mRNA_H-paniculata_contig69.14823.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig69.14823.1
Unique Name	mRNA_H-paniculata_contig69.14823.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: D8LB66_ECTSI (Cyclin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB66_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 2.490e-139
Identity = 270/420 (64.29%), Postives = 289/420 (68.81%), Query Frame = 1

Query:    1 MNIDIGSLRCMAPSLGIPPHRHYDPSDLQDAGLRLEWAKFLFRAGYRLRYPQASDTFLPLPQCRTTGTAILLFHRFLIQERVGKHQKSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTRTTRDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRALSAPPPAVACAAIRMATRIHGSERRLRWFSPPRXXXXXXXXXXRGPTGHGDIV---DMSGVSGSGNDRSGGEDVRQGLVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETEPEKSVTPARVETAGVKTRLPSEPEPELEAVRDGGSAASGSPSCAVTDLSDAAAVG--GSAGGVRGNSDNGHIAAENTMMPWWVLFDARDEEVELVCSELLALYRAQGWG 1245
            M ID+GSLRC+AP+LGIPP+RHYDPSD +DA LRLEWAK LFRAGYRLR+PQ            TTGTA+LLFHRFLIQERVGKH++SRDVILTTCLFLAGKVTEAPRRLRDVINVLHML  T +DEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRL RAATRTAWGL NDVLFCPRALSAPPPAVACA IRMA R+HG +RRLRW+SPP           R     GD +   D+  V     DR  G     G   XXXXXXXXXXXXXXXXXXXXXXXXXX    X     +  VT                       V D G  +      A    +D   VG   S GG  G+ D G    E    PWW LFDARDEEVELVCSELLALYRA G G
Sbjct:    1 MEIDVGSLRCVAPALGIPPNRHYDPSDAEDAALRLEWAKVLFRAGYRLRFPQG-----------TTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLNSTGQDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLDRAATRTAWGLANDVLFCPRALSAPPPAVACAVIRMAARVHGGDRRLRWYSPP-----VQKISKRRREEEGDAIGGRDLGKVESGMGDRGRGG----GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGLXXXVNGQHVVTXXXXXXXXXXXXX-------XXTVGDHGGISGNQGGFAGG--ADVLVVGVKSSDGGRGGDEDQGD---ETATKPWWRLFDARDEEVELVCSELLALYRAHGDG 388

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: A0A835YQW0_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW0_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.830e-56
Identity = 111/227 (48.90%), Postives = 134/227 (59.03%), Query Frame = 1

Query:   10 DIGSLRCMAPSLGIPPHRHYDPSDLQDAGLRLEWAKFLFRAGYRLRYPQASDTFLPLPQCRTTGTAILLFHRFLIQERVGKHQKSRD-VILTTCLFLAGKVTEAPRRLRDVINVLHMLTRTTRD---EPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRALSAPPPAVACAAIRMATRIHGSERRLRWFS 678
            ++ +LR ++P+L          S  +D   R  W   +FRAG+RLRYPQ            TT TAI+LFHRF   E     Q+ R  V+L TCLFLAGKV E PRRLRDVIN LH+          EPP LD+AYW MKE++VE EQ +LR I F +D   PYRLLLNYARSLRL R   + AWG VND LF P AL   PP +ACAAI +A R+      L W +
Sbjct:    9 NLAALRHLSPALSSGATSRSGGSQ-EDLRRRRGWTAAMFRAGHRLRYPQ-----------ETTSTAIILFHRFCESEAQALRQRDRRLVVLVTCLFLAGKVRETPRRLRDVINCLHVTAAEPGGGAVEPPRLDQAYWDMKEQVVECEQAVLRIIGFDMDGEHPYRLLLNYARSLRLSRELVQLAWGFVNDFLFIPSALELSPPTLACAAISLAARLTDELNDLNWIT 223

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: W7TSF1_9STRA (Cyclin-l1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSF1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.910e-26
Identity = 80/238 (33.61%), Postives = 110/238 (46.22%), Query Frame = 1

Query:   97 LRLEWAKFLFRAGYRLRYPQASDTFLPLPQCRTTGTAILLFHRFLIQERVGKHQKSR--DVILTTCLFLAGKVTEAPRRLRDVINVLHM----------------------------------------------------LTRTTRDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRA-LSAPPPAVACAAIRMATRI 645
            +R +  + L  AG RLR PQ            T  TA L+FHRF     + ++ ++R  DV+LTTCLFLA KV E PRR+RD IN +++                                                    L R+ +     LD+ YW +KE +V+ EQ++LR + F ++    YRLLLNYARSLR        AW L+ND LF P   L+ P  A A AA+ +A R+
Sbjct:   34 IRQDSVRVLLDAGRRLRLPQ-----------ETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRL 260

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: A0A7S0I6B2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I6B2_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 3.840e-23
Identity = 63/175 (36.00%), Postives = 94/175 (53.71%), Query Frame = 1

Query:  118 FLFRAGYRLRYPQASDTFLPLPQCRTTGTAILLFHRFLIQERVGKHQKSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTRTTRDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRALSAPPPAVACAAIRMATR 642
            FL  AG +LR PQ S             TAI+ +HRF  ++    + + R  I TTCLFLAGKV E P++++DV+   +         P    K +W +KE I+  E++LL+T++F +     YR LL Y +S++  R   + AW  +ND L    AL  PP  VA +A+ +A+R
Sbjct:   88 FLQEAGQKLRLPQLS-----------IATAIVFYHRFYSRKSYDSYDRFR--IATTCLFLAGKVEETPKKIKDVVIEAYKAQHQKPTGPEPESKEFWALKEEILVCERILLQTLDFDLTVEHAYRPLLAYVKSIKGTRDLAQVAWNFINDSLRTTIALQYPPRCVAASAVHLASR 249

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: A0A1V9YAW3_9STRA (Cyclin-related protein FAM58A-like isoform 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAW3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.150e-23
Identity = 60/152 (39.47%), Postives = 87/152 (57.24%), Query Frame = 1

Query:  196 TGTAILLFHRFLIQERVGKHQKSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTRTTRDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRALSAPPPAVACAAIRMATRIHG 651
            T TA+LL HRF  Q+           I  +C+FLA K+TE PR+LRD++NV + +   T    P+    Y  MKER+++ EQ +LR + F++D   PY  LLNYA+ LR  RA  + A  L +D  + PR+LS   P +A A + +A  + G
Sbjct:   30 TTTAMLLSHRFYAQKSPQTFPFMD--IGASCIFLATKLTEKPRKLRDIMNVAYSIAHKTNSPVPV-GSVYTAMKERLLDAEQNILRVLRFELDMDLPYMYLLNYAKFLRCSRATVQVALTLTSDFFYAPRSLSYDAPIIAAACLYVALSLVG 178

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: A0A0G4IYJ5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYJ5_PLABS)

HSP 1 Score: 102 bits (255), Expect = 1.890e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 1

Query:   73 PSDLQDAGLRLEWAKFLFRAGYRLRYPQASDTFLPLPQCRTTGTAILLFHRFLIQERVGKHQKSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTRTTRDEPPL-LDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRALSAPPPAVACAAIRMATRI 645
            P+D + + +R +    +   G RL+ PQ            T  TA  +FHRF  +E +  H      I  TCLF+AGK  E PRRLRDVIN ++       D PPL +   +W MKE ++E E+++LR I F VD   P+   +++ R LR           ++ND    P  L   P  +AC A+ +AT +
Sbjct:    3 PAD-EGSVIRFQATTLIQDVGIRLQVPQM-----------TIATAQTIFHRFFAKEPLADHDPMD--IAQTCLFVAGKSQETPRRLRDVINTVYRYRNP--DLPPLEVADPFWQMKEHLIESERLVLRVIAFDVDVVPPHAYAVHFLRDLRASNDLANCTLSILNDSCRIPLCLHYEPHVIACGAMYLATEL 178

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: A0A7S0PZF2_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PZF2_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 4.930e-21
Identity = 63/189 (33.33%), Postives = 93/189 (49.21%), Query Frame = 1

Query:  118 FLFRAGYRLRYPQASDTFLPLPQCRTTGTAILLFHRFLIQERVGKHQKSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTRTTRDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRALSAPPPAVACAAIRMATRIHGSERRLRWFSPP 684
            FL  +G +LR PQ            T  TAI+ +HRF   +    +   R  I TTCLFLA KV E P++L+DV+   + +    +  P    + +  +KERI+  E+VLL+T+ F +    PYR LL Y +S++  R   + AW  +ND L     L   P  V+ AA+ +A R         +  PP
Sbjct:   62 FLQESGQKLRLPQL-----------TIATAIVFYHRFFAHKSYEGYD--RFTIATTCLFLASKVEETPKKLKDVVTETYKIQNAPKAAPEPESQDFKDLKERILVSERVLLQTLGFDLTVEHPYRPLLAYVKSIQGTRDLAQVAWNFINDSLRTTICLQYAPRCVSAAAVALAARYLSDRHGTLYVLPP 237

