mRNA_H-paniculata_contig68474.14770.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig68474.14770.1
Unique NamemRNA_H-paniculata_contig68474.14770.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.680e-27
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQD-CGVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRP+IA+A    A+ C +P   H  A +  L YV+RT+DLGIT+GR    G+ +  +AD DYA+    RRSVSG  V+  RG ISW +RTQ+      T  EYV+LA+++ EVLFL
Sbjct:   79 LMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFL 201
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BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.240e-25
Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQD-CGVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRPDIA+AV   A+ C +P   H  A +  L YV+RT+DLGIT+ R    G+ +  +AD DYA+    RRSVSG +V+   G +SW +RTQ+      T  EYV+LA+++ EVLFL
Sbjct:   40 LMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFL 162
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BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.940e-25
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQD-CGVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRPDIA+AV   A+ C +P   H  A +  L YV+RT+D GIT+ R    G+ +  +AD DYA+    RRSVSG +V+   G ISW +RTQ+      T  EYV+LA+++ EVLFL
Sbjct:  123 LMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFL 245
[Close]
BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.320e-24
Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQD-CGVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRPDIA+AV   A+ C +P   H  A +  L YV+RT++LGIT+ R    G+ +  +AD DYA+    RRSVSG +V+   G ISW +RTQ+      T  EYV+LA+++ EVLFL
Sbjct:  165 LMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFL 287
[Close]
BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.350e-24
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQD-CGVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRPDIA+AV   A+ C +P   H  A +  L YV+RT+DLGIT+ R    G+ +  + D DYA+    RRSVSG +V+   G ISW +RTQ+      T  EYV+LA+++ EVLFL
Sbjct:  224 LMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFL 346
[Close]
BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.890e-24
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQD-CGVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRPDIA+AV   A+ C +P   H  A +  L YV+RT+DLGIT+ R    G+ +  + D DYA+    RRSVSG +V+   G ISW +RTQ+      T  EYV+LA+++ EVLFL
Sbjct:  398 LMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFL 520
[Close]
BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.240e-24
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQD-CGVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRPDIA+AV   A+ C +P   H  A +  L YV+RT+DLGIT+ R    G+ +  + D DYA+    RRSVSG +V+   G ISW +RTQ+      T  EYV+LA+++ EVLFL
Sbjct:  919 LMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFL 1041
[Close]
BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.290e-24
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQDC-GVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRPDIA+AV   A+ C +P + H +A +  L Y  RT+  GI++ R    G  +  YAD D+A+    RRSVSG +V    GA+SW +RTQ+      T  EYVAL ++V E+LFL
Sbjct:  106 LMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFL 228
[Close]
BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5JA71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA71_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.150e-24
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQD-CGVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRPDIA+AV   A+ C +P      A +  L YV+RT+DLGIT+ R    G+ +  +AD DYA+    RRSVSG +V+   G I W +RTQ+      T  EYV+LA+++ +VLFL
Sbjct:   79 LMWLATQTRPDIANAVRAVARYCASPKEIDCRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCIPWFSRTQKCVTLSTTEAEYVSLADVMKDVLFL 201
[Close]
BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.560e-23
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 LMWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITYGRQDC-GVEILAYAD*DYAACQDSRRSVSGRVVLLRRGAISWHARTQEVTAAGPTGTEYVALAEMVNEVLFL 366
            LMW AT TRPDIA+AV   A+ C +P + H +A +  L Y  RT+  GI++ R    G  +  YAD D+A+    RRSVSG +V    GA+SW +RTQ+      T  EYVAL ++V E+LFL
Sbjct:  248 LMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFL 370
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68474.14770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD60_9PHAE9.680e-2748.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTK6_9PHAE1.240e-2547.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR24_9PHAE6.940e-2547.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0Z9_9PHAE1.320e-2447.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE1.350e-2447.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE2.890e-2447.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE3.240e-2447.97Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KRB4_9PHAE3.290e-2445.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA71_9PHAE5.150e-2446.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE1.560e-2345.53Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig68474contigH-paniculata_contig68474:1..366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig68474.14770.1prot_H-paniculata_contig68474.14770.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig68474 169..363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.866519-UTR-H-paniculata_contig68474:0..1681622930818.866519-UTR-H-paniculata_contig68474:0..168Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68474 1..168 -
1691481466.6298432-UTR-H-paniculata_contig68474:0..1681691481466.6298432-UTR-H-paniculata_contig68474:0..168Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68474 1..168 -
1622930818.8972163-UTR-H-paniculata_contig68474:363..3661622930818.8972163-UTR-H-paniculata_contig68474:363..366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68474 364..366 -
1691481466.6464336-UTR-H-paniculata_contig68474:363..3661691481466.6464336-UTR-H-paniculata_contig68474:363..366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68474 364..366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.879609-CDS-H-paniculata_contig68474:168..3631622930818.879609-CDS-H-paniculata_contig68474:168..363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68474 169..363 -
1691481466.6387196-CDS-H-paniculata_contig68474:168..3631691481466.6387196-CDS-H-paniculata_contig68474:168..363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68474 169..363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig68474.14770.1

>prot_H-paniculata_contig68474.14770.1 ID=prot_H-paniculata_contig68474.14770.1|Name=mRNA_H-paniculata_contig68474.14770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MWAATMTRPDIAHAVCTTAKLCENPGVEHKSAVVKNLQYVLRTADLGITY
GRQDCGVEILAYAD*
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mRNA from alignment at H-paniculata_contig68474:1..366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig68474.14770.1 ID=mRNA_H-paniculata_contig68474.14770.1|Name=mRNA_H-paniculata_contig68474.14770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig68474:1..366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCATGTGGGCGGCGACAATGACACGACCCGACATCGCACACGCCGTATG
CACTACAGCAAAGCTTTGTGAGAACCCAGGGGTGGAGCACAAGAGTGCTG
TGGTGAAAAATCTGCAGTACGTGCTAAGGACCGCAGACCTCGGAATCACC
TACGGTAGACAGGACTGCGGGGTCGAAATATTGGCTTACGCTGACTAGGA
CTACGCAGCGTGCCAGGACAGCCGACGCTCGGTCTCCGGCCGAGTGGTAC
TGCTGAGGAGGGGAGCGATCAGTTGGCACGCGAGAACTCAGGAGGTGACA
GCGGCGGGGCCAACAGGAACCGAGTACGTCGCGTTGGCGGAGATGGTGAA
CGAAGTACTGTTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig68474:1..366-

>mRNA_H-paniculata_contig68474.14770.1 ID=mRNA_H-paniculata_contig68474.14770.1|Name=mRNA_H-paniculata_contig68474.14770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig68474:1..366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGCGGCGACAATGACACGACCCGACATCGCACACGCCGTATGCAC
TACAGCAAAGCTTTGTGAGAACCCAGGGGTGGAGCACAAGAGTGCTGTGG
TGAAAAATCTGCAGTACGTGCTAAGGACCGCAGACCTCGGAATCACCTAC
GGTAGACAGGACTGCGGGGTCGAAATATTGGCTTACGCTGACTAGATGTG
GGCGGCGACAATGACACGACCCGACATCGCACACGCCGTATGCACTACAG
CAAAGCTTTGTGAGAACCCAGGGGTGGAGCACAAGAGTGCTGTGGTGAAA
AATCTGCAGTACGTGCTAAGGACCGCAGACCTCGGAATCACCTACGGTAG
ACAGGACTGCGGGGTCGAAATATTGGCTTACGCTGACTAG
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