mRNA_H-paniculata_contig6897.14821.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6897.14821.1
Unique NamemRNA_H-paniculata_contig6897.14821.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6897.14821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6897contigH-paniculata_contig6897:4490..4861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6897.14821.1prot_H-paniculata_contig6897.14821.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6897 4520..4849 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.1013935-UTR-H-paniculata_contig6897:4489..45191622930826.1013935-UTR-H-paniculata_contig6897:4489..4519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6897 4490..4519 +
1691481469.721881-UTR-H-paniculata_contig6897:4489..45191691481469.721881-UTR-H-paniculata_contig6897:4489..4519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6897 4490..4519 +
1622930826.1232524-UTR-H-paniculata_contig6897:4849..48611622930826.1232524-UTR-H-paniculata_contig6897:4849..4861Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6897 4850..4861 +
1691481469.7385583-UTR-H-paniculata_contig6897:4849..48611691481469.7385583-UTR-H-paniculata_contig6897:4849..4861Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6897 4850..4861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.1134703-CDS-H-paniculata_contig6897:4519..48491622930826.1134703-CDS-H-paniculata_contig6897:4519..4849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6897 4520..4849 +
1691481469.730573-CDS-H-paniculata_contig6897:4519..48491691481469.730573-CDS-H-paniculata_contig6897:4519..4849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6897 4520..4849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6897.14821.1

>prot_H-paniculata_contig6897.14821.1 ID=prot_H-paniculata_contig6897.14821.1|Name=mRNA_H-paniculata_contig6897.14821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MIEYTSQAVGSSIKIPEYSSRLDSTAYDKKIIGRETRDLRLLLELAGLVD
RSRTESSRILHTPAVGAAGRENRLHRTDEGGMSPPWDPEEPWDRLQRSRT
WWGRNVISQ*
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mRNA from alignment at H-paniculata_contig6897:4490..4861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6897.14821.1 ID=mRNA_H-paniculata_contig6897.14821.1|Name=mRNA_H-paniculata_contig6897.14821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at H-paniculata_contig6897:4490..4861+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCATCGATAGGCTTCAGGAGCCTAGGAATGATCGAATACACTAGTCA
AGCTGTTGGTAGTTCCATAAAGATACCTGAATATAGTAGCAGACTGGACT
CTACGGCCTACGACAAAAAAATAATCGGAAGAGAAACAAGGGACCTTAGG
TTACTTCTCGAGTTAGCGGGGTTGGTAGACAGGAGCAGGACGGAGTCCAG
TAGGATTTTGCATACTCCTGCCGTAGGTGCAGCTGGGCGAGAAAACCGAC
TGCACAGGACGGATGAAGGGGGAATGTCACCACCCTGGGATCCGGAGGAG
CCCTGGGACAGGCTGCAGCGCAGTCGAACATGGTGGGGCAGGAACGTGAT
CAGCCAGTAAGCAGTGATGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6897:4490..4861+

>mRNA_H-paniculata_contig6897.14821.1 ID=mRNA_H-paniculata_contig6897.14821.1|Name=mRNA_H-paniculata_contig6897.14821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig6897:4490..4861+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGAATACACTAGTCAAGCTGTTGGTAGTTCCATAAAGATACCTGA
ATATAGTAGCAGACTGGACTCTACGGCCTACGACAAAAAAATAATCGGAA
GAGAAACAAGGGACCTTAGGTTACTTCTCGAGTTAGCGGGGTTGGTAGAC
AGGAGCAGGACGGAGTCCAGTAGGATTTTGCATACTCCTGCCGTAGGTGC
AGCTGGGCGAGAAAACCGACTGCACAGGACGGATGAAGGGGGAATGTCAC
CACCCTGGGATCCGGAGGAGCCCTGGGACAGGCTGCAGCGCAGTCGAACA
TGGTGGGGCAGGAACGTGATCAGCCAGTAAATGATCGAATACACTAGTCA
AGCTGTTGGTAGTTCCATAAAGATACCTGAATATAGTAGCAGACTGGACT
CTACGGCCTACGACAAAAAAATAATCGGAAGAGAAACAAGGGACCTTAGG
TTACTTCTCGAGTTAGCGGGGTTGGTAGACAGGAGCAGGACGGAGTCCAG
TAGGATTTTGCATACTCCTGCCGTAGGTGCAGCTGGGCGAGAAAACCGAC
TGCACAGGACGGATGAAGGGGGAATGTCACCACCCTGGGATCCGGAGGAG
CCCTGGGACAGGCTGCAGCGCAGTCGAACATGGTGGGGCAGGAACGTGAT
CAGCCAGTAA
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