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: A0A7S0J0B8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J0B8_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 1.370e-20
Identity = 62/175 (35.43%), Postives = 89/175 (50.86%), Query Frame = 1

Query:  118 FLFRAGYRLRYPQASDTFLPLPQCRTTGTAILLFHRFLIQERVGKHQKSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTRTTRDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRALSAPPPAVACAAIRMATR 642
            FL  +G +LR PQ            T  TAI+ +HRF   +        R  I TTCLFLA KV E P++L+DV+     +  T +  P    + +  +KERI+  E+VLL+T+ F +    PYR LL Y +S++  R   + AW  +ND L     L   P  V+ AA+ +A R
Sbjct:   64 FLQESGQKLRLPQL-----------TIATAIVFYHRFFAHKSYESF--CRFTIATTCLFLASKVEETPKKLKDVVIETFKIQNTPKPPPEPDSQEFKDLKERILVSERVLLQTLGFDLTVEHPYRPLLAYVKSIQGTRDLAQVAWNFINDSLRTTICLQYAPRCVSAAAVSLAAR 225

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: W4GAN4_9STRA (Cyclin N-terminal domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GAN4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.670e-20
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 1

Query:  196 TGTAILLFHRFLIQERVGKHQKSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTRTTRDEPPLLDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRALSAPPPAVACAAIRMA 636
            T TA++L HR+               I   C+FLA K+TE PR+LRDV+NV + +     + P      Y   KER+++ EQ +LR I F +D P PY+ LLN A+ L++ R   + A  L +D+ +  RAL  PP  +A ++I +A
Sbjct:   41 TSTAMVLAHRYFATHAAPHSFPQHVDIGAACIFLATKITEKPRKLRDVMNVAYCVAHNV-NTPVSTGHEYSAFKERLLDAEQHVLRAIRFDMDVPLPYQHLLNLAKLLQVSRVVVQIALTLASDLFYSARALEYPPHVIAASSIYLA 186

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BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Match: A0A2D4H7H0_MICLE (Uncharacterized protein (Fragment) n=3 Tax=Sauria TaxID=32561 RepID=A0A2D4H7H0_MICLE)

HSP 1 Score: 99.8 bits (247), Expect = 1.670e-20
Identity = 68/197 (34.52%), Postives = 101/197 (51.27%), Query Frame = 1

Query:   70 DPSDLQ-DAGLRLEWAKFLFRAGYRLRYPQASDTFLPLPQCRTTGTAILLFHRFLIQERVGKHQKSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLT--RTTRDEPPL-LDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLGRAAT--RTAWGLVNDVLFCPRALSAPPPAVACAAIRMATR 642
            D  DLQ +  LR+   + +  AG  LR PQ +             T  +LFHRF   +   KH  S +++   C+ LA K+ EAPRR+RDVINV H L   R  R   PL LD+ Y   K ++++ E+ +L+ + F V    P+++++ Y + L   R  T  +TAW  +ND L     +   P  +ACA I +A R
Sbjct:   42 DGLDLQSETDLRILGCELIQAAGILLRLPQVA-----------MATGQVLFHRFFYSKSFVKH--SFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRIKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDTLRTNVFVRFQPETIACACIYLAAR 225

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig69.14823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LB66_ECTSI	2.490e-139	64.29	Cyclin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB66_...	[more]
A0A835YQW0_9STRA	2.830e-56	48.90	Cyclin-like protein n=1 Tax=Tribonema minus TaxID=...	[more]
W7TSF1_9STRA	5.910e-26	33.61	Cyclin-l1 n=2 Tax=Monodopsidaceae TaxID=425072 Rep...	[more]
A0A7S0I6B2_9EUKA	3.840e-23	36.00	Hypothetical protein n=1 Tax=Phaeocystis antarctic...	[more]
A0A1V9YAW3_9STRA	4.150e-23	39.47	Cyclin-related protein FAM58A-like isoform 1 n=1 T...	[more]
A0A0G4IYJ5_PLABS	1.890e-21	33.85	Uncharacterized protein n=1 Tax=Plasmodiophora bra...	[more]
A0A7S0PZF2_9EUKA	4.930e-21	33.33	Hypothetical protein n=2 Tax=Coccolithus braarudii...	[more]
A0A7S0J0B8_9EUKA	1.370e-20	35.43	Hypothetical protein n=1 Tax=Calcidiscus leptoporu...	[more]
W4GAN4_9STRA	1.670e-20	36.73	Cyclin N-terminal domain-containing protein n=2 Ta...	[more]
A0A2D4H7H0_MICLE	1.670e-20	34.52	Uncharacterized protein (Fragment) n=3 Tax=Sauria ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig69	contig	H-paniculata_contig69:11728..17151 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	417.5
Seed ortholog evalue	7.1e-114
Seed eggNOG ortholog	2880.D8LB66
Hectar predicted targeting category	other localisation
EggNOG free text desc.	positive regulation of phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGs	COG5333@1,KOG0835@2759
Ec32 ortholog description	Cyclin-like
Ec32 ortholog	Ec-27_005020.1
COG Functional cat.	DKL
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	4
Model size	1245
Cds size	1245
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig69.14823.1	prot_H-paniculata_contig69.14823.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig69 11728..17151 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930826.2939746-CDS-H-paniculata_contig69:11727..11942	1622930826.2939746-CDS-H-paniculata_contig69:11727..11942	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69 11728..11942 -
1691481469.799313-CDS-H-paniculata_contig69:11727..11942	1691481469.799313-CDS-H-paniculata_contig69:11727..11942	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69 11728..11942 -
1622930826.3099537-CDS-H-paniculata_contig69:12011..12642	1622930826.3099537-CDS-H-paniculata_contig69:12011..12642	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69 12012..12642 -
1691481469.8093483-CDS-H-paniculata_contig69:12011..12642	1691481469.8093483-CDS-H-paniculata_contig69:12011..12642	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69 12012..12642 -
1622930826.3257275-CDS-H-paniculata_contig69:15961..16168	1622930826.3257275-CDS-H-paniculata_contig69:15961..16168	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69 15962..16168 -
1691481469.8171587-CDS-H-paniculata_contig69:15961..16168	1691481469.8171587-CDS-H-paniculata_contig69:15961..16168	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69 15962..16168 -
1622930826.3591232-CDS-H-paniculata_contig69:16959..17151	1622930826.3591232-CDS-H-paniculata_contig69:16959..17151	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69 16960..17151 -
1691481469.8250227-CDS-H-paniculata_contig69:16959..17151	1691481469.8250227-CDS-H-paniculata_contig69:16959..17151	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69 16960..17151 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig69:11728..17151-
coding sequence from alignment at H-paniculata_contig69:11728..17151-

protein sequence of mRNA_H-paniculata_contig69.14823.1

>prot_H-paniculata_contig69.14823.1 ID=prot_H-paniculata_contig69.14823.1|Name=mRNA_H-paniculata_contig69.14823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp
MNIDIGSLRCMAPSLGIPPHRHYDPSDLQDAGLRLEWAKFLFRAGYRLRY
PQASDTFLPLPQCRTTGTAILLFHRFLIQERVGKHQKSRDVILTTCLFLA
GKVTEAPRRLRDVINVLHMLTRTTRDEPPLLDKAYWTMKERIVEFEQVLL
RTINFQVDPPDPYRLLLNYARSLRLGRAATRTAWGLVNDVLFCPRALSAP
PPAVACAAIRMATRIHGSERRLRWFSPPRRKSGGGNKRRRGPTGHGDIVD
MSGVSGSGNDRSGGEDVRQGLVVVGGGDDPNGNGSTPSANNGSSTDGGGG
GGGGAETEPEKSVTPARVETAGVKTRLPSEPEPELEAVRDGGSAASGSPS
CAVTDLSDAAAVGGSAGGVRGNSDNGHIAAENTMMPWWVLFDARDEEVEL
VCSELLALYRAQGWG

mRNA from alignment at H-paniculata_contig69:11728..17151-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig69.14823.1 ID=mRNA_H-paniculata_contig69.14823.1|Name=mRNA_H-paniculata_contig69.14823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5424bp|location=Sequence derived from alignment at H-paniculata_contig69:11728..17151- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACATCGACATCGGATCGCTGCGGTGCATGGCTCCCTCCCTGGGCAT
CCCGCCCCACCGGCACTACGACCCCAGCGATCTTCAGGATGCTGGTTTGA
GACTTGAGTGGGCCAAGTTTCTCTTCAGGGCGGGCTACCGCCTTCGCTAC
CCTCAGGCGAGTGACACGTTTCTCCCTCTACCGCAGTGCCGGGTGGATTC
GGCCCGCCGCAGCGTAATGCTTTTGCAATGCTGAACTCGACTGGGTTTTT
TGGTCTGAACGGCTGTGTGAAAAGCACTCAAAGATGAATCCGATGCATCT
ACACTTGTCTTGCTCGGCAGCCTCCAATTTAAACCTTCCGTAATTTAGCA
GCTGCGCGGAACACGTTTATGGTCGTTGCGTTTGCCTTTTGTCTTTTGTA
GTCATGTACAGGGGTCTCGGAGGCTAGCGGGTGCTTGTGCTCCCCTGGGG
ATTCTCTTGCAATTGTGATTTGGACGATGGGCGTGGGTGGGGAGGGGGGG
TGTACTCATCAACATAATTATAACATGTAACATGCCAATGAGCGACAACG
TTCCTTTTTATGGACACGCATGCCTTGCGCTTGGCATCGCGTTTCCGCAA
GCTTCTTAGCAGAAGCACACTTGGGGGCCTCCTTATTTTGCAAGTCTTTA
CACCAAATTCCATGGTGAACCAAAAAAATTGTGACTGCCATGGCCAGCAA
CACGTTGGTAGTTATACCAGCCAACCGTTGACGATGCCCGCTCTCCTCCA
GTTGTTCGCACAAGCAAAGCGAGAAAACCCTGTGACATACCGCACATGTG
AAGAAAAAAAAAATCAACACCATTCGGTTAACGCCTGACAGATCAGAACT
ACCAGGATTCTCGTGGGCGTCCCCCTACGCACATACCGCCGCGCGAAGGC
AGCACCTCGCGTCGTCGCTGAATCCCCCCGTTTCCGGTGCGCCTGAATCC
TGACTGTGGCCCCCGTCTCTTGGGGGGCAGGAGACGACGGGAACTGCCAT
TCTTCTGTTTCATCGGTTCCTGATACAGGAACGAGTGGGTAAGCACCAGA
AAAGCCGAGACGTAATCCTGACGACCTGCCTGTTCCTAGCGGGTAAAGTG
ACGGAGGCACCACGGCGACTGAGAGATGTGATCAACGTGCTGCACATGCT
GACGCGCACCACCCGGGACGAGCCTCCTCTTCTTGATAAGGTATGGTGAA
ACGGGGAGGGGATTGATTGTGTATCTACGCATCTACGTGATCAAGTACTT
GGATCATTCAGTTGGTTGTTCCATGCAATTGTTCACCCTCCCCTATTGGT
CATGATTTAATTTTGCTGTTATGTGTAAACAACTGAATTTTGAAGTCAGT
TGCATAACGTCAACATGTCCCCTCCATTTGAGTAAATTTTGCTGATAATT
GTATACAGATGCAAATTGAAATTAGCTGGATAGCCTCAACATGGGTACGA
CGGAATTATATAAGAGGTTCAGAGTTATATAGTTTTCAGCTTTCATGGCA
TCGGTCGTTCATGTGAAGGCTATTTCGTGTTGTATCTATAGTACACATGG
GAGTGATACTCCATTGTGAAGGTTGCTGTAGTTCATGTCGTGCGTGATCG
AAGAGGCGCGAGAAATTTCCAGTCCGTGGTCACGATGGGGTCAGACTTTC
GATCCTATGAACAGGATCCTGCCGATTTATCAAGCAGCATATCCAAACAT
TCTTCAAGCCAATTCAGAAATTCGTTTCACCTGGTGAGCATGCGTGAGTG
GGACTGGATGAGTTGTGGCCTGGTAGTAGGGGAGTAAGCACTTGTTCATG
CGCAACTAGTTCAGCGTCATGTACTCCAATCGCTCACAATAGGGGTAGCT
TGTCCCCAGGCGATCGCTTAGCACTCCGAAGTCTGAGTACAATTTGCTTA
TAGTGAGTGTGCATTGAACTCATGTTTTTACTCTCTATTTGGTGCCGAAC
ATTCGTTTTCCTCTGTTGCAGAAATTGGTCCGTAAAGGCATCTTTTTGAG
TGTATCTGTTATTGACAAAGATTCGTGAAATGTAAAACGAGTAGTATTCG
ACATGTGAGATTGACCTTGGGCATATGGCATGCTCCCCCAGGTTAAATGC
GGGTACTAACTTCATGGTGTCGACTCAATATGAGTGTGAATGCGGGTGTG
ATATCTCTTGTCCGCGTAATATGAGTGCGAACATGGCAACTATGAATTGA
GGATAATGTGGCATTATGTGTGGTGGCTCAAGCGTGGGTCGTTCATGTTG
ATTTTTCAATGTTGATTTTTCAATGTTGATTTTTCAATGTTGAAGCCGCT
AGAAATTGTCGATTATTTTTTTTAATAAAATTATTTTATATCCCCCCCTC
CCCGCCTCCCCCCTTTTTTCTGGTTTAAAGCGAAATATTAACGATCAAGC
CAACAAATGCATGAACCAATAAGCACACATGTATACATGTTCATAAACAC
ATATATTCGTCACATGCCAACAGCTAGATGACCGTTCATTGAGACCAACA
AGTTCTTACTGCATTAGTTCGAAGAATTCCCTACACTCTGGAATCTATCC
ACATTAGACTGTTCACGTATGTCTAGGACTGTCTACCTCTAATGTGACTC
GACTAATCCATCTCCCGGAATTGTTTATAATCCATTCCATGGCTCACTCA
GTATCATACGAAAAGTCCCGAACTACTTTCTGTATCTCACTAATGCCAAT
ATGTACATTTCCGTAACTCTTTTCCGGCCTGTTTCAATAGTAATAGATTG
TGAATGAGACTGTGAGGATAAAGTGTTTTTTTAATCTGTTCAATCATTTG
TTGGTTTCCGTGTATATATATATATATATACCCATTTAAATAGCTTTGCT
CCAAACAATCGTGACGTCGCCGTTACAAATACTGTTTTACTGGTTGTTTT
ACGTGCAAACCGACACAATTGTGACGCACAAGCCCCGTATTTACATATCT
TTGACTCTTTGATTTGATATGTGGGAACCTTTAATAGTTTTTAAGCTGGT
CCTTTCCATCTCTTTTATCGTGTATGGTGACATCTGTTCTACCTTCCATC
CGTGTCTTAATCCGCATGTCTAAGGAAGTTACCTCGGGTCCTCCCCTCTC
CAATTATACAATAATAGGATTGTCAACCATGACCCCTATGCTCGTCTCCT
CCCCCCTCCCCCCCCTCGCGGAGAATGACAAATACATGTACTTGGAGTAT
TCGCGACGGAAAAACCCCCGAAACAAAGTGTTGGCCTGAAGGTTCCACAC
GTCCGACGGATCAATATCCGCACGATCCGTGGGGTACGGATCACTGCTGT
ATCGGCAAAAAATTCGGGGATAAAACACGGAACACCTATCGTTGGTGCAG
ATCATGTTCGAACGAACCGTAAGGGTACAGATCATTGGTGCGAAACATGT
GCAGATCGAACACGGTGTACGGATGGCTTGTGCAAAAACATGCACTAACG
ATCCGTCTCGTAGAGATCATCGTGGACAAACATGTACTAACGATCCGTAG
AGCACGGATCAATGGTGCTAACACGTAATAACATTCCGTAGCGTACGATT
CCGTCCTGTGAGAACGAAGGTGCTGCCTGACGGTAACCCAGTGTATAAAA
TAGCAACCACAAGTACGCTGAACAGTGATAAATTTTCCCGAACCGTAACA
CATTTTTGCCTAACAGTAACAGAAAGTTGAAGAGGATTTTTTTTCTCCGA
AACGTCACTTACTGCGCTGACGATCCGTACACGAGGACGATCCGTCGAGT
ACGGATCGGTTGTACGAATCATGGGCAAACGATTCATAGGGTACCCATCA
GTTGCATGGATAACGAGTAAACGATCTGTTGGGTACGGATCAGGACGGCT
CCGAATAATAGTACAGTATTATCATCATGAAACGAATAAAGAGGAGGGTT
GACACTCTGTTATATGTACCCACAAAATTCAAAACTTTCAGGCGATTGCT
TTTTAACTTTCATGGTGAAATCTCCAAAGTATTCGTGTTCGTCCGGGGGG
TGGAACTATTGAATGAGTGAAATGCACCCCGGACTCGTGGCACACGGACA
ACTATCCCTGAGGGAACTTTTCAGTTGTAAGAGTATGAGGGCTGTGAGTC
ATAGTACAGGTAGTGCCTACACAAACAATTAATCATGTCCTCTCCAGTTG
TACAGACAGCCCTTGTTGCTTCAACTTTTCCAAATAATTCTCGAGACTTG
TACCAGTAGCATTTTGCGATCTCCTGTTCGTGTTCCAATAGCATATAGTT
CCGCGAGTTGGCTGCGTTACACGTATGATCGGTAGCACGAGAGTGCGCCG
TCCACGCACACATACCAGTAAATTCGCACAAACAAGACCAAATCGCAGGA
CTGCTGGTGCAGGTACTTTGTAAAGGATAGCCAGGTATTACAGTATAACC
GATGTGAAAACGCGACCGCTGGATGACACGGACCTCGGACCTCGGCCCCC
AACCACGATCCTTTTGTTTCATTCTCCCTCGGTTTTACTCCCAACGAACA
AATAAACAGGCCTACTGGACGATGAAAGAACGAATCGTGGAGTTCGAGCA
GGTGCTGCTACGCACCATCAACTTTCAGGTAGATCCCCCCGATCCTTACC
GCCTGCTGCTGAACTACGCGCGCTCGCTGAGGCTCGGCCGCGCCGCGACT
CGAACAGCCTGGGGGCTGGTAAACGATGTCTTATTTTGTCCGAGGGCGCT
ATCGGCGCCACCGCCGGCGGTCGCCTGTGCTGCCATCCGCATGGCCACCC
GAATACACGGAAGCGAGCGACGACTCAGGTGGTTTTCCCCGCCGCGTCGC
AAGTCTGGTGGTGGTAACAAACGACGAAGAGGGCCGACAGGACACGGTGA
CATTGTTGACATGAGCGGCGTTTCGGGTTCGGGAAACGATAGGTCTGGCG
GGGAGGATGTACGGCAGGGGCTTGTTGTTGTTGGCGGCGGCGACGATCCC
AACGGCAACGGCAGCACTCCCAGCGCGAATAATGGCAGCTCAACCGATGG
TGGTGGTGGTGGGGGGGGGGGAGCGGAAACTGAACCAGAAAAATCGGTGA
CGCCTGCGAGAGTGGAAACAGCCGGGGTTAAGACGAGGCTGCCGTCGGAG
CCGGAGCCGGAGCTGGAGGCAGTGAGGGATGGTGGCAGCGGTGCTAGCAA
TGCTAACGAGGCGGGTATCAGTACTACAGAATTAAACGTAGCTGATTCCA
TTGTCGTAGCGGCATCAGGCTCTCCTTCATGTGCGGTGACCGACCTGAGC
GATGCCGCGGCGGTGGGCGGGAGCGCGGGTGGAGTCCGTGGCAACTCTGA
CAACGGGCATATCGCCGCGGAGAATACAATGATGCCGTGGTGGGTGTTGT
TCGACGCTCGCGACGAGGAAGTCGAGCTGGTGTGCTCTGAGCTACTGGCG
CTTTACCGTGCCCAGGGGTGGGGT

Coding sequence (CDS) from alignment at H-paniculata_contig69:11728..17151-

>mRNA_H-paniculata_contig69.14823.1 ID=mRNA_H-paniculata_contig69.14823.1|Name=mRNA_H-paniculata_contig69.14823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig69:11728..17151- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACATCGACATCGGATCGCTGCGGTGCATGGCTCCCTCCCTGGGCAT
CCCGCCCCACCGGCACTACGACCCCAGCGATCTTCAGGATGCTGGTTTGA
GACTTGAGTGGGCCAAGTTTCTCTTCAGGGCGGGCTACCGCCTTCGCTAC
CCTCAGGCGAGTGACACGTTTCTCCCTCTACCGCAGTGCCGGATGAACAT
CGACATCGGATCGCTGCGGTGCATGGCTCCCTCCCTGGGCATCCCGCCCC
ACCGGCACTACGACCCCAGCGATCTTCAGGATGCTGGTTTGAGACTTGAG
TGGGCCAAGTTTCTCTTCAGGGCGGGCTACCGCCTTCGCTACCCTCAGGC
GAGTGACACGTTTCTCCCTCTACCGCAGTGCCGGACGACGGGAACTGCCA
TTCTTCTGTTTCATCGGTTCCTGATACAGGAACGAGTGGGTAAGCACCAG
AAAAGCCGAGACGTAATCCTGACGACCTGCCTGTTCCTAGCGGGTAAAGT
GACGGAGGCACCACGGCGACTGAGAGATGTGATCAACGTGCTGCACATGC
TGACGCGCACCACCCGGGACGAGCCTCCTCTTCTTGATAAGACGACGGGA
ACTGCCATTCTTCTGTTTCATCGGTTCCTGATACAGGAACGAGTGGGTAA
GCACCAGAAAAGCCGAGACGTAATCCTGACGACCTGCCTGTTCCTAGCGG
GTAAAGTGACGGAGGCACCACGGCGACTGAGAGATGTGATCAACGTGCTG
CACATGCTGACGCGCACCACCCGGGACGAGCCTCCTCTTCTTGATAAGGC
CTACTGGACGATGAAAGAACGAATCGTGGAGTTCGAGCAGGTGCTGCTAC
GCACCATCAACTTTCAGGTAGATCCCCCCGATCCTTACCGCCTGCTGCTG
AACTACGCGCGCTCGCTGAGGCTCGGCCGCGCCGCGACTCGAACAGCCTG
GGGGCTGGTAAACGATGTCTTATTTTGTCCGAGGGCGCTATCGGCGCCAC
CGCCGGCGGTCGCCTGTGCTGCCATCCGCATGGCCACCCGAATACACGGA
AGCGAGCGACGACTCAGGTGGTTTTCCCCGCCGCGTCGCAAGTCTGGTGG
TGGTAACAAACGACGAAGAGGGCCGACAGGACACGGTGACATTGTTGACA
TGAGCGGCGTTTCGGGTTCGGGAAACGATAGGTCTGGCGGGGAGGATGTA
CGGCAGGGGCTTGTTGTTGTTGGCGGCGGCGACGATCCCAACGGCAACGG
CAGCACTCCCAGCGCGAATAATGGCAGCTCAACCGATGGTGGTGGTGGTG
GGGGGGGGGGAGCGGAAACTGAACCAGAAAAATCGGTGACGCCTGCGAGA
GTGGAAACAGCCGGGGTTAAGACGAGGCTGCCGTCGGAGCCGGAGCCGGA
GCTGGAGGCAGTGAGGGATGGTGGCAGCGGCCTACTGGACGATGAAAGAA
CGAATCGTGGAGTTCGAGCAGGTGCTGCTACGCACCATCAACTTTCAGGT
AGATCCCCCCGATCCTTACCGCCTGCTGCTGAACTACGCGCGCTCGCTGA
GGCTCGGCCGCGCCGCGACTCGAACAGCCTGGGGGCTGGTAAACGATGTC
TTATTTTGTCCGAGGGCGCTATCGGCGCCACCGCCGGCGGTCGCCTGTGC
TGCCATCCGCATGGCCACCCGAATACACGGAAGCGAGCGACGACTCAGGT
GGTTTTCCCCGCCGCGTCGCAAGTCTGGTGGTGGTAACAAACGACGAAGA
GGGCCGACAGGACACGGTGACATTGTTGACATGAGCGGCGTTTCGGGTTC
GGGAAACGATAGGTCTGGCGGGGAGGATGTACGGCAGGGGCTTGTTGTTG
TTGGCGGCGGCGACGATCCCAACGGCAACGGCAGCACTCCCAGCGCGAAT
AATGGCAGCTCAACCGATGGTGGTGGTGGTGGGGGGGGGGGAGCGGAAAC
TGAACCAGAAAAATCGGTGACGCCTGCGAGAGTGGAAACAGCCGGGGTTA
AGACGAGGCTGCCGTCGGAGCCGGAGCCGGAGCTGGAGGCAGTGAGGGAT
GGTGGCAGCGCGGCATCAGGCTCTCCTTCATGTGCGGTGACCGACCTGAG
CGATGCCGCGGCGGTGGGCGGGAGCGCGGGTGGAGTCCGTGGCAACTCTG
ACAACGGGCATATCGCCGCGGAGAATACAATGATGCCGTGGTGGGTGTTG
TTCGACGCTCGCGACGAGGAAGTCGAGCTGGTGTGCTCTGAGCTACTGGC
GCTTTACCGTGCCCAGGGGTGGGGTCGGCATCAGGCTCTCCTTCATGTGC
GGTGACCGACCTGAGCGATGCCGCGGCGGTGGGCGGGAGCGCGGGTGGAG
TCCGTGGCAACTCTGACAACGGGCATATCGCCGCGGAGAATACAATGATG
CCGTGGTGGGTGTTGTTCGACGCTCGCGACGAGGAAGTCGAGCTGGTGTG
CTCTGAGCTACTGGCGCTTTACCGTGCCCAGGGGTGGGGT