mRNA_H-paniculata_contig687.14787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig687.14787.1 vs. uniprot
Match: A0A6H5L0D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D4_9PHAE) HSP 1 Score: 166 bits (419), Expect = 6.260e-40 Identity = 155/470 (32.98%), Postives = 213/470 (45.32%), Query Frame = 2
Query: 344 EAALNSNGAIKWNNFLAMASDIQLVPYLMDVGVLKASFHQVSAIPHVTQREVGSSSNNKLNTTRPMS--IRYPQFVEAISLLAFSTAGRLRLLYPDVAGQAPARHPSSTIEKSPGSPRERERMVNPERMVVHGQQSVTSG----------------RHAGGQGSQIAWVPGQT-VNALGGIAEMRRKKPTQAPNPSDPGTTDVGSRSNQSITSEASQPSYDLGALKAFFHHIRAAHEENRPRQHAGLNSTPAAGPRLQG-GWGNSDSLSVNEQPLPERQTTEGVGKTSAERPESNLDMSEGRSNESVECPSDTDE----------TEHSGPAQGGGKAGHRGEEMVRMRDSGQVFDQAMDWVSKLELKICRRNINERRDTRTG----SYLQPVDLPGGVGCDRDRSVST-GLGHGGNFARLVVIKEIQPIPDHAPRDVVRLLELALDHQQAGRFASALGILEKAAMLWEQ 1648
+ A++ I W FLA +SD+QLVP L+ + LKA+ Q G SS+ T+P + + YPQFVE +SL+A S AGRLR LYPDVAG P P++ G PR R N G S G R G+GS A P Q + +R KK + PG D Q E P YD+GALKA FHH AH+E R + R QG N S S++ + TT+G G + P SN ++ +S E E + D ++ G A G + ++ ++S +V ++ D VS LE K+ +E G ++L D V + + G GG FARLVVIKE+QP+P+HAP+D +LL+L LDH QAGR+A AL LEK A++WE+
Sbjct: 34 QTAISKARRIHWTGFLAASSDLQLVPRLIGLDALKAAVEQG-----------GPSSDRNAAATKPSAAGMSYPQFVEVLSLVAISAAGRLRRLYPDVAGPEP---PAAV-----GDPRHRNTPTN---FTSDGTASRGGGGGGPLALEMTSEEAGRRDEAGEGSDNARSPFQRKARHVRAAMRLRMKKGRSVVDA--PGIPDAPPVDEQP---EQVPPYYDVGALKALFHHAETAHKEQR-----------SGTVRPQGFHCHNVSSSSLSPPACRDTMTTKGEGASERSSPRSNSSCTDEKS-EPSEGGGNYDRGRGEGRAISAVDYEGTAAKGPDSNIFLQKAFSPQESARVLEELRDRVSDLEAKVLPHETSEVETGANGEGSETFLPRRDDARAVVVEEEPGPEPLAPGAGGGFARLVVIKELQPVPEHAPQDASQLLDLTLDHHQAGRYALALETLEKGALMWEE 464
BLAST of mRNA_H-paniculata_contig687.14787.1 vs. uniprot
Match: D7FM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM25_ECTSI) HSP 1 Score: 160 bits (406), Expect = 3.050e-38 Identity = 148/472 (31.36%), Postives = 208/472 (44.07%), Query Frame = 2
Query: 344 EAALNSNGAIKWNNFLAMASDIQLVPYLMDVGVLKASFHQVSAIPHVTQREVGSSSNNKLNTTRPMS-IRYPQFVEAISLLAFSTAGRLRLLYPDVAGQAPA------RHPSSTIEKSPGSPRERERMVNPERMVVHGQQSVTSGRHAGGQGSQIAWVPGQTVNALGGIAEMRRKKPTQAPNPSDPGTTDVGSRSNQSITSEASQPSYDLGALKAFFHHIRAAHEENRPRQHAGLNSTPAAGPRLQGGWGNSDSLSVNEQPLPERQTTEGVGKTSAERPESNLDMSEGRSNESVECPSDTDETEHSGPAQGGGKA-GHRGE------------------------EMVRMRDSGQVFDQAMDWVSKLELKICRRNINERRDTRTGS----YLQPVDLPGGVGCDRDRSVST-GLGHGGNFARLVVIKEIQPIPDHAPRDVVRLLELALDHQQAGRFASALGILEKAAMLWEQ 1648
+ A++ I W FLA +SD+QLVP L+ +G LKA+ Q SS N T R + + YPQFVE +SL+A AGRLR LYP+VAG P RH ++ + R P + + +++ G G++ + + + + +R KK PGT D Q E PSYD+GA KA FHH AHEE R +T G + N S S++ + TT+G G + P SN + E S P++GGG G RGE ++ ++S +V ++ D VS LE K+ +E G+ +L D V + + G GG FARLVVIKE+QP+P+HAP D LL+LALDH QAGR+A AL LEK ++WE+
Sbjct: 35 QTAISKARRIHWAGFLAASSDLQLVPRLIGLGALKAAVEQGGP----------SSDRNAAATKRSAAGMSYPQFVEVLSLMAIPAAGRLRRLYPNVAGPEPPAAVVGPRHRNTPTNSTSDGTTSRGGGGGPLALEITSEEAGRRDEAGEGSGNERSLFQRKARHVRAAM-RLRMKKGRSVV--VAPGTPDAPPVDEQP---EQVPPSYDVGAFKALFHHAETAHEEKRS------GATRPQGFHCR----NVSSSSLSPPACRDTVTTKGEGASERSSPRSNGSCID----------------EGSEPSEGGGNDDGGRGEGRAISAVDYEGTAAEVSDSKTFPQKVFSPQESARVLEEIRDRVSDLEGKVLPHETSEVETGADGTGSETFLPRRDDARAVVVEEEPGPEPLAPGAGGGFARLVVIKELQPVPEHAPEDASHLLDLALDHHQAGRYALALETLEKGVLMWEE 464 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig687.14787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig687.14787.1 >prot_H-paniculata_contig687.14787.1 ID=prot_H-paniculata_contig687.14787.1|Name=mRNA_H-paniculata_contig687.14787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=860bp MVNVQWYALGRIEAQTLAAWCSCRYMRPLRDRRYAFACWRSTIYAVWFTSback to top mRNA from alignment at H-paniculata_contig687:9456..15753+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig687.14787.1 ID=mRNA_H-paniculata_contig687.14787.1|Name=mRNA_H-paniculata_contig687.14787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6298bp|location=Sequence derived from alignment at H-paniculata_contig687:9456..15753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig687:9456..15753+ >mRNA_H-paniculata_contig687.14787.1 ID=mRNA_H-paniculata_contig687.14787.1|Name=mRNA_H-paniculata_contig687.14787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5160bp|location=Sequence derived from alignment at H-paniculata_contig687:9456..15753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |