mRNA_H-paniculata_contig690.14826.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig690.14826.1
Unique NamemRNA_H-paniculata_contig690.14826.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig690.14826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig690contigH-paniculata_contig690:11854..13975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size184
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.9927197-CDS-H-paniculata_contig690:11854..118881622930826.9927197-CDS-H-paniculata_contig690:11854..11888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig690 11855..11888 -
1691481470.1647995-CDS-H-paniculata_contig690:11854..118881691481470.1647995-CDS-H-paniculata_contig690:11854..11888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig690 11855..11888 -
1622930827.009895-CDS-H-paniculata_contig690:13826..139751622930827.009895-CDS-H-paniculata_contig690:13826..13975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig690 13827..13975 -
1691481470.1764796-CDS-H-paniculata_contig690:13826..139751691481470.1764796-CDS-H-paniculata_contig690:13826..13975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig690 13827..13975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig690.14826.1prot_H-paniculata_contig690.14826.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig690 11855..13975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig690.14826.1

>prot_H-paniculata_contig690.14826.1 ID=prot_H-paniculata_contig690.14826.1|Name=mRNA_H-paniculata_contig690.14826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
GDQHSATKYLVFSPTDGDLASHMVGMMSTFVLSVALGRVFVHDWNSRTAQ
CGATYDELFMP
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mRNA from alignment at H-paniculata_contig690:11854..13975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig690.14826.1 ID=mRNA_H-paniculata_contig690.14826.1|Name=mRNA_H-paniculata_contig690.14826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2122bp|location=Sequence derived from alignment at H-paniculata_contig690:11854..13975- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGATCAGCACTCGGCAACCAAGTACCTCGTGTTTTCTCCGACGGACGG
TGATCTCGCTAGTCACATGGTGGGGATGATGAGCACCTTCGTCTTGTCCG
TAGCCCTGGGGAGGGTCTTCGTTCACGACTGGAACTCAAGAACGGCCCAG
TAAGTCTCAGGCGCAGTGTTCGCGCAATGAATATATTTATAGAAAGGTCG
TGCATCTTGCTACCTGTCGCCTTTGAAGGCCTGGTAGGTTATTTTCAATG
GCGTGAATGAGGCCGCAGACGATTCTCGTATGTGATGCTGTACACCACCG
AATTCTTCAACTCTCGGGAGGCGCCTTGTAGCCGCCCAGTGGCTTGTTGT
GCTTTGTTCAGTCTATTGCGAAACGAAGACTCGGTAGACAGCTCAAATAC
GGGTGCTGTTCATCGCCGGGGTGGTGAGAATAGAGAGAGTAGAGGACCGC
AACATGGTACTTTTTATCCCAATTGAGCGTTTCAGTAATAGCATCATTTA
TGTTCGTTTGTTTTTCCGGTCGCCATGACAAGGTATGGTATCATGGTATC
ATGGTATCATGGGGCGAGGAAAAAGAGAGGATACACCAATCCGCGACACC
CGAAAGGATTGCACTATGAAATTCATATATTCAAGAAATGCCAAGTAGTG
AGGTGGATTCATGAAGTATTATTTGGTCAGACGGTCTTACCTTTCCCTTT
CGTAGCAAATCTTCCTCGAAAGTCCGAGTACGGGCTGGGTCGGCCAAGAA
ACCCATCATGTATCGGACGATCGTATTCTCTCAAATACTGCGATTCATCT
CAAAATGAAAGCATTGTTGCAATCGGCCAATCGACGCGCATGTACAGAGC
CACGTGACTAGCTGATTGGAGTGGGTTTTACAAATTTGACGTTAGCTGCC
CAACCAGCGTGTAAGGAAGTAGGTATTGAAACCGTTTTGTTTTTGCGACG
CAATTAGAAGCATATGGTACAGAAATGCCTGGATCAGGGACAGCCCAAGC
CTACGCGCTGCGACATGGCTACGAGCGTGCCAGTAGGTCAGCAGTGGTAG
AGGGCCTCACTCCCTGCGATTATGCACGACAAGGTCAAGGAGACGTATCG
GTTAAAGCTGATATACACTGGTCCGAGACACAAGATTAAGGTGGTGCAAC
CTCCGCTTTTTGTACCAGTTGGTACCCGTAAGGATAACTCTATAGATCTT
GACTTCACAATTTAAGGTTCATTTCATATGATGTAACAACGGTATCGGTT
TCACTTCGAAGGGGCTATTGTAAACTGCATGCTGCCAACGACAAATCTCC
GCCAAATATATCTTTCCCGCTGGCCTGGATCTCGATGCGAGCGTCAGCGC
AATTTCCCTCGCAATATTGCACAATATGTACACAACCGTAAAAGACACTG
TAGAAAATCGGGATGCCCCGGCTCAATTTGTCAATTTTTGTCCTGGAGTT
TTGACACGCGACCTGCAACACACTCTCCGCGACATTCGAATAAGATCGCC
GTTTTTTTTTCATCAGGTTATGGCCGACTTTCGATCGACGTGGGTGTTTC
GTTTGACCGTAGTTTGATGGAAAAAACAAAACAAATTACCTTGTTCGAAT
GTCTCGGCGAGTGTGTTGCAAATCACGTGCCAAAACTTCAGGAAAATATT
CGGTAAATTGAGCTGAGCATCCCGATTCTCTCGTTTTAAGCGTGTCTTGA
TCGGTCCAGCCTGTACATATTGTGTATTATATGTGGAGGAATACCAAGGG
ATGCTTCGGCCCACACAAGCGTTCGACCTACCGGTACGGTCACATCGCCG
CATATCTTTCGATATAATGCATGGACAAGTGCAACCCTTTGCTTGAAGGG
CGTTGTTGACTCTATCAATGACGGAACTTGTGCATCTCAGGTTCCCCTTG
CCCTCGCATGTGATCCCGTTAGGGACATCGCAATAGATGTCTGAAAACGA
CGTCACACACATTGTTAAATAGCTGCTCAACAACTAAAAAATATCCTCCC
ATGCACCCGACCTCCCCTCCCTCGCGCACCCCCTCCCCGTAACGACAACG
CCTACCCTTATGGGTTGCTTGCTGTAATGGTGTTTAGGTGTGGGGCGACT
TACGATGAATTGTTCATGCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig690:11854..13975-

>mRNA_H-paniculata_contig690.14826.1 ID=mRNA_H-paniculata_contig690.14826.1|Name=mRNA_H-paniculata_contig690.14826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig690:11854..13975- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGATCAGCACTCGGCAACCAAGTACCTCGTGTTTTCTCCGACGGACGG
TGATCTCGCTAGTCACATGGTGGGGATGATGAGCACCTTCGTCTTGTCCG
TAGCCCTGGGGAGGGTCTTCGTTCACGACTGGAACTCAAGAACGGCCCAG
GGGATCAGCACTCGGCAACCAAGTACCTCGTGTTTTCTCCGACGGACGGT
GATCTCGCTAGTCACATGGTGGGGATGATGAGCACCTTCGTCTTGTCCGT
AGCCCTGGGGAGGGTCTTCGTTCACGACTGGAACTCAAGAACGGCCCAGT
GTGGGGCGACTTACGATGAATTGTTCATGCCAGTGTGGGGCGACTTACGA
TGAATTGTTCATGCCA
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