mRNA_H-paniculata_contig6880.14802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6880.14802.1
Unique NamemRNA_H-paniculata_contig6880.14802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6880.14802.1 vs. uniprot
Match: A0A7S2RZ48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ48_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.260e-5
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:   60 ARAFLHLSDELRDAFAQGQDDENLRYLKVEVVDGDTLINTGFRQKGTSLEADFDSLSQEVQDGTPALFLLALDADE 287
            ARA L +S+ELR++F   QDD ++R+L+   +D +T+     R    S++ADFD+LS  +Q+   +  L   D D+
Sbjct:    4 ARANLFVSEELRNSFVAAQDDRSVRWLRA-TIDRETIALLEQRAGSPSVDADFDALSDVLQENGASFVLFCEDEDQ 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6880.14802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2RZ48_9STRA2.260e-536.84Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6880contigH-paniculata_contig6880:3860..7322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_003560.1
Exons2
Model size338
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6880.14802.1prot_H-paniculata_contig6880.14802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6880 3860..7269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.783624-CDS-H-paniculata_contig6880:3859..39641622930823.783624-CDS-H-paniculata_contig6880:3859..3964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 3860..3964 -
1691481468.725939-CDS-H-paniculata_contig6880:3859..39641691481468.725939-CDS-H-paniculata_contig6880:3859..3964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 3860..3964 -
1622930823.8011663-CDS-H-paniculata_contig6880:7089..72691622930823.8011663-CDS-H-paniculata_contig6880:7089..7269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 7090..7269 -
1691481468.73473-CDS-H-paniculata_contig6880:7089..72691691481468.73473-CDS-H-paniculata_contig6880:7089..7269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 7090..7269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.8163981-UTR-H-paniculata_contig6880:7269..73221622930823.8163981-UTR-H-paniculata_contig6880:7269..7322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6880 7270..7322 -
1691481468.7454376-UTR-H-paniculata_contig6880:7269..73221691481468.7454376-UTR-H-paniculata_contig6880:7269..7322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6880 7270..7322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6880.14802.1

>prot_H-paniculata_contig6880.14802.1 ID=prot_H-paniculata_contig6880.14802.1|Name=mRNA_H-paniculata_contig6880.14802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MTARAFLHLSDELRDAFAQGQDDENLRYLKVEVVDGDTLINTGFRQKGTS
LEADFDSLSQEVQDGTPALFLLALDADELRLVTGRGVAAAVGGGG
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mRNA from alignment at H-paniculata_contig6880:3860..7322-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6880.14802.1 ID=mRNA_H-paniculata_contig6880.14802.1|Name=mRNA_H-paniculata_contig6880.14802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3463bp|location=Sequence derived from alignment at H-paniculata_contig6880:3860..7322- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCGAATAATACACCGATTGTGTGCACACACAGCGCAAACCACGTTGTA
TAGATGACTGCCCGTGCCTTCCTTCACCTCTCTGATGAACTGAGAGACGC
ATTTGCCCAGGGCCAGGATGATGAAAATCTGCGCTACTTGAAAGTGGAGG
TGGTCGATGGCGACACCTTGATCAACACAGGCTTTCGTCAAAAGGGAACA
TCCCTTGAAGCCGACTTCGATTCCCTTTCACAGGCAAGCAAGCACACATA
CCGTCTTTAGAGCTAGAGGGCGGCTATTACTACGCCGGTCAGCAGAAGAT
GAGTGTGTCATGTACGAAAGAGGGCTGCTGGGTTCCATGGAGTGGTAGCA
GACCCGAGAGTTGGTTCGTTGCTTCAGCACCGTTTGAGATTCGGATTAGA
AATTGAAGCTGAGAACACTTGTAATGAACTGCGGTGTGGTGCAGTCATGT
CATTGCCCGCAACACCACACCAACTCCCTATTTGTCCTTGCATATACTGT
CTGCACTAGACTGGCCGTCTGAATAGACGCGGTTCCTAATGATGGGGTGC
TCATCCTTTTTTTTTTAGAGCGTGGGTTGTGTTGAGACCAGCGCCTAAGC
GTTGATAAACAATCAGCGAAGTATCTGGCAGAGTATTTGCTCTGTTCGCC
GCAGAAGGGGTGGGTGTCCCTTGTCTGGTAGTATAGTACCTACTGCAGTC
TCGATGCTGCGTCTGGTTCTCACTGCGTTTATGATCCAGTAAAGCTTGTT
TCAGCACATGAGGAGCGAGAAATGTCATATCTATTGACAGTATCCAAGTC
TCCATTGTATGTATCTTCATTTGACATGCGTGGGCTCCCCAACGGTAGTG
CAAGAGTACAGTCCTACACTTGGTCCTCAACCCCGTCTGCGCGTACTTGC
GGAAAATGTACTTGGCGCCTAATCCCCAACAAAACACAAGAACGCCTTTG
GCACGAATACCAGGATAGGGAGCCGCCGCTGATCAGATAGCAAGATCATT
ATAGACAGTGCGTGAAGCATAGGCAGGGAAATGACATGGTTCTCCTGCGC
ACAACACCACTGCAGCGCTCGACATTCAGTGTGAGACTCTTTTTTTCCGA
ACTAGCCTCTGTTCCCAAAGCGTGAACGAAATGAATCAGATTATAGAACT
TGCGAGTTTAGCTTTTAGCCTTGACAGGTTGTCTTGTTTATACGCGGCTT
TCACGAGTTTCGGCATCCGCTTTTCGTGTATTCAAAGAAATAACATGAAC
ACTATCCAGTCGACGTCTCATAAAATAGAACTGCCCCTTAACCTTTCATG
TATAGTCTCTTGCGTGCGAGATGTTACTGTAGCTGATTTCCCCTGTTTGC
TCTAATTTTGCTGATTATAGTACGCAACCTCCCACCCAAGTGCATGCCAC
ATGGCGTACATGAATTTGAACCAGAAAATAAAGGGCTGGGGAATGTGTCG
ATAACGCACACACATCACTGTACAAGCTGGGCCAGCCAAGAAACTAATCT
GACGGTTTTGAGGCTGTGCCCCCATCAATTTAACGATTTTTGCAGGGAAA
CTTTGACATCGTGCTCTTCACTAACTTGTCAACACATTCAACGGCGTTCA
TTTCTTTTTGTCTTTTCTTATCGAAAATTATGGCCTATGCGAACATTCGA
GAAAATGCAGAGCCGACCGTAATTGCCTTGAAGAAAACAAAAAAAGTGAA
CTTCACTGAATCATTTTTCACAAACGTTCCGAATATGGAGTTGAAATTTT
AGATCAAAATTCTCAAAATTAAGCGGGGCATGGCAGATTGTTGTGGGACT
CCTGTGGGACGTACCGACCGGGCGTAATTTTTTCGCTGTTCTTCCCCCAC
AAGGAAGCAGGCTACCGCTTTTTAAGTACGTGCAAACGAGCGAATGGAGA
TTTAAGATGTACAGCATGGCACCTGCCGAATGACAAATAACATTAGATTT
CCAGTGCCACCACTACTGGTTGACCGTCCGAAGCGAACCACCACTCTGCT
CGTACGTCGTACTCATCCTGTGACAAAAAATCGAACACCACACCCGGTAG
GCCTGCCCATGCATTTCTATCCACTGTCCGCCCCTCCCTATCAATGGTGC
TCACGATATGAGTTGTGCGACTACCCGATACTGGTTATTATCCTACTTGA
TGTTGCGGTGAGCGTTGCACATCTTTATCTTCTCGATCATATCTTTTGGA
CTCGATGTCGCCACCCTTCTTAAGCTTCAAGTACGCCCGGCAGTAGTCTT
GCGTGCGGCGCGCGAAGCGGCGCACCCGCTGAACTGTCAGAATTTTTCCG
TGCACATCGAGGCGATTATGTTCCGGTGCAGGTGCAATGGCACCTCGTCG
TTCAGGAGCATCGACGCCATCCAATCCGCATGTGTCACATTAGCCCCTTC
CAGTGTTTCTTGAAGGCCCTCTCCGGGGTGCTGAAAAGCTTCGATTGCTT
CACCTGTGTCGTCTTCTTTGTTCTCTGCGTGTAGTTCAGTTTCAACCGCC
ACTTCCCCTTCTGCCGATCGAAATAAATCCTCGGGGCAGAGGTCTTCTGC
CAAAGCACCCTACCATGCGAACTTGGAGCCATGTCGCAGCTTGTGCGTTG
TACGGCTCCCAACAGCTGCAGTGCTGCAGCTCAAAATTGAAAATATTTTA
TCCCGCCACAAAAAATTGACAAACTGACGATTTTAGCTGCCAGTTTAATG
TACACACAAACCCATACATTGATGGATGGTAGAAGGACAGTACCGTCTTG
TCTGTAAATGCCCGCCATATGACACTGCCACCTGGCCTGCTCATAGACGA
TGATTTGCCGAATACAGGAGTACATCCCATATATTCAGATTCACCGTGGT
TTGAAAGTTACGACCGATTAAAGCTAAGTGAGTTTCTTGGCTTGCCCAGC
TTGTAGTTGCATGAATAGCAATGGGGCCGTCAGGTCGTTTATTATTCCCC
GTTCGTCACACTCTTGACTGCCATATTTTTCGTCAATAAATAAATACCGA
CGCGCCGGGTCGAGAAGAGAAGCTTCACATACGTGTTCTGTTATCCTAAA
GCATACTGACGGACCGAACAGGACCTGATGCACACACAGCAGAGACAGTG
CCGCAGCTGCATGCAATCGCGACCTGATTCCTCTGTGTGGTTGCGTGTCG
GCGCGTTACCCAATACATCAGTTTCACACTTGTATCTGCGTGTTACTTTC
TTCTTCTACAGATGTAAACCGTAGTGACTCCAACATCGTTTTTTCCAAAT
CATTGCTCCCCCCCCCGTGCTGAAATCGTTTGCATCCAAGCTGCAAAAAA
AAACTCATCCGCTGTGCATTGTACGCCATCCATCCCACGACAAACACGCA
TATCGTAGGAAGTGCAAGATGGAACGCCGGCTCTCTTCTTGCTCGCGCTA
GACGCTGACGAGCTGAGACTAGTTACCGGTAGGGGGGTCGCCGCGGCAGT
GGGCGGCGGTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig6880:3860..7322-

>mRNA_H-paniculata_contig6880.14802.1 ID=mRNA_H-paniculata_contig6880.14802.1|Name=mRNA_H-paniculata_contig6880.14802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig6880:3860..7322- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCCCGTGCCTTCCTTCACCTCTCTGATGAACTGAGAGACGCATT
TGCCCAGGGCCAGGATGATGAAAATCTGCGCTACTTGAAAGTGGAGGTGG
TCGATGGCGACACCTTGATCAACACAGGCTTTCGTCAAAAGGGAACATCC
CTTGAAGCCGACTTCGATTCCCTTTCACAGATGACTGCCCGTGCCTTCCT
TCACCTCTCTGATGAACTGAGAGACGCATTTGCCCAGGGCCAGGATGATG
AAAATCTGCGCTACTTGAAAGTGGAGGTGGTCGATGGCGACACCTTGATC
AACACAGGCTTTCGTCAAAAGGGAACATCCCTTGAAGCCGACTTCGATTC
CCTTTCACAGGAAGTGCAAGATGGAACGCCGGCTCTCTTCTTGCTCGCGC
TAGACGCTGACGAGCTGAGACTAGTTACCGGTAGGGGGGTCGCCGCGGCA
GTGGGCGGCGGTGGCGAAGTGCAAGATGGAACGCCGGCTCTCTTCTTGCT
CGCGCTAGACGCTGACGAGCTGAGACTAGTTACCGGTAGGGGGGTCGCCG
CGGCAGTGGGCGGCGGTGGC
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