mRNA_H-paniculata_contig6841.14767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6841.14767.1
Unique NamemRNA_H-paniculata_contig6841.14767.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE)

HSP 1 Score: 664 bits (1714), Expect = 3.540e-224
Identity = 392/757 (51.78%), Postives = 481/757 (63.54%), Query Frame = 3
Query:  261 TSAKTVIICGKEVALQ--GGGKRRKLPVETMVLTAYKKELALTCKANDMVSALEMYSEMKAKGIKQDLGIHQMVLAVCGGSPGEKDTLDPGNGATPSANAAAXXXXXXXXXXXXXXXXXXXGSPGTVAG-SAQQNTAMAADAAIQILEDVTKDPEGNDNYLPESAYTGVIRACCLDGRADKGREVLERLKRTRTRPRLRTYAPLLEVYARLEGRLQDCMAVWREAVSR----EQQLTMTEREYLSLIKACTRAKDESCFAEVMSEYMEDVLQPRSRASWDVLKAWFRVAPS--------------ESSAGVDTEDGERGRPPNG-ICSVGSAREGPKNGAGREEVSTAVTPIVETKEEFVASPRR--DEAGNEGIAEG----EKAGTAEE------EGGEAAGKHQAP-------------DRDNPVESAASIVAAPSAD-------------------VPIAPAAAGTEENGNGCSVAVVAVVTTAMDRVECGAGEAVTSAYG-KGWKVSECKVAPDGSCQSCGEILTSIELSADEEQRLLKQVEVLVCTNEKRTKQWEGYTGWLERHARERYNVIIDGANVGYYKKGAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIVNRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLSHRSFERWKERHQTRFTFGDWR-----EDMREVLADEPRAYSKRTQMGNEGKSWHFPLEGSNDWLCANRQ 2315
            T+A  + ICGKE+ LQ  GG K+RK P+ET++L AYK+EL L CKAN+M+SALE++ EMK+KGIKQDL  H MVL++CGGSPG++D LDPGNG+T   +AA+                    + G V G SAQ NT  AA+AA+QI  D +K   G    LPESAYT VIRACC DGRAD+ RE LE LK+   +PR+RTY PLLE Y++L+GRL+DCMA+WREAVS     +Q +TMTEREYL LI ACTRA+DE CF EVM+EYM+DVLQPRSR SWDVLK+WF+V P+               ++A    E+GE   P +G +   G   EG    +G+E  +T+            A+P    D AG  G+ +      KA  A E      +G        AP             D  +  ++  +   +P A                    +  AP A G E  G    VA    V  A  R +   GE    + G  GW V+EC V  DG+C++CGE++ SIELS D+EQRLLKQ+E LVCTNE+RT QWEG+ GWLER  ++RYNVIIDGANVGYYK   ++ GELADL+QVDWAVKKF+ EGKKPLVVLHSRHL  +RLS E+KEI  RW+E   +QSCAP NNDDWYWLYAAV  GG VLVLTNDEMRDHHFSMLSHRSF+RWKERHQ RF FGDW+     +D REV+ +EPR+YSKRTQ G +  SWH PLE S DWLCA  Q
Sbjct:  106 TTAGKITICGKEITLQHTGGRKKRKHPMETLILLAYKEELTLKCKANNMISALEIHQEMKSKGIKQDLSTHMMVLSLCGGSPGDRDELDPGNGST-GGHAASVERTAAAV------------AKGRVEGASAQDNTFAAAEAALQIFSDASK---GGTVSLPESAYTAVIRACCRDGRADRAREALEALKQAGLKPRVRTYTPLLEAYSKLDGRLEDCMALWREAVSPPGGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKSWFKVGPNVIGNGYVKHREVAAATTARTKPEEGEIENPRSGELPDNGGISEGDGGESGQESTATSGA--------AAAAPTLAGDAAGAPGVGDSAPSLSKAVVATEPPSARPDGSHGTDSALAPASSSXXXXXXXQADGSSGDDATGAAATSPRAAGAYAVGRSFQADGCGGDDAMEDAPQADGDEAVGGPTPVAGEDAVEEASPRADAAGGEKEPPSGGTSGWIVTECYVRKDGTCENCGEVMRSIELSEDDEQRLLKQIEELVCTNEQRTHQWEGFRGWLERRGKQRYNVIIDGANVGYYKACLSE-GELADLRQVDWAVKKFQDEGKKPLVVLHSRHLVEKRLSDEAKEIYKRWKEADMIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKGEGGDDDEREVITEEPRSYSKRTQKGVD--SWHVPLERSRDWLCARWQ 835          
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: D7FNK6_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK6_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 1.110e-101
Identity = 219/486 (45.06%), Postives = 270/486 (55.56%), Query Frame = 3
Query:  261 TSAKTVIICGKEVALQ--GGGKRRKLPVETMVLTAYKKELALTCKANDMVSALEMYSEMKAKGIKQDLGIHQMVLAVCGGSPGEKDTLDPGNGATPSANAAAXXXXXXXXXXXXXXXXXXXGSPGTVAG-SAQQNTAMAADAAIQILEDVTKDPEGNDNYLPESAYTGVIRACCLDGRADKGREVLERLKRTRTRPRLRTYAPLLEVYARLEGRLQDCMAVWREAVSR----EQQLTMTEREYLSLIKACTRAKDESCFAEVMSEYMEDVLQPRSRASWDVLKAWFRVAPSESSAGVDTEDGERGRPPNGICSVGSAREGPKNGAGREEVSTAVTPIVETKEEFVASPRRDEAGNEGIAEGEKAGTAEEEGGEAAGKHQAPDRDNPVESAASIVAAPSADVPIAPAAAGTEENGNGCSVAVVAVVTTAMDRVECGAGEAVTSAYGKG-WKVSECKVAPDGSCQSCGEILTSIELSADEEQRLLKQV 1694
            T+A  + ICGKE+ LQ  GG K+RK P+ET++L AYK EL L CKAN+MVSALE++ EMK+KGIKQDL  H MVL++CGGSPG++D LDPGNG T   +AA+                    + G V G SAQ NT  AA+AA+QI  D +K   G    LPESAYT VIRACC DGRAD+ RE LE LK+   +PR+RTY PLLE Y++L+GRL+DCM +WREAVS     +Q +TMTEREYL LI ACTRA+DE CF EVM+EYM+DVLQPRSR SWDVLKAWF+    +   G D                G+A   P+  AG + V  +             S          + EG                                          AP A G E  G+   VA            +   GE    + G G W V EC V  DG+C++CGE++ SIELS D+EQRLLKQV
Sbjct:  105 TTAGKITICGKEITLQHTGGRKKRKHPMETLILLAYKDELTLKCKANNMVSALEIHQEMKSKGIKQDLSTHMMVLSLCGGSPGDRDELDPGNGLT-GGHAASVERTAAAV------------AKGRVEGASAQDNTFAAAEAALQIFSDASK---GGTVSLPESAYTAVIRACCRDGRADRAREALEALKQADLKPRVRTYTPLLEAYSKLDGRLEDCMTLWREAVSPPAGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKAWFKA---DGGGGDDA--------------TGAATTSPR-AAGADAVGRS-------------SQXXXXXXXXDVMEG------------------------------------------APQADGDEAVGDPPPVAGKDAXXXXXXXXDAAGGEKKPPSGGAGSWIVRECYVRKDGTCENCGEVMRSIELSEDDEQRLLKQV 501          
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: A0A7S2BW17_9STRA (Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW17_9STRA)

HSP 1 Score: 209 bits (531), Expect = 8.440e-54
Identity = 111/232 (47.84%), Postives = 146/232 (62.93%), Query Frame = 3
Query: 1614 GSCQSCGEILTSIELSADEEQRLLKQVEVLV-CTNEKRTKQWEGYTGWLERHARER-------YNVIIDGANVGYYKKGAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIVNRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLSHRSFERWKERHQTRFTFGDWREDMR---EVLADEPRAYSKRTQMGNEGKSWHFP 2276
            G C +CG  L SI+LS +  QR+L+QV  L     EK  K W+ +T WL R   ++        +VIIDGANVGYYK+  A   +  D +Q+D  ++ FEA GK+ ++ LH RHL  + L  + + IV RWRE K + +    +NDDWYWLYAA+ +GG V ++TNDEMRDHHF MLSHR F+RWKERHQ  F F   RE +R   EV+   P AYS R Q  ++GK+WH P
Sbjct:  348 GVCGACGTKLRSIDLSEEHRQRMLEQVAGLARAGGEKSCKAWKCFTDWLSRRRDKQAANQVTGMDVIIDGANVGYYKQNFAGAPKHVDYEQIDQIIRHFEAAGKQVMLFLHKRHLFEQNLPAKYRHIVERWREQKVMYNTPVGSNDDWYWLYAALWLGGSVQLVTNDEMRDHHFQMLSHRDFQRWKERHQVHFEFS--REGIRGHREVVTYAPPAYSVRMQEDSKGKAWHVP 577          
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: K3WUG8_GLOUD (Ribonuclease P n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUG8_GLOUD)

HSP 1 Score: 204 bits (519), Expect = 1.470e-53
Identity = 107/245 (43.67%), Postives = 145/245 (59.18%), Query Frame = 3
Query: 1572 GKGWKVSECKVAPDGSCQSCGEILTSIELSADEEQRLLKQVEVLVCTNEKRTKQWEGYTGWLERHARERYNVIIDGANVGYYKKGAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIVNRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLSHRSFERWKERHQTRFTFGDWREDMREVLADEPRAYSKRTQMGNEGKSWHFPLEGSNDWLCA 2306
            GK W  S   V   G C   G+ L SIEL    E +LL+++E LV T+E+RT QWE +  WL  H    ++V+ID ANVGY+ +     G   D KQ++  +  +E + K+ L+VLH R    E++  E + +V +W E + + +C P NNDDWYWLYAAV +GGR L +TNDEMRDHHF M+  R+F RWKERHQT +  G        +   EP  +S R Q    G +WHFP   S++WLC 
Sbjct:  244 GKKWTCSVGSVDDKGVCSVTGDQLQSIELPPALETKLLEKIESLVTTDERRTAQWEAFKTWLSEHGP--FDVVIDAANVGYFNQNYDGGG--FDYKQIETLLTHYEQQDKRVLIVLHKRRTMDEQVPAEHRAMVAQWAERRIMFNCLPGNNDDWYWLYAAVRLGGRTLAVTNDEMRDHHFQMIHDRAFARWKERHQTHYEVGA------RLRLHEPTPFSVRPQ--RIGGNWHFPCTDSSEWLCV 476          
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: A0A1V9ZIW2_9STRA (Ribonuclease P n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIW2_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.530e-53
Identity = 103/248 (41.53%), Postives = 148/248 (59.68%), Query Frame = 3
Query: 1578 GWKVSECKVAPDGSCQSCGEILTSIELSADEEQRLLKQVEVLVCTNEKRTKQWEGYTGWLERHARERYNVIIDGANVGYYKKGAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIVNRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLSHRSFERWKERHQTRFTFGDWREDMREVLADEPRAYSKRTQMGNEGKSWHFPLEGSNDWLCANRQ*E 2321
            GW V    V   G C   G  L S+ELS  ++  L+ +VE LVCT+++RT+QW  +  WL+ +    ++VI+D AN+GY+ +     G     +Q+   +  ++A GKK L+VLH R  +  ++  + + +V  WR+D  + +C P NNDDWYWLYAAV +GGR LV++NDEMRDHHF M+ +  F RWKERH   +      +D    + DEPR YSKR+Q  +  KSWHFP      WL A+ + E
Sbjct:  233 GWTVETGTVDESGVCSVTGSTLESVELSEAKQAALMTKVEGLVCTSDERTEQWAAFKEWLDTNGP--FDVILDAANIGYFSQNYEGGG--FSYRQIQRVLSAYQARGKKVLIVLHKRRTSDRQVPEDLRPLVQAWRDDGVMYNCLPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNVDFHRWKERHLVHYD-----KDAGRFIFDEPRVYSKRSQ--HLAKSWHFPTPDKETWLVAHSKAE 469          
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: A0A8K1CJM4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJM4_PYTOL)

HSP 1 Score: 204 bits (519), Expect = 2.140e-53
Identity = 106/247 (42.91%), Postives = 150/247 (60.73%), Query Frame = 3
Query: 1569 YGKGWKVSECKVAPDGSCQSCGEILTSIELSADEEQRLLKQVEVLVCTNEKRTKQWEGYTGWLERHARERYNVIIDGANVGYYKKGAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIVNRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLSHRSFERWKERHQTRFTFGDWREDMREVLADEPRAYSKRTQMGNEGKSWHFPLE--GSNDWLC 2303
            +G+GWK S   V+  G     G+ L S+EL  ++   LL ++E LV T+EKR +QW  +  WL+ H    + ++ID ANVGY+ +  +  G     KQ++   + +EA+GKK L+VLH R    +++ TE +E +  W E   + +C   NNDDWYWLYAAV +GGR L++TNDEMRDHHF M+ +RSF RWKERHQ  ++   W     +V  +EP  YS R Q    G +WHFP     S++WLC
Sbjct:  253 HGRGWKCSVGSVSDQGISSVNGDQLISLELPEEDASALLAKIESLVRTDEKRIEQWAEFKAWLDEHGP--FEILIDAANVGYFAQNYSGGG--FSYKQIESMYRHYEAQGKKTLIVLHKRRTYDDQVPTEYRETLKTWLEQNVMYNCRSGNNDDWYWLYAAVKLGGRTLMVTNDEMRDHHFQMIHNRSFTRWKERHQVHYSI-HWET---QVKVNEPSVYSVRPQ--RVGDNWHFPSSDPSSSEWLC 489          
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: A0A024UCX6_9STRA (Ribonuclease P n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCX6_9STRA)

HSP 1 Score: 203 bits (516), Expect = 3.760e-53
Identity = 102/245 (41.63%), Postives = 150/245 (61.22%), Query Frame = 3
Query: 1581 WKVSECKVAPDGSCQSCGEILTSIELSADEEQRLLKQVEVLVCTNEKRTKQWEGYTGWLERHARERYNVIIDGANVGYYKKGAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIVNRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLSHRSFERWKERHQTRFTFGDWREDMREVLADEPRAYSKRTQMGNEGKSWHFPLEGSNDWLCANRQ 2315
            W  +  +V   G C   G  L S+ELSA+++Q LL +VE LVCT+++R  QW  +  WL+ H    ++VIID ANVGY+ +     G   +  Q+   V+ ++++G  PL+VLH R     ++  + + +V +W+++KT+ +C   NNDDWYWLYAAV +GGR LV++NDEMRDHHF M+ ++ F RWKERH   +           V+  EP  YSKR+Q  +   SWHFP   S+DWL  +R+
Sbjct:  243 WLCNVGEVNKAGICSVTGSTLQSVELSAEKQQALLTKVENLVCTSDERVAQWAAFKAWLDEHGP--FDVIIDAANVGYFNQNFEGGG--FNYGQIQTVVQAYQSKGLTPLIVLHKRRTKDNQVPAQHRAMVQQWKDEKTMFNCEYGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNQDFHRWKERHLVHYEVRG-----HNVVLHEPSVYSKRSQ--HLASSWHFPTTSSSDWLVFHRR 476          
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: H3H2L4_PHYRM (Ribonuclease P n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2L4_PHYRM)

HSP 1 Score: 201 bits (512), Expect = 1.430e-52
Identity = 110/246 (44.72%), Postives = 145/246 (58.94%), Query Frame = 3
Query: 1572 GKGWKVSECKVAPDGSCQSCGEILTSIELSADEEQRLLKQVEVLVCTNEKRTKQWEGYTGWLERHARERYNVIIDGANVGYYKKGAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIVNRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLSHRSFERWKERHQTRF-TFGDWREDMREVLADEPRAYSKRTQMGNEGKSWHFPLEGSNDWLCA 2306
            G+ WK++E  V+ +G C   G+ L S+EL A+ E  LL +VE LV T+EKRT QW+ +  WL       ++VIID ANVGY  +     G   +  Q++  V+ +EA G KPL+VLH R    E++  E +  V +WR    + +C P NNDDWYWLYAAV +GGR L+++NDEMRDHHF M+ +R+F RWKERHQ  +   GD       V  DEP  YS R Q    G  WHFP      WL  
Sbjct:  248 GRKWKITEGTVSEEGVCSVTGDQLQSLELEAELEAELLAKVEKLVRTDEKRTAQWDAFKQWLGEFGP--FDVIIDAANVGYCNQNFDGGG--FNYAQIELMVQHYEARGNKPLLVLHERRTWDEQVPAEHRAQVAQWRASHKMFNCQPGNNDDWYWLYAAVKLGGRTLMISNDEMRDHHFQMIHNRAFGRWKERHQVHYQVHGD------RVTVDEPLPYSARPQ--RVGDVWHFPAAADPRWLAV 481          
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: A0A1V9YXD0_9STRA (Ribonuclease P n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.560e-52
Identity = 104/246 (42.28%), Postives = 149/246 (60.57%), Query Frame = 3
Query: 1575 KGWKVSECKVAPDGSCQSCGEILTSIELSADEEQRLLKQVEVLVCTNEKRTKQWEGYTGWLERHARERYNVIIDGANVGYYKKGAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIVNRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLSHRSFERWKERHQTRFTFGDWREDMREVLADEPRAYSKRTQMGNEGKSWHFPLEGSNDWLCANR 2312
            +G+   E  V  DG C   G  L SIELS ++E  LLK+VE LVCT+++RT+QW  +  W++ +    Y+V++D AN+GY+ +     G   + KQ+   ++ ++  GKK L+VLH R  + + +    + +V  WR+   + +C P NNDDWYWLYAAV   GR LV++NDEMRDHHF M+S   F RWKERH  R+   +        + DEPR YSKR+Q  N+  SWHFP    + WL A++
Sbjct:  227 EGFTCKEGTVNEDGICSVTGAKLLSIELSKEKEDILLKKVEGLVCTSDERTEQWNEFKSWIDENGP--YDVLLDAANIGYFNQNYEGGG--FNYKQIQRVLQAYQRRGKKVLIVLHKRRTSDKEVPEHLRSMVAGWRDKNEMYNCRPGNNDDWYWLYAAVNFSGRTLVVSNDEMRDHHFQMISGVDFHRWKERHLVRYDKKNGN-----FVFDEPRVYSKRSQHVND--SWHFPTPDKDKWLVAHK 461          
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Match: A0A7S2SKI7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKI7_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.730e-52
Identity = 99/219 (45.21%), Postives = 137/219 (62.56%), Query Frame = 3
Query: 1641 LTSIELSADEEQRLLKQVEVLVCTNEKRTKQWEGYTGWLERHARERYNVIIDGANVGYYKKGAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIVNRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLSHRSFERWKERHQTRFTFGDWREDMR--EVLADEPRAYSKRTQMGNEGKS-----WHFP 2276
            L SI+L  +E QR+L+QV  L  T +    +W G+TGWLER  R  ++V++DGANVGY+K+      +  + +Q+D  V+ F+A+GK+ L+ LH RHL P+ L     ++  RW+ +KTL +    +NDDW+WLYAAV +   V V+TNDEMRDHHF MLSHRSF+RWKERHQ  + FG +   +R   V+   P  YS R Q   +  S     WH P
Sbjct:   82 LRSIDLGGEERQRMLEQVSELALTGKDGAAKWAGFTGWLERKGRTAFDVLVDGANVGYFKQNYPGAPKHVNYEQIDCVVRHFQAQGKRVLLFLHQRHLFPQNLPASCVDLTKRWKSEKTLFTTPVGSNDDWFWLYAAVWLEN-VQVVTNDEMRDHHFRMLSHRSFQRWKERHQIHYEFGGFDSSLRGRRVITHVPPTYSIRMQASTDPTSGEVTAWHVP 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6841.14767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB75_9PHAE3.540e-22451.78Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FNK6_ECTSI1.110e-10145.06PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2BW17_9STRA8.440e-5447.84Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35... [more]
K3WUG8_GLOUD1.470e-5343.67Ribonuclease P n=1 Tax=Globisporangium ultimum (st... [more]
A0A1V9ZIW2_9STRA1.530e-5341.53Ribonuclease P n=1 Tax=Achlya hypogyna TaxID=12027... [more]
A0A8K1CJM4_PYTOL2.140e-5342.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024UCX6_9STRA3.760e-5341.63Ribonuclease P n=3 Tax=Aphanomyces invadans TaxID=... [more]
H3H2L4_PHYRM1.430e-5244.72Ribonuclease P n=1 Tax=Phytophthora ramorum TaxID=... [more]
A0A1V9YXD0_9STRA1.560e-5242.28Ribonuclease P n=1 Tax=Thraustotheca clavata TaxID... [more]
A0A7S2SKI7_9STRA1.730e-5245.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6841contigH-paniculata_contig6841:3740..11676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue9.8e-61
Seed eggNOG ortholog36331.EPrPI00000020370
KEGG koko:K17655,ko:K18213
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MF35@121069,COG0534@1,KOG1347@2759
Ec32 ortholog descriptionRibonuclease Zc3h12a-like
Ec32 orthologEc-01_005100.1
EC3.1.26.5
COG Functional cat.V
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko03029
Exons9
Model size2759
Cds size2295
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.1435037-UTR-H-paniculata_contig6841:3739..37621622930818.1435037-UTR-H-paniculata_contig6841:3739..3762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6841 3740..3762 +
1691481466.289706-UTR-H-paniculata_contig6841:3739..37621691481466.289706-UTR-H-paniculata_contig6841:3739..3762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6841 3740..3762 +
1622930818.286641-UTR-H-paniculata_contig6841:11235..116761622930818.286641-UTR-H-paniculata_contig6841:11235..11676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6841 11236..11676 +
1691481466.4039478-UTR-H-paniculata_contig6841:11235..116761691481466.4039478-UTR-H-paniculata_contig6841:11235..11676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6841 11236..11676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.1596417-CDS-H-paniculata_contig6841:3762..42001622930818.1596417-CDS-H-paniculata_contig6841:3762..4200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 3763..4200 +
1691481466.300395-CDS-H-paniculata_contig6841:3762..42001691481466.300395-CDS-H-paniculata_contig6841:3762..4200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 3763..4200 +
1622930818.1788104-CDS-H-paniculata_contig6841:5280..55051622930818.1788104-CDS-H-paniculata_contig6841:5280..5505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 5281..5505 +
1691481466.308206-CDS-H-paniculata_contig6841:5280..55051691481466.308206-CDS-H-paniculata_contig6841:5280..5505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 5281..5505 +
1622930818.1952858-CDS-H-paniculata_contig6841:6060..62211622930818.1952858-CDS-H-paniculata_contig6841:6060..6221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 6061..6221 +
1691481466.317125-CDS-H-paniculata_contig6841:6060..62211691481466.317125-CDS-H-paniculata_contig6841:6060..6221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 6061..6221 +
1622930818.210406-CDS-H-paniculata_contig6841:6430..65951622930818.210406-CDS-H-paniculata_contig6841:6430..6595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 6431..6595 +
1691481466.3271508-CDS-H-paniculata_contig6841:6430..65951691481466.3271508-CDS-H-paniculata_contig6841:6430..6595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 6431..6595 +
1622930818.223235-CDS-H-paniculata_contig6841:6899..75781622930818.223235-CDS-H-paniculata_contig6841:6899..7578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 6900..7578 +
1691481466.343232-CDS-H-paniculata_contig6841:6899..75781691481466.343232-CDS-H-paniculata_contig6841:6899..7578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 6900..7578 +
1622930818.2346947-CDS-H-paniculata_contig6841:9019..92231622930818.2346947-CDS-H-paniculata_contig6841:9019..9223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 9020..9223 +
1691481466.3563592-CDS-H-paniculata_contig6841:9019..92231691481466.3563592-CDS-H-paniculata_contig6841:9019..9223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 9020..9223 +
1622930818.2464597-CDS-H-paniculata_contig6841:9983..100661622930818.2464597-CDS-H-paniculata_contig6841:9983..10066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 9984..10066 +
1691481466.365864-CDS-H-paniculata_contig6841:9983..100661691481466.365864-CDS-H-paniculata_contig6841:9983..10066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 9984..10066 +
1622930818.2589233-CDS-H-paniculata_contig6841:10505..106861622930818.2589233-CDS-H-paniculata_contig6841:10505..10686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 10506..10686 +
1691481466.3751454-CDS-H-paniculata_contig6841:10505..106861691481466.3751454-CDS-H-paniculata_contig6841:10505..10686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 10506..10686 +
1622930818.2707174-CDS-H-paniculata_contig6841:11076..112351622930818.2707174-CDS-H-paniculata_contig6841:11076..11235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 11077..11235 +
1691481466.386793-CDS-H-paniculata_contig6841:11076..112351691481466.386793-CDS-H-paniculata_contig6841:11076..11235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6841 11077..11235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6841.14767.1prot_H-paniculata_contig6841.14767.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6841 3763..11235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6841.14767.1

>prot_H-paniculata_contig6841.14767.1 ID=prot_H-paniculata_contig6841.14767.1|Name=mRNA_H-paniculata_contig6841.14767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=765bp
MSSELKRKREEPDTPQKRREEETTEPAGDNGLPYLTHPLPGEAAPAPITK
SSTAATPATVSNAPQASPAGAGSGPRLSGTSAKTVIICGKEVALQGGGKR
RKLPVETMVLTAYKKELALTCKANDMVSALEMYSEMKAKGIKQDLGIHQM
VLAVCGGSPGEKDTLDPGNGATPSANAAANSSSSSANNRVASSASSAVGS
PGTVAGSAQQNTAMAADAAIQILEDVTKDPEGNDNYLPESAYTGVIRACC
LDGRADKGREVLERLKRTRTRPRLRTYAPLLEVYARLEGRLQDCMAVWRE
AVSREQQLTMTEREYLSLIKACTRAKDESCFAEVMSEYMEDVLQPRSRAS
WDVLKAWFRVAPSESSAGVDTEDGERGRPPNGICSVGSAREGPKNGAGRE
EVSTAVTPIVETKEEFVASPRRDEAGNEGIAEGEKAGTAEEEGGEAAGKH
QAPDRDNPVESAASIVAAPSADVPIAPAAAGTEENGNGCSVAVVAVVTTA
MDRVECGAGEAVTSAYGKGWKVSECKVAPDGSCQSCGEILTSIELSADEE
QRLLKQVEVLVCTNEKRTKQWEGYTGWLERHARERYNVIIDGANVGYYKK
GAADTGELADLKQVDWAVKKFEAEGKKPLVVLHSRHLAPERLSTESKEIV
NRWREDKTLQSCAPNNNDDWYWLYAAVLIGGRVLVLTNDEMRDHHFSMLS
HRSFERWKERHQTRFTFGDWREDMREVLADEPRAYSKRTQMGNEGKSWHF
PLEGSNDWLCANRQ*
back to top

mRNA from alignment at H-paniculata_contig6841:3740..11676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6841.14767.1 ID=mRNA_H-paniculata_contig6841.14767.1|Name=mRNA_H-paniculata_contig6841.14767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7937bp|location=Sequence derived from alignment at H-paniculata_contig6841:3740..11676+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACAGTAGTTGTGGATTGAAACATGTCATCAGAGCTGAAGCGCAAACGT GAAGAACCGGACACGCCACAGAAACGGCGAGAAGAAGAAACGACCGAACC AGCTGGGGACAATGGCCTGCCTTATTTGACGCACCCTCTCCCTGGAGAGG CGGCACCCGCCCCTATCACTAAGTCCAGCACCGCTGCTACACCAGCAACG GTGAGTAATGCGCCCCAAGCATCGCCCGCTGGAGCTGGGTCTGGCCCTCG ACTATCAGGCACCTCTGCAAAAACAGTGATAATATGCGGCAAGGAGGTGG CTTTGCAAGGCGGCGGGAAGAGGCGAAAGCTACCCGTGGAGACCATGGTG TTGACGGCGTACAAGAAGGAGCTGGCTCTAACGTGCAAGGCGAACGACAT GGTGTCGGCTCTGGAGATGTACAGTGAGATGAAGGCCAAGGGTATCAAGC AAGATCTCGGGGTGCGTGCGCAAGTGCCACTGCTGCTACCACTGCTGCTG CTGGTATATGCTATGTGGTCGTTGTGCTATGCTTTTGATATCGGCTTTCT GTATGATACGGCGCATACCAGATTCGCAGTTCAGTAGAGTGGAGTACATT CATGTGCGCCATCTAGAGTACTGGTGATTTATACAGGGCAGTATAGATAC GCTATTAAAAAACCTACGACCCCATGCACGCCTCTACATTGGTTAGATCT GTACCCTTGTATGAAGCGTAGATCTGCGGTTAAATCGCCTCAGGCGCTTC TAAGTTTCTGTCTTGGAGAAAAAAATATTTTTGCCCAATTTCATCCACCC CAGGGCACAACCGCTGTCGCGACAAGAAAACCCTGGACATCAACGAGTAC ATTGTAGTGCAGCCCATATTTTGCCGTCATGCGTGACGCAACATGAACCG TAAGGTATATTGCCGCCCGTTGACCTTTTGCGAGTATTTGACCTTGCCAG CGCGTTGTCAACCAGTGTACAAGCTCCGTGTCCAAGGTGACGATCTTTGC AGACAATGTGCTGGCTACCTCACTTACTCTGGAGGATATTGCAGTTGTAG TGTATGGGCAACAATCCCCAGAGCCCACGTGCCGCATGTGTTTGTTGCGC AGAGCGTTCCAGGTATACCTGTTTGTGTCGTTCCCCTTTCACACCAAAGC GCCGATTGTGAAAACATGTTGTCATCTCTCGACATACACCCCCGCTACGC CACTATATACATGAATAAGCCTCATCGTCGGAGATTTCTAACGATGATAA ATAGTTCGTTGTGGACGAAAACGAGAATTGTGTGCACTTCAACCGTGAAA CTTGGCGCGTGTCCAAATCGCTTCATACTCCAAGGGAAGGTAGCATGTAA ATGTAATTCCATTTGTATATAAAATGAAATGTTACGAGATGGCAATTACA GTGCAGTTCCAACCCCACTTGTATCCCCGCAAGATTCGTGGCTGGTTCAG GCTTCTTGGCCTCACGTTCAACGATTTACCTCAAGCTTTATTCTAAATGT TGGTTGGTCCTACGGCCTATATTTTGGAAATGGCACCTCAGATCCATCAG ATGGTCCTGGCGGTGTGCGGAGGCTCCCCTGGCGAAAAGGATACCCTCGA CCCCGGCAACGGGGCCACCCCGAGCGCTAACGCCGCCGCTAATAGTAGCA GTAGCAGCGCCAACAACCGCGTCGCCAGCTCCGCGTCTAGTGCGGTCGGG TCGCCAGGGACGGTAGCCGGATCTGCGCAACAGAACACGGCGATGGCTGC GGACGCGGCAATCCAGGTGTGTACAAGTAAAGCGTAGGTCGTTACGAAGT TTTTCACACATCTCTTTCGAGATGCGGGGTCCATGTCATGGTTAGATATA TCAACTCTCCCCGCGTTGATTGCTTTