mRNA_H-paniculata_contig6898.14822.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6898.14822.1
Unique NamemRNA_H-paniculata_contig6898.14822.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: D8LDY8_ECTSI (Phatr1_ua_kg.chr_17000030 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY8_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 3.270e-131
Identity = 200/228 (87.72%), Postives = 208/228 (91.23%), Query Frame = 1 
Query:    1 MTLIVGMATGLIAVFVTFCTKSLTTLKFRPVYALLHAAGGPTLKSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLWGQQVNHILF 684
            MTLIVG  TGLIAVFVTFCTK+L  +KF PVY  LH AGGP+ ++F  ML FNL YV VAN LV LEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYA+KS QNLWGQQ  + +F
Sbjct:    1 MTLIVGALTGLIAVFVTFCTKTLLNVKFTPVYTALHIAGGPSWRAFLVMLGFNLSYVTVANGLVWLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAIKSTQNLWGQQDLYYMF 228
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: A0A7R9U7Y3_9STRA (Chloride channel protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Y3_9STRA)

HSP 1 Score: 296 bits (757), Expect = 1.510e-91
Identity = 150/227 (66.08%), Postives = 183/227 (80.62%), Query Frame = 1 
Query:    4 TLIVGMATGLIAVFVTFCTKSLTTLKFRPVYALLHAAGGPTLKSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLWGQQVNHILF 684
            T  VG+ TGLIAV +T   +++   KF  +Y ++   G     +F T+L+FNL Y ++A     +EPLAAGSGIPEIK +LNGI LPRVVR KTL+CK +GV F+V++GLPAGKEGPMVHSG+VVAAGISQGKSN+LG DTSF++F+DFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEG S+WSTKLTWR FFCAMMTV TLY +++A+N +G+  N  +F
Sbjct:  136 TFFVGVLTGLIAVAITTTARAIQENKFNHIYDMVADDGEGFFAAFMTLLTFNLIYGLIAASSAVIEPLAAGSGIPEIKCYLNGIQLPRVVRAKTLVCKAIGVTFTVSSGLPAGKEGPMVHSGAVVAAGISQGKSNILGCDTSFARFKDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGTSYWSTKLTWRTFFCAMMTVLTLYVVRNAENSFGRSDNTSMF 362
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: A0A836CAG3_9STRA (Chloride channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG3_9STRA)

HSP 1 Score: 283 bits (725), Expect = 2.320e-88
Identity = 147/221 (66.52%), Postives = 178/221 (80.54%), Query Frame = 1 
Query:    4 TLIVGMATGLIAVFVTFCTKSLTTLKFRPVYALLHAAGGPTLKSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLWGQQ 666
            TL +G  TGL A+ VT  T +LT LKF  V  ++   GGP +++     +FN+ YV +AN +V +EPL AGSGIP+IK FLNGI+L  VV+ K L+CKV+G+MF+VA GLPAGKEGPMVHSG+V+AA ISQG  +    D+S S+FQ+FRNDREKRDFVA GAAAGVAAAFGAPIGGVLFSLEEGASFWST+LTWRAFFCAM+TVFTLY +KS++NLWGQQ
Sbjct:   50 TLGIGACTGLTAMLVTLSTGALTRLKFGAVRGVMEREGGPGVRALCAFCAFNVAYVAIANAMVVIEPLCAGSGIPDIKCFLNGINLLGVVKPKALVCKVVGIMFAVAGGLPAGKEGPMVHSGAVIAATISQG--DACCSDSSSSQFQEFRNDREKRDFVASGAAAGVAAAFGAPIGGVLFSLEEGASFWSTRLTWRAFFCAMVTVFTLYVVKSSENLWGQQ 268
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: A0A8J9SF97_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SF97_PHATR)

HSP 1 Score: 260 bits (665), Expect = 2.860e-85
Identity = 132/185 (71.35%), Postives = 152/185 (82.16%), Query Frame = 1 
Query:  109 AAGGPT--LKSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLW 657
            A+ G T  + +F    ++   +  +A+L V  EP++ GSGIPEIK FLNGIDLPRVVRVKTLLCKV+GV FSVAAGLP GKEGPMVHSG+VVAAGISQGK+   G DTSFSKF DFRNDREKRDFVACGAAAGV +AFGAPIGGVLFSLEEGAS+WSTKLTWRAFFCAM T+ TL+ +++   LW
Sbjct:   20 ASAGTTEWVAAFLAFAAYQTFFAAIASLFVWWEPVSGGSGIPEIKCFLNGIDLPRVVRVKTLLCKVVGVTFSVAAGLPVGKEGPMVHSGAVVAAGISQGKTRFWGVDTSFSKFSDFRNDREKRDFVACGAAAGVCSAFGAPIGGVLFSLEEGASYWSTKLTWRAFFCAMTTLATLFWVRNMDTLW 204
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: B8LCA7_THAPS (Chloride channel protein (Fragment) n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8LCA7_THAPS)

HSP 1 Score: 275 bits (702), Expect = 5.220e-85
Identity = 142/225 (63.11%), Postives = 173/225 (76.89%), Query Frame = 1 
Query:    1 MTLIVGMATGLIAVFVTFCTKSLTTLKFRPVYALL----HAAGGPTLKSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLWGQ 663
            +TL+VG+   +IA      ++ L ++K+  VYAL     +  G      F   L +   + + A+L V +EP+AAGSGIPE+K FLNGIDLPR+VR KTL+CKV+GV FSVAAGLP GKEGPMVHSGSVVAAGISQG++   G DTSFSKF DFRNDREKRDFVACGAAAGVA+AFGAPIGGVLFSLEEGAS+WSTKLTWRAFFCAM+T+ T + +++  + WGQ
Sbjct:    6 LTLVVGVLQAMIATTCNMASRRLGSMKYDHVYALGGMDDYVDGNGANSPFLAFLFYQTVFALAASLFVYIEPVAAGSGIPEVKCFLNGIDLPRIVRFKTLVCKVVGVTFSVAAGLPVGKEGPMVHSGSVVAAGISQGRTKFWGVDTSFSKFSDFRNDREKRDFVACGAAAGVASAFGAPIGGVLFSLEEGASYWSTKLTWRAFFCAMITLGTAFMIRNQDSKWGQ 230
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: A0A7S2WI06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WI06_9STRA)

HSP 1 Score: 273 bits (697), Expect = 1.060e-84
Identity = 135/228 (59.21%), Postives = 172/228 (75.44%), Query Frame = 1 
Query:    1 MTLIVGMATGLIAVFVTFCTKSLTTLKFRPVYALLHAAGGPTLKSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLWGQQVNHILF 684
            +T ++G   G++A+ + + + + T LKF  + A + + G  +  SF  +L+ N  + ++AN    +EP+A G+GI EIK FLNG  L R+VR+KTL+CK +GV F+V AGLP GKEGPMVH+G+++AAGISQGKS   GFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVL+SLEEG SFWSTKLTWR FFCAMMTV+TLY M++    W +     +F
Sbjct:   98 LTFLIGFCAGILALLIAYLSDAWTMLKFAALRAAIASHGAHSFLSFSVLLTINTVFTLLANACSRVEPVAVGAGIAEIKLFLNGRSLARIVRIKTLVCKAIGVTFAVGAGLPIGKEGPMVHNGAILAAGISQGKSTTWGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLYSLEEGTSFWSTKLTWRTFFCAMMTVYTLYLMRTLSTGWSRPDQKAMF 325
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: A0A7S4VX51_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VX51_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.030e-83
Identity = 131/178 (73.60%), Postives = 152/178 (85.39%), Query Frame = 1 
Query:  130 KSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLWGQ 663
             +F   L +   +  +A+  V LEP++ GSGIPEIK FLNGIDLPRVVRVKTL+CKV+GV FSVAAGLP GKEGPMVHSG+VVAAGISQG++   G DTSFSKF DFRNDREKRDFVACGAAAGV +AFGAPIGGVLFSLEEGAS+WSTKLTWRAFFCAM+T+ TL+A+++  +LWGQ
Sbjct:  209 SAFLAFLFYQTLFAGIASFFVYLEPVSGGSGIPEIKCFLNGIDLPRVVRVKTLICKVVGVTFSVAAGLPVGKEGPMVHSGAVVAAGISQGRTKFWGVDTSFSKFSDFRNDREKRDFVACGAAAGVTSAFGAPIGGVLFSLEEGASYWSTKLTWRAFFCAMITLGTLFAVRNFDSLWGQ 386
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: A0A7S4J0F6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J0F6_9STRA)

HSP 1 Score: 262 bits (670), Expect = 1.160e-83
Identity = 133/185 (71.89%), Postives = 151/185 (81.62%), Query Frame = 1 
Query:  130 KSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLWGQQVNHILF 684
             +F   L +   +   A + V LEP++ GSGIPEIK FLNGIDLPRVVRVKTL+CKV+GV FSVAAGLP GKEGPMVHSGSVVAAGISQG++   G DTSFSKF DFRNDREKRDFVA GAAAGVA+AFGAPIGGVLFSLEEGAS+WSTKLTWRAFFCAM+T+ TL+A++   + WGQ     LF
Sbjct:   51 SAFLAYLFYQTLFAAAAAMFVYLEPVSGGSGIPEIKCFLNGIDLPRVVRVKTLICKVVGVTFSVAAGLPVGKEGPMVHSGSVVAAGISQGRTKFWGVDTSFSKFSDFRNDREKRDFVASGAAAGVASAFGAPIGGVLFSLEEGASYWSTKLTWRAFFCAMVTMGTLFAVRGFDSFWGQANMEKLF 235
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: A0A7S2S4G5_9STRA (Chloride channel protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4G5_9STRA)

HSP 1 Score: 273 bits (697), Expect = 3.720e-83
Identity = 135/228 (59.21%), Postives = 172/228 (75.44%), Query Frame = 1 
Query:    1 MTLIVGMATGLIAVFVTFCTKSLTTLKFRPVYALLHAAGGPTLKSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLWGQQVNHILF 684
            +T ++G   G++A+ + + + + T LKF  + A + + G  +  SF  +L+ N  + ++AN    +EP+A G+GI EIK FLNG  L R+VR+KTL+CK +GV F+V AGLP GKEGPMVH+G+++AAGISQGKS   GFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVL+SLEEG SFWSTKLTWR FFCAMMTV+TLY M++    W +     +F
Sbjct:   98 LTFLIGFCAGILALLIAYLSDAWTMLKFAALRAAIASHGAHSFLSFSVLLTINTVFTLLANACSRVEPVAVGAGIAEIKLFLNGRSLARIVRIKTLVCKAIGVTFAVGAGLPIGKEGPMVHNGAILAAGISQGKSTTWGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLYSLEEGTSFWSTKLTWRTFFCAMMTVYTLYLMRTLSTGWSRPDQKAMF 325
