTHPSKPTDSPDIVKARHVIWNQVTAWLGEDD 559
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: A0A7S3HIP1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIP1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.650e-10
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWL 105
            GASHHFWTHPS PTD+  V +ARQ IW Q++AWL
Sbjct:  460 GASHHFWTHPSLPTDAAPVNEARQAIWTQVSAWL 493
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: A0A0L0GE81_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GE81_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 6.830e-10
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWLQEDD 117
            GASHH WTHPSKPTDS  V  AR+ IW ++T WL+ DD
Sbjct:  473 GASHHAWTHPSKPTDSVYVKAAREAIWLKVTQWLEMDD 510
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: A0A7S1DAX7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAX7_CYCTE)

HSP 1 Score: 58.9 bits (141), Expect = 6.010e-9
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWLQEDDEV 123
            GASHHFWTHPS PTD+  +  AR +I+ +I  WL+ED +V
Sbjct:  311 GASHHFWTHPSLPTDTQAIKDARDLIYLKIMEWLREDSDV 350
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: A0A7S0TTN3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTN3_HEMAN)

HSP 1 Score: 58.5 bits (140), Expect = 8.330e-9
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWLQ--EDDEVG 126
            GASHHFWTHP++PTDSP+VV AR+ I   +  WL     DE+G
Sbjct:  467 GASHHFWTHPARPTDSPEVVMARKRIAMAVDRWLSMASTDELG 509
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: A0A7S0GI28_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GI28_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.100e-8
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWLQE 111
            GASHHFWTH  K  DS ++VQ+R++I+ Q++AWL+E
Sbjct:  329 GASHHFWTHAVKDDDSEEMVQSREVIYEQVSAWLKE 364
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: A0A7S0W8A9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W8A9_9CRYP)

HSP 1 Score: 57.4 bits (137), Expect = 2.130e-8
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWL 105
            GASHHFWTHP++PTDSP+VV+AR+ I   +  WL
Sbjct:  478 GASHHFWTHPARPTDSPEVVRARKRIGMAVDRWL 511
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: A0A7S0WWE3_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WWE3_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-7
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWLQE 111
            GASHH WTHP KPTD+ +V++AR+ I  Q+  WL +
Sbjct:  463 GASHHQWTHPPKPTDTAEVIEAREAITEQLNKWLDD 498
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: A0A7S2REI7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2REI7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.220e-7
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWLQED 114
            GASHHFWTH  K +DS  V  AR+ I  Q+TAWL ED
Sbjct:  225 GASHHFWTHEVKESDSESVNTAREKIHEQVTAWLDED 261
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BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Match: A0A830HUC0_9CHLO (Uncharacterized protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HUC0_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:    4 GASHHFWTHPSKPTDSPDVVQARQIIWNQITAWLQE 111
            GASHH WTHPS+P DSP +V+AR  I   +  WL +
Sbjct:  576 GASHHAWTHPSRPGDSPSLVKARAAISELVETWLSQ 611
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6914.14844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LTJ9_ECTSI1.740e-1784.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3HIP1_9STRA3.650e-1070.59Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0L0GE81_9EUKA6.830e-1065.79Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S1DAX7_CYCTE6.010e-957.50Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0TTN3_HEMAN8.330e-958.14Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0GI28_9STRA2.100e-858.33Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S0W8A9_9CRYP2.130e-864.71Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0WWE3_9CHLO1.390e-755.56Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S2REI7_9STRA2.220e-762.16Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A830HUC0_9CHLO1.710e-655.56Uncharacterized protein n=2 Tax=Pycnococcus provas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6914contigH-paniculata_contig6914:700..834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D8LTJ9
Preferred namePRSS16
KEGG koko:K09649
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005773,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009057,GO:0012505,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0031410,GO:0031982,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0097708,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsKOG2182@1,KOG2182@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930829.9224708-CDS-H-paniculata_contig6914:699..8341622930829.9224708-CDS-H-paniculata_contig6914:699..834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6914 700..834 -
1691481471.5036302-CDS-H-paniculata_contig6914:699..8341691481471.5036302-CDS-H-paniculata_contig6914:699..834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6914 700..834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6914.14844.1prot_H-paniculata_contig6914.14844.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6914 700..834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6914.14844.1

>prot_H-paniculata_contig6914.14844.1 ID=prot_H-paniculata_contig6914.14844.1|Name=mRNA_H-paniculata_contig6914.14844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
AGASHHFWTHPSKPTDSPDVVQARQIIWNQITAWLQEDDEVGRA*
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mRNA from alignment at H-paniculata_contig6914:700..834-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6914.14844.1 ID=mRNA_H-paniculata_contig6914.14844.1|Name=mRNA_H-paniculata_contig6914.14844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig6914:700..834- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGTGCCTCGCACCACTTTTGGACACACCCTTCGAAGCCCACTGACTC
CCCGGATGTAGTCCAGGCGCGACAGATCATCTGGAATCAGATCACCGCGT
GGTTGCAAGAAGACGATGAAGTAGGGAGAGCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6914:700..834-

>mRNA_H-paniculata_contig6914.14844.1 ID=mRNA_H-paniculata_contig6914.14844.1|Name=mRNA_H-paniculata_contig6914.14844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig6914:700..834- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGTGCCTCGCACCACTTTTGGACACACCCTTCGAAGCCCACTGACTC
CCCGGATGTAGTCCAGGCGCGACAGATCATCTGGAATCAGATCACCGCGT
GGTTGCAAGAAGACGATGAAGTAGGGAGAGCTTGAGCAGGTGCCTCGCAC
CACTTTTGGACACACCCTTCGAAGCCCACTGACTCCCCGGATGTAGTCCA
GGCGCGACAGATCATCTGGAATCAGATCACCGCGTGGTTGCAAGAAGACG
ATGAAGTAGGGAGAGCTTGA
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