mRNA_H-paniculata_contig68649.14783.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig68649.14783.1
Unique NamemRNA_H-paniculata_contig68649.14783.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68649.14783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig68649contigH-paniculata_contig68649:2..717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size716
Cds size426
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.4297547-UTR-H-paniculata_contig68649:1..2911622930821.4297547-UTR-H-paniculata_contig68649:1..291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68649 2..291 +
1691481467.8317142-UTR-H-paniculata_contig68649:1..2911691481467.8317142-UTR-H-paniculata_contig68649:1..291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68649 2..291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.4436386-CDS-H-paniculata_contig68649:291..7171622930821.4436386-CDS-H-paniculata_contig68649:291..717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68649 292..717 +
1691481467.8415694-CDS-H-paniculata_contig68649:291..7171691481467.8415694-CDS-H-paniculata_contig68649:291..717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68649 292..717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig68649.14783.1prot_H-paniculata_contig68649.14783.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig68649 292..717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig68649.14783.1

>prot_H-paniculata_contig68649.14783.1 ID=prot_H-paniculata_contig68649.14783.1|Name=mRNA_H-paniculata_contig68649.14783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MLKNHFSAPGFLVLGLSIKAVSHTLPPSIEKSILPFFRIFQVVHETCCSF
FRMKLNFVDAYPYFGEKLNANESDLSIIMTNIIFIINTTTIMKWGPKYEM
GTGCFFGMRVEMVYVILENKAFQGAVGEIEHMVKIMLSNNIL
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mRNA from alignment at H-paniculata_contig68649:2..717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig68649.14783.1 ID=mRNA_H-paniculata_contig68649.14783.1|Name=mRNA_H-paniculata_contig68649.14783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=716bp|location=Sequence derived from alignment at H-paniculata_contig68649:2..717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCACTTTCATTCTCGTTGCTGCTGTTGCTGCTGTGACTTACTGTATAT
TTTTGTGATATTATTCTTGATCCCTGACTGAGGAAAAAAAGGCGACATAT
GAACGAAGACAAACTCCTAGTGAAAATGAGTATCAGCAAGAAGAAGTGAG
GATAATTTATCAAGATTATTTTGTGGTTGCAGGACATGATGTAAGAAGTC
TCTTATAAATTCAAACTCAAGAATAGTTTTGACAATTTTTACGGTGCGAA
AGTGCCGTTTTCATCCTCAATTAGGAGGATAGGTTGTTATATGTTGAAGA
ATCATTTTTCCGCCCCTGGATTTCTCGTCTTAGGCTTGTCAATAAAAGCG
GTATCTCATACGCTTCCACCCTCCATAGAAAAGTCGATCCTCCCTTTCTT
CCGGATTTTCCAGGTTGTTCACGAGACGTGTTGTTCATTTTTTCGCATGA
AACTCAATTTTGTTGACGCATATCCTTATTTCGGGGAAAAACTTAACGCC
AACGAATCCGACCTATCTATTATCATGACTAATATTATCTTCATTATTAA
TACTACAACTATTATGAAATGGGGACCCAAGTATGAGATGGGGACCGGGT
GTTTTTTTGGAATGCGAGTAGAGATGGTGTATGTGATTCTCGAGAATAAG
GCCTTTCAAGGAGCAGTCGGTGAAATTGAACACATGGTCAAGATAATGCT
TTCAAATAACATTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig68649:2..717+

>mRNA_H-paniculata_contig68649.14783.1 ID=mRNA_H-paniculata_contig68649.14783.1|Name=mRNA_H-paniculata_contig68649.14783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig68649:2..717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGAAGAATCATTTTTCCGCCCCTGGATTTCTCGTCTTAGGCTTGTC
AATAAAAGCGGTATCTCATACGCTTCCACCCTCCATAGAAAAGTCGATCC
TCCCTTTCTTCCGGATTTTCCAGGTTGTTCACGAGACGTGTTGTTCATTT
TTTCGCATGAAACTCAATTTTGTTGACGCATATCCTTATTTCGGGGAAAA
ACTTAACGCCAACGAATCCGACCTATCTATTATCATGACTAATATTATCT
TCATTATTAATACTACAACTATTATGAAATGGGGACCCAAGTATGAGATG
GGGACCGGGTGTTTTTTTGGAATGCGAGTAGAGATGGTGTATGTGATTCT
CGAGAATAAGGCCTTTCAAGGAGCAGTCGGTGAAATTGAACACATGGTCA
AGATAATGCTTTCAAATAACATTCTGATGTTGAAGAATCATTTTTCCGCC
CCTGGATTTCTCGTCTTAGGCTTGTCAATAAAAGCGGTATCTCATACGCT
TCCACCCTCCATAGAAAAGTCGATCCTCCCTTTCTTCCGGATTTTCCAGG
TTGTTCACGAGACGTGTTGTTCATTTTTTCGCATGAAACTCAATTTTGTT
GACGCATATCCTTATTTCGGGGAAAAACTTAACGCCAACGAATCCGACCT
ATCTATTATCATGACTAATATTATCTTCATTATTAATACTACAACTATTA
TGAAATGGGGACCCAAGTATGAGATGGGGACCGGGTGTTTTTTTGGAATG
CGAGTAGAGATGGTGTATGTGATTCTCGAGAATAAGGCCTTTCAAGGAGC
AGTCGGTGAAATTGAACACATGGTCAAGATAATGCTTTCAAATAACATTC
TG
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