mRNA_H-paniculata_contig68781.14796.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig68781.14796.1
Unique NamemRNA_H-paniculata_contig68781.14796.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: A0A0U5ACT6_9PHAE (Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Stschapovia flagellaris TaxID=243166 RepID=A0A0U5ACT6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.450e-15
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    4 FFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVPVK 114
            FF +VY+TLTKGSVEEANPW+KGRGLAFPALPRV  K
Sbjct:   50 FFFIVYLTLTKGSVEEANPWIKGRGLAFPALPRVSPK 86          
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: A0A0U4VFF5_9PHAE (Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Saccorhiza polyschides TaxID=45365 RepID=A0A0U4VFF5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.700e-14
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRV 105
            FFF VVY+TLT+GSVE++NPWVKGRGLAFPALPR+
Sbjct:    1 FFFFVVYLTLTRGSVEKSNPWVKGRGLAFPALPRL 35          
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 7.380e-13
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVPVK 114
            FFF VVY+TLTKGSVEEANPWVKGRGLAFPAL +V  K
Sbjct:  493 FFFFVVYVTLTKGSVEEANPWVKGRGLAFPALTQVSAK 530          
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: A0A0S2I710_SACJA (Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina japonica TaxID=88149 RepID=A0A0S2I710_SACJA)

HSP 1 Score: 68.2 bits (165), Expect = 2.570e-12
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPR 102
            FFF VVYITLT+GSVEE+NPWVKGRGLAFP LPR
Sbjct:  492 FFFFVVYITLTRGSVEESNPWVKGRGLAFPVLPR 525          
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: A0A8E8PDM6_9PHAE (Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDM6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.490e-10
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVPVK 114
            FFF VVYITLT+GSVEE+NPWVKGRGLAF  +P V +K
Sbjct:  485 FFFFVVYITLTQGSVEESNPWVKGRGLAFSPIPDVLLK 522          
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.820e-9
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRV 105
            FFF VVY+TLT+GSVE++NPWV GRGLAFP+L ++
Sbjct:  389 FFFFVVYLTLTQGSVEKSNPWVSGRGLAFPSLAKM 423          
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: A0A5K7TLP3_9PHAE (Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A5K7TLP3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.400e-9
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAF 87
            FFF VVY+TLT+GSVEE+NPWVKGRGLAF
Sbjct:  497 FFFYVVYVTLTRGSVEESNPWVKGRGLAF 525          
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.190e-8
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPR 102
            FFF VVYITLT+GSV ++N WV+GRGLAFP LPR
Sbjct:  492 FFFFVVYITLTQGSVVKSNYWVEGRGLAFPPLPR 525          
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: A0A0U1XAH8_SARHM (Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XAH8_SARHM)

HSP 1 Score: 55.5 bits (132), Expect = 7.760e-8
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPAL 96
            FFF +VY+TLT+G +EE+NPWVK RG+AFP +
Sbjct:  492 FFFYIVYLTLTEGHLEESNPWVKNRGIAFPTI 523          
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Match: A0A1L6KY02_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY02_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 5.580e-5
Identity = 17/28 (60.71%), Postives = 25/28 (89.29%), Query Frame = 1
Query:   13 VVYITLTKGSVEEANPWVKGRGLAFPAL 96
            VVY+TLT+G +E++NPWV+ RG+AFP +
Sbjct:  496 VVYLTLTQGHLEDSNPWVENRGVAFPVI 523          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68781.14796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0U5ACT6_9PHAE8.450e-1583.78Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=St... [more]
A0A0U4VFF5_9PHAE2.700e-1482.86Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Sa... [more]
E6ZES6_ECTSI7.380e-1384.21Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A0S2I710_SACJA2.570e-1288.24Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina... [more]
A0A8E8PDM6_9PHAE1.490e-1076.32Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophycea... [more]
A0A0U4ZTN0_9PHAE1.820e-971.43Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=... [more]
A0A5K7TLP3_9PHAE3.400e-986.21Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyce... [more]
A0A8F0K0Q8_9PHAE1.190e-876.47Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
A0A0U1XAH8_SARHM7.760e-865.63Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyc... [more]
A0A1L6KY02_9PHAE5.580e-560.71Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum f... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig68781contigH-paniculata_contig68781:254..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.1122425-CDS-H-paniculata_contig68781:253..3701622930823.1122425-CDS-H-paniculata_contig68781:253..370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68781 254..370 -
1691481468.49839-CDS-H-paniculata_contig68781:253..3701691481468.49839-CDS-H-paniculata_contig68781:253..370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68781 254..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig68781.14796.1prot_H-paniculata_contig68781.14796.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig68781 254..370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig68781.14796.1

>prot_H-paniculata_contig68781.14796.1 ID=prot_H-paniculata_contig68781.14796.1|Name=mRNA_H-paniculata_contig68781.14796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVPVK*
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mRNA from alignment at H-paniculata_contig68781:254..370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig68781.14796.1 ID=mRNA_H-paniculata_contig68781.14796.1|Name=mRNA_H-paniculata_contig68781.14796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig68781:254..370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTTTTTGTCGTTGTTTACATCACACTTACAAAAGGTAGTGTTGAGGA AGCCAATCCTTGGGTAAAAGGCAGAGGGTTAGCTTTTCCTGCGTTACCTC GTGTCCCTGTAAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig68781:254..370-

>mRNA_H-paniculata_contig68781.14796.1 ID=mRNA_H-paniculata_contig68781.14796.1|Name=mRNA_H-paniculata_contig68781.14796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig68781:254..370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTTTTTGTCGTTGTTTACATCACACTTACAAAAGGTAGTGTTGAGGA
AGCCAATCCTTGGGTAAAAGGCAGAGGGTTAGCTTTTCCTGCGTTACCTC
GTGTCCCTGTAAAATAATTCTTTTTTGTCGTTGTTTACATCACACTTACA
AAAGGTAGTGTTGAGGAAGCCAATCCTTGGGTAAAAGGCAGAGGGTTAGC
TTTTCCTGCGTTACCTCGTGTCCCTGTAAAATAA
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