mRNA_H-paniculata_contig68964.14820.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig68964.14820.1
Unique Name	mRNA_H-paniculata_contig68964.14820.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 1.210e-64
Identity = 104/117 (88.89%), Postives = 112/117 (95.73%), Query Frame = 1

Query:    1 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            QKHEDD++ISGDGQAAF+ELNLNYNKVTDEVIRATMEEL+NTPMEP QNPDDYFNQKHLLRHK +KMGETISD YF D CVTGFT+EYKDVKMIMYRDPDFNVD+MQTTMRHMFLD+
Sbjct:   81 QKHEDDSKISGDGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDE 197

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BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: D7G2T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T3_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 2.980e-62
Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 1

Query:    1 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            QKH+DD +ISGDGQAAF  LNLNYNKVTDEVIRATMEEL+NTPME GQ PD YFNQKHLLRHK ++MG+TI DR F+DICVTGFTDE K+VKMIMYRDPDF VD+MQTTMR MFLD+
Sbjct:   64 QKHDDDTDISGDGQAAFEALNLNYNKVTDEVIRATMEELINTPMETGQTPDVYFNQKHLLRHKAEEMGKTILDRSFRDICVTGFTDEEKNVKMIMYRDPDFKVDKMQTTMRLMFLDE 180

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BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 7.180e-53
Identity = 85/115 (73.91%), Postives = 97/115 (84.35%), Query Frame = 1

Query:    7 HEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            HEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKDICV GF+DEYKDVK+I+ RDP FNV  MQ+TMR++FLD+
Sbjct:   38 HEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDPTFNVLDMQSTMRNIFLDE 152

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BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 7.950e-53
Identity = 85/117 (72.65%), Postives = 100/117 (85.47%), Query Frame = 1

Query:    1 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQK+LLR ++ KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV  MQ+TMR++FLD+
Sbjct:  103 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKYLLRTQLDKMGEAISDRRFKDICVRGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 219

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BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.830e-52
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 1

Query:    1 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            QKH+DD  I GDGQA+F EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV  MQ+T+R++FLD+
Sbjct:   60 QKHKDDTVIRGDGQASFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLVVFRDPTFNVLNMQSTVRNIFLDE 176

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BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.290e-51
Identity = 85/117 (72.65%), Postives = 100/117 (85.47%), Query Frame = 1

Query:    1 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPD+YFNQKHLLR ++ KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV  MQ+TMR++FLD+
Sbjct:  103 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 219

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BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 8.120e-51
Identity = 78/116 (67.24%), Postives = 100/116 (86.21%), Query Frame = 1

Query:    4 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLD+
Sbjct:  102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDE 217

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BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: A0A6H5LFM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFM4_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 2.410e-49
Identity = 77/116 (66.38%), Postives = 99/116 (85.34%), Query Frame = 1

Query:    4 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            KHED+  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++ KD+KMI++RDP F+V QMQ TMR++FLD+
Sbjct:  102 KHEDETGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDCKDIKMIVFRDPSFDVQQMQATMRNIFLDE 217

[Close]

BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: A0A6H5K7P0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P0_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.420e-49
Identity = 77/116 (66.38%), Postives = 99/116 (85.34%), Query Frame = 1

Query:    4 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F V QMQ T+R++FLD+
Sbjct:  102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFEVQQMQATVRNIFLDE 217

[Close]

BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 6.540e-49
Identity = 85/117 (72.65%), Postives = 99/117 (84.62%), Query Frame = 1

Query:    1 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDK 351
            QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV  M +TMR++FLD+
Sbjct:  121 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDE 237

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig68964.14820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KW66_9PHAE	1.210e-64	88.89	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
D7G2T3_ECTSI	2.980e-62	81.20	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JLQ5_9PHAE	7.180e-53	73.91	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5KVX0_9PHAE	7.950e-53	72.65	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L2I7_9PHAE	1.830e-52	70.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF66_9PHAE	1.290e-51	72.65	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5JXA1_9PHAE	8.120e-51	67.24	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5LFM4_9PHAE	2.410e-49	66.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7P0_9PHAE	4.420e-49	66.38	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5L580_9PHAE	6.540e-49	72.65	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig68964	contig	H-paniculata_contig68964:78..428 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-05_000750.1
Exons	1
Model size	351
Cds size	351
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930826.0608373-CDS-H-paniculata_contig68964:77..428	1622930826.0608373-CDS-H-paniculata_contig68964:77..428	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig68964 78..428 -
1691481469.7107184-CDS-H-paniculata_contig68964:77..428	1691481469.7107184-CDS-H-paniculata_contig68964:77..428	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig68964 78..428 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig68964.14820.1	prot_H-paniculata_contig68964.14820.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig68964 78..428 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig68964:78..428-
coding sequence from alignment at H-paniculata_contig68964:78..428-

protein sequence of mRNA_H-paniculata_contig68964.14820.1

>prot_H-paniculata_contig68964.14820.1 ID=prot_H-paniculata_contig68964.14820.1|Name=mRNA_H-paniculata_contig68964.14820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNP
DDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPD
FNVDQMQTTMRHMFLDK

mRNA from alignment at H-paniculata_contig68964:78..428-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig68964.14820.1 ID=mRNA_H-paniculata_contig68964.14820.1|Name=mRNA_H-paniculata_contig68964.14820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig68964:78..428- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAGCACGAGGATGATAACGAGATCAGCGGAGACGGACAGGCGGCCTT
CAGGGAACTGAACCTGAACTACAACAAGGTTACGGACGAAGTGATTCGAG
CCACCATGGAGGAGCTGGTCAATACGCCCATGGAACCAGGACAGAACCCG
GACGACTACTTCAATCAGAAGCACCTCCTTCGACACAAGGTCCAGAAGAT
GGGGGAGACCATCTCGGACCGCTACTTCAAGGATATATGCGTCACAGGAT
TCACCGACGAGTACAAGGACGTGAAGATGATCATGTACCGCGACCCAGAC
TTTAACGTCGACCAGATGCAGACCACCATGCGGCACATGTTTCTGGACAA
A

Coding sequence (CDS) from alignment at H-paniculata_contig68964:78..428-

>mRNA_H-paniculata_contig68964.14820.1 ID=mRNA_H-paniculata_contig68964.14820.1|Name=mRNA_H-paniculata_contig68964.14820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig68964:78..428- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAGCACGAGGATGATAACGAGATCAGCGGAGACGGACAGGCGGCCTT
CAGGGAACTGAACCTGAACTACAACAAGGTTACGGACGAAGTGATTCGAG
CCACCATGGAGGAGCTGGTCAATACGCCCATGGAACCAGGACAGAACCCG
GACGACTACTTCAATCAGAAGCACCTCCTTCGACACAAGGTCCAGAAGAT
GGGGGAGACCATCTCGGACCGCTACTTCAAGGATATATGCGTCACAGGAT
TCACCGACGAGTACAAGGACGTGAAGATGATCATGTACCGCGACCCAGAC
TTTAACGTCGACCAGATGCAGACCACCATGCGGCACATGTTTCTGGACAA
ACAGAAGCACGAGGATGATAACGAGATCAGCGGAGACGGACAGGCGGCCT
TCAGGGAACTGAACCTGAACTACAACAAGGTTACGGACGAAGTGATTCGA
GCCACCATGGAGGAGCTGGTCAATACGCCCATGGAACCAGGACAGAACCC
GGACGACTACTTCAATCAGAAGCACCTCCTTCGACACAAGGTCCAGAAGA
TGGGGGAGACCATCTCGGACCGCTACTTCAAGGATATATGCGTCACAGGA
TTCACCGACGAGTACAAGGACGTGAAGATGATCATGTACCGCGACCCAGA
CTTTAACGTCGACCAGATGCAGACCACCATGCGGCACATGTTTCTGGACA
AA