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BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Match: A0A7S0UJS8_9STRA (Chloride channel protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJS8_9STRA)

HSP 1 Score: 271 bits (692), Expect = 5.350e-83
Identity = 134/183 (73.22%), Postives = 154/183 (84.15%), Query Frame = 1 
Query:  115 GGPTLKSFFTMLSFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKVLGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDFRNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFFCAMMTVFTLYAMKSAQNLWGQ 663
            GG  LK+F++ +   +     A++ V +EP++ GSGIPEIK +LNGIDLPRVVRVKTLLCKV+GV FSVA GLP GKEGPMVHSG+VVAAGISQGK+   G DTSFSKF DFRNDREKRDFVACGAAAGVA+AFGAPIGGVLFSLEEGAS+WSTKLTWRAFFCAM T+ TL+A+K+    WGQ
Sbjct:   67 GGNMLKAFWSFVLIQVLMCFAASIFVYIEPVSGGSGIPEIKCYLNGIDLPRVVRVKTLLCKVIGVTFSVAGGLPVGKEGPMVHSGAVVAAGISQGKTRFWGVDTSFSKFSDFRNDREKRDFVACGAAAGVASAFGAPIGGVLFSLEEGASYWSTKLTWRAFFCAMTTMMTLFALKNMDTWWGQ 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6898.14822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDY8_ECTSI3.270e-13187.72Phatr1_ua_kg.chr_17000030 n=1 Tax=Ectocarpus silic... [more]
A0A7R9U7Y3_9STRA1.510e-9166.08Chloride channel protein n=1 Tax=Pinguiococcus pyr... [more]
A0A836CAG3_9STRA2.320e-8866.52Chloride channel protein n=1 Tax=Tribonema minus T... [more]
A0A8J9SF97_PHATR2.860e-8571.35Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
B8LCA7_THAPS5.220e-8563.11Chloride channel protein (Fragment) n=2 Tax=Thalas... [more]
A0A7S2WI06_9STRA1.060e-8459.21Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S4VX51_9STRA1.030e-8373.60Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4J0F6_9STRA1.160e-8371.89Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2S4G5_9STRA3.720e-8359.21Chloride channel protein n=1 Tax=Rhizochromulina m... [more]
A0A7S0UJS8_9STRA5.350e-8373.22Chloride channel protein n=1 Tax=Pseudo-nitzschia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6898contigH-paniculata_contig6898:115..5689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.4
Seed ortholog evalue3.7e-104
Seed eggNOG ortholog2880.D8LDY8
Preferred nameCLCN7
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
Hectar predicted targeting categorysignal peptide
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
EggNOG free text desc.Chloride Channel
EggNOG OGsCOG0038@1,KOG0474@2759
Ec32 ortholog descriptionChloride channel, core
Ec32 orthologEc-23_003270.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04040
Exons5
Model size684
Cds size684
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6898.14822.1prot_H-paniculata_contig6898.14822.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6898 115..5689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.156605-CDS-H-paniculata_contig6898:114..2691622930826.156605-CDS-H-paniculata_contig6898:114..269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 115..269 -
1691481469.7491307-CDS-H-paniculata_contig6898:114..2691691481469.7491307-CDS-H-paniculata_contig6898:114..269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 115..269 -
1622930826.1743102-CDS-H-paniculata_contig6898:658..7911622930826.1743102-CDS-H-paniculata_contig6898:658..791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 659..791 -
1691481469.761659-CDS-H-paniculata_contig6898:658..7911691481469.761659-CDS-H-paniculata_contig6898:658..791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 659..791 -
1622930826.2007346-CDS-H-paniculata_contig6898:2182..23081622930826.2007346-CDS-H-paniculata_contig6898:2182..2308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 2183..2308 -
1691481469.7703729-CDS-H-paniculata_contig6898:2182..23081691481469.7703729-CDS-H-paniculata_contig6898:2182..2308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 2183..2308 -
1622930826.2245598-CDS-H-paniculata_contig6898:4461..46451622930826.2245598-CDS-H-paniculata_contig6898:4461..4645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 4462..4645 -
1691481469.7793353-CDS-H-paniculata_contig6898:4461..46451691481469.7793353-CDS-H-paniculata_contig6898:4461..4645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 4462..4645 -
1622930826.2503269-CDS-H-paniculata_contig6898:5603..56891622930826.2503269-CDS-H-paniculata_contig6898:5603..5689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 5604..5689 -
1691481469.7885807-CDS-H-paniculata_contig6898:5603..56891691481469.7885807-CDS-H-paniculata_contig6898:5603..5689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6898 5604..5689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6898.14822.1

>prot_H-paniculata_contig6898.14822.1 ID=prot_H-paniculata_contig6898.14822.1|Name=mRNA_H-paniculata_contig6898.14822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MTLIVGMATGLIAVFVTFCTKSLTTLKFRPVYALLHAAGGPTLKSFFTML
SFNLCYVVVANLLVCLEPLAAGSGIPEIKSFLNGIDLPRVVRVKTLLCKV
LGVMFSVAAGLPAGKEGPMVHSGSVVAAGISQGKSNVLGFDTSFSKFQDF
RNDREKRDFVACGAAAGVAAAFGAPIGGVLFSLEEGASFWSTKLTWRAFF
CAMMTVFTLYAMKSAQNLWGQQVNHILF
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mRNA from alignment at H-paniculata_contig6898:115..5689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6898.14822.1 ID=mRNA_H-paniculata_contig6898.14822.1|Name=mRNA_H-paniculata_contig6898.14822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5575bp|location=Sequence derived from alignment at H-paniculata_contig6898:115..5689- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCTTATCGTGGGAATGGCAACGGGACTTATCGCTGTATTCGTGAC
CTTCTGCACCAAGTCACTCACCACTTTGAAGTTCAGGTTAGAAGGAGCGG
AATAGATTATGACAAATTGGTGTAGTCGTTGATGTCTTGTACCACCTAAT
ATGAGAGGGTCAAGGTCATGCACACGTGATCAAGGATACACATTTGTGGG
TAAGCTGGCTTCACATTTTTTTACTGCTCTGTTGACGCGGTGTGCTGTCC
CGTGTTGTAAACAGTGCTTTCTGGTACTGGAGACAACGACCTGTCATGTT
GAGCACAACTACATGACCCTCTCCTGTTATCTGAAGGTCGGGTGATGCGT
GTACCGTGAGTACTCTAAAAACGCCCCGGGGCGAAGCAAGCACTCGTTCA
AACCTGATTATCTCGCAAATTATCCGGAGGTGCCACTTGGTGGCACCGAA
AGTTTGTGTCGTTGAAAAGATGTAACTTGTAGCTATCTGTTATTTGATAG
ACGTGCTTTTTCCCAAGGCACCTGGGGCTTTGCTGTCGATAAGCTCGAGT
TTGAAAATGTTCGCTCCCCCTTATTAATCATGATTTAATGTTTTGCTGAT
TTGTGTATACAAGTGCAGATAATCGTCAGCTGCATAACCTCGACGTGGGT
ACGACCGAGTTATTCTATGATCATGGGTCATAAATCTACCAACTGTGGTG
ATTGTTTATACACACATACATACACGTAGACATACACCCCACGGACCTAC
GCCCGAACGGGTAGGGTAGATCTTGAACTGAGCATGACTGGAAGTCTAGT
CAAAGGTCTTTTAGTGGGTGTAACCCCCACACTGCCTACTTGTTTCGGCC
GAACCGGGGTGGCGCCTACCCCGCAGAGGAATAAATAACTCTGTTCTGTT
GAAGGACATACTTTAGTAAAATACTCATGGAAGCATCGGTAAAGGTTTTT
GCCTTAGCCTTTCGGGGGTTAAAACATACACACACACACACACACACACA
CACACATACACACATACACCTCCCTTTTTTGCCTCTTTTTGCAGGCCCGT
GTATGCCCTTCTTCACGCGGCTGGAGGCCCAACCTTAAAGAGCTTCTTTA
CCATGCTTAGCTTTAACCTCTGCTACGTGGTTGTGGCTAACTTGCTGGTG
TGCCTCGAGCCCTTGGCCGCGGGGTCAGGCATTCCCGAGATCAAGAGCTT
CCTTAACGGGATAGACCTGCCCAGAGTGGTGAGTGGATCTCCAATACTAC
AATATTTGATTATACTGATGTCTGTTCGTTCTGTGGTTGAGCAGCTTCTT
GCATGTATTATATATATATATATATATATATATATGTTATTAAATGAAAA
TACTCTCAAGCCATGAGGAAACGGTTTTTTGCTCACTCGATGCTTGAGGC
GTTGAGTGAAGTAGTGGATTAGAGCATTGGTTGAAAAAAACGGTGGCCTC
CCTGGGGGGGGGAGGTACCGCGATGATGTAACCGTAATGTGATATTTGAG
TGCTGAGGAGGTGAATGTTCCGGAGTTTGATGAGTCTATTGCCGATGGTA
TATCAAGGATTCGTAAGAAAGCACGAAGAACATGCCTTCGACCATGAGTA
TATCACAAGTTTTAACGATATATTGACTAATGGTGTTCCCTGTGCATAGG
CTTTAGTTTTGTCCGCCCCTCCATGTATTCTACTTGCGTTAGCTGCTACA
ATAATGTGTGATAAACACACTCTTGTTGCTCTGCGATTTAACTATCTATA
TAAATGTCTACGAAGGGAAAACTTGCCAAATATGAATTTCACACTCGACG
GGAAGATTCACCCAGAATCAAGGCAGATAGGAGAACTCGTCGTTGACGAG
ATGGAGACATCATTTGTTGACCTCACGCAGTGGTCTAGTTGGTCCCCCCA
CCCTACATGCTACCAGAAATGCACATGATAAGTGTGGTGGAGGTACGCTG
AGGATACTACGGGTGGTCTTTGTGCAAGTTGATTGGTGAACTCGACTTTG
CTGGGTGATGCGGGTGTAGATTGGCATGTCGTATCTCACGGTCACGGGTC
CTTGTAATCGCTGTAGTTCTCCCGGATTTCAAGGGTGCTCTTCGTCGTTT
TAAAATGAATCACGGGAACCCAGAGGATTCCGGTCGTCTATGTCAAAACG
ATGAAGAGTAGCAGCCTCAACATCCTCGCGGACGGGGAAATTTTTCTGGC
CCTCGATCATATGATGATTTATTGTGATTCACGCCGCGTTACCAATCAAG
GTTGTGCTTGTCACTTCGCTGGTATCTAAAAAGATTCAATATCCCGAGCG
TACCTTGTTCATCAAACCAACCATCTGCCTTTCTTCGTAGCATAGAGGTT
AGGAGGCGTGATTGGACCATTGCGCTAGTGTCAACAGGTCATACGCTTGC
TGTCCATCTCGTCGAGAACAGAGGCCTTCTCGCCCCACCAACCTTGACCT
CGACCTCGATATTGATACTTTGATGCATTTTGTCATAAGTCGTCCGTTTG
TAGGGGGACATGCGGGATGGTTTTTAAGCACGATTGAGGAAGTCGACGAA
AGTCAGGTGTTTCCACAGAGGGCTAGACAATTGTACAGTCTGAAAGATAA
ATCCGTGCAATTGGAACAGCGTCTGGTTGATGTAATTATTGATGGATACA
GTAGTGATGATGATGATGATGATGGCGATGATAATGATATGATGATAACA
AAAATGATGATATAATAATAATAAAAAACACAATGACGTTCCTTCGGAGC
AGTGTCCATTCTCTGTCTTGAGTGTTTGGTTTTTAATTGTCACTTTACGA
CACTGAATAGTTCAAGACGCACGTCTGTTGCAACCCATACGATATGGAAA
AGAAACAACCGCCTCCTATAGTAGCGGCGGTAGGGGACGTGATCTTGGTC
ATCATCCACAGGGTAGCCCGCAAAACTGGAAGGCGGGCGGGCCGTCCCCC
ATGTGTAGTCTCGAGTGACGGGGGGGGCTATACAAGCCCTCGGCATGATG
TGTAATATCGCGTCACCCTTACTCAATGTAATCTTGCCGGTATGTCGTGT
AGATTTGAATGGAGTAAGCTGCGTAATAATCTCAACCTGGATACGATGGA
ATTTTATTATGACCCATTGTAGATTGATGTATTATAACTGTGGGAAGTGG
GTTGAGTAGTGAACGAGGCCGGCGGTGGGTGAACGGGTTTTTTATTTGTA
TTCCTTGTCAGGCGTTCATGTATAGATTCCCATCATGTTAACGAATACAG
GAGTGCACACACGAGCGAGACAGTGATTCATGATGCTCCCTTTCTCGTGA
AAATGTAGTGTTGCCTCGCTCCCCCCCGACGCTGCTCCTTGGCGATTGTG
TCCTCTTTGCGTTGCAACCTGACAACGAAAGGTGCGCGTGAAGACACTGC
TGTGCAAGGTCCTCGGGGTCATGTTTTCCGTGGCCGCCGGCTTGCCGGCC
GGCAAAGAAGGGCCTATGGTGCACTCCGGGTCTGTCGTCGCCGCGGGTAT
TTCTCAGGTCAGTAAATCGTAATCTTGTGGAGATTCATAGCAGTTATGTC
CCCTTCCCTCAACGATATACTGATTTGGAATGGATTTTTAGTCATGGAGG
AGAAATCGCTAAGAAAATTAAGTTTTGTAAAAGACGTCTGGCCATGGATC
TGGAGCCCTCAATGGAAATGACCAAGTTGCGGGTGTAGTTGGTTAGCTAG
CGAGCTAGCTACCTAAGGGCATCAAGTTTGCTTTTTTATGTTATTTGGAG
ATATCCTTTTTTTTTTTTTTTCCGTCTTTCGGGTTACTAGGGTATCGCGG
CCATCAAGGTTTCTTTCTAATCGTGTTGGTAGACCGTCATTTTTTTTTGT
TTTTTCAATGTCTGGTCAAGTATCCAGTCATTCGCTGCTATTTGCATCTG
TTTTGATTGAGAGTTATGTGCGCAGCATTGACCCTCTAGCGCACGTCTCA
TTGCATATCTTTGTTGCAGGAGCTATGGTACAGGTCAACATATATTGATA
TATAGATGAATAGATTTCGTCCTCCGGATAAATACGAATTCTTGGGAGGA
TTTAAAGGGAAATTCAGGATGAGCACGATTGCTTTACGTGCCCCCAGATG
ATTCGTCGCTGCTCCGAATAACAAGTGTTGCGAATGAACGGAGGTCAATA
ATTTGTTCTTTATGCTCATGCATGTTGTTGAAACCTACCGCTGCTCCGAA
TATTAACAGTGAAGCAAACAAACAGGGGGCGTTAAAACGTGATTTTCATG
TGCCCCCCCGCATTCTGGAAGTCGGGGGAATACTGTTAAATTTTGGTTGT
GGTTGTACGCTGCAGGTACTTGTTGTTTATCCGGGAGGTGCTGTCCTTGG
TACAGAGCAAGTCTACTGCGCTCGGTGTTCAAAATTCCTGTTTAAAATTC
CACATCACCCCTCGCATGAAGGTCGATGAAGGGTTTGTTGAAGGTTGTTT
TGCATGGCCTTGAGAAAATCGACGATAGATCGATAGATGGCGTGAAAGTC
TTCTTCATTTCACCTTGGCGAAGTGTATTATTTAGAGGATAAGCGCACCA
CTTTCGCAGATTTTTCCACGGGTTTGAGCGTAGTAGAGGTTGTGATCGGT
TACAGGTTGAGATTGCTTATATGATGACGGCGTTTTTGCTTGGAATTAAA
AAACAATAAATCATCCCAGCTGCGGAAAAAAATTACGAATTCTACTCTTT
TTTTTTTTTTTTTTTTTTTTTTGCAATGCACTTTATTTCCATTCTAATAT
TTTCCTTGATTTGGGTTTTCAGGCCAAATCTAATATGCTTGGTTTTCAAC
CTCTTAAAATAAAATAAAAAACATTTTTTTTTAATGCTCTGTATATCTTC
CTTCTGTTTGTTTCCCGTTTTTTTTTGTTTTTTTTTTATCTTTTGCAGGG
TAAATCAAATGTGCTCGGTTTCGACACGTCCTTTTCCAAGTTCCAAGACT
TTAGGAACGATCGCGAGAAGCGAGATTTTGTGGCGTGCGGGGCAGCGGCC
GGAGTAGCCGCTGCGTTCGGAGCTCCAATCGGTGAGTGAGAAAAGAAAGG
GAGTGTGGTGGGAGTTGGAGCAGGAGGAAGCGAGAGCTGTCGATTAGTCT
TGTTTTAAAAAGTATTGTAAAACGTATCCCAATGGAAAAATTAGAAATAC
TGAGAAATTCGAAAAATATTTATTTTTGTAAAAATTGGCAGAATATATCT
TGGAAGATTTGAAGAAATGCATTACAGCATCGCAATCTTGAAAAAGATAT
GATGAAAATTCAGAAGAAAAGAAACGAGTTTTTAAAAAACAGAACGTCCT
GGAAACGGAAGCAGACAACATTTTCCATGTGTTTGAAGATGTGTCTCAAA
CGGAAGAGAAAATTGTCTCCACACGGGAACTTGGACGTCATAATTATGTT
AAAAATGTTATTAATAATAGGTGGCGTACTGTTCAGCCTGGAGGAGGGTG
CTTCGTTCTGGTCGACGAAGCTCACGTGGAGGGCATTCTTCTGTGCCATG
ATGACAGTGTTTACACTTTACGCGATGAAGAGCGCGCAGAACCTTTGGGG
ACAACAGGTAAACCATATTTTGTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig6898:115..5689-

>mRNA_H-paniculata_contig6898.14822.1 ID=mRNA_H-paniculata_contig6898.14822.1|Name=mRNA_H-paniculata_contig6898.14822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig6898:115..5689- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCTTATCGTGGGAATGGCAACGGGACTTATCGCTGTATTCGTGAC
CTTCTGCACCAAGTCACTCACCACTTTGAAGTTCAGATGACGCTTATCGT
GGGAATGGCAACGGGACTTATCGCTGTATTCGTGACCTTCTGCACCAAGT
CACTCACCACTTTGAAGTTCAGGCCCGTGTATGCCCTTCTTCACGCGGCT
GGAGGCCCAACCTTAAAGAGCTTCTTTACCATGCTTAGCTTTAACCTCTG
CTACGTGGTTGTGGCTAACTTGCTGGTGTGCCTCGAGCCCTTGGCCGCGG
GGTCAGGCATTCCCGAGATCAAGAGCTTCCTTAACGGGATAGACCTGCCC
AGAGTGGCCCGTGTATGCCCTTCTTCACGCGGCTGGAGGCCCAACCTTAA
AGAGCTTCTTTACCATGCTTAGCTTTAACCTCTGCTACGTGGTTGTGGCT
AACTTGCTGGTGTGCCTCGAGCCCTTGGCCGCGGGGTCAGGCATTCCCGA
GATCAAGAGCTTCCTTAACGGGATAGACCTGCCCAGAGTGGTGCGCGTGA
AGACACTGCTGTGCAAGGTCCTCGGGGTCATGTTTTCCGTGGCCGCCGGC
TTGCCGGCCGGCAAAGAAGGGCCTATGGTGCACTCCGGGTCTGTCGTCGC
CGCGGGTATTTCTCAGGTGCGCGTGAAGACACTGCTGTGCAAGGTCCTCG
GGGTCATGTTTTCCGTGGCCGCCGGCTTGCCGGCCGGCAAAGAAGGGCCT
ATGGTGCACTCCGGGTCTGTCGTCGCCGCGGGTATTTCTCAGGGTAAATC
AAATGTGCTCGGTTTCGACACGTCCTTTTCCAAGTTCCAAGACTTTAGGA
ACGATCGCGAGAAGCGAGATTTTGTGGCGTGCGGGGCAGCGGCCGGAGTA
GCCGCTGCGTTCGGAGCTCCAATCGGGTAAATCAAATGTGCTCGGTTTCG
ACACGTCCTTTTCCAAGTTCCAAGACTTTAGGAACGATCGCGAGAAGCGA
GATTTTGTGGCGTGCGGGGCAGCGGCCGGAGTAGCCGCTGCGTTCGGAGC
TCCAATCGGTGGCGTACTGTTCAGCCTGGAGGAGGGTGCTTCGTTCTGGT
CGACGAAGCTCACGTGGAGGGCATTCTTCTGTGCCATGATGACAGTGTTT
ACACTTTACGCGATGAAGAGCGCGCAGAACCTTTGGGGACAACAGGTAAA
CCATATTTTGTTTGTGGCGTACTGTTCAGCCTGGAGGAGGGTGCTTCGTT
CTGGTCGACGAAGCTCACGTGGAGGGCATTCTTCTGTGCCATGATGACAG
TGTTTACACTTTACGCGATGAAGAGCGCGCAGAACCTTTGGGGACAACAG
GTAAACCATATTTTGTTT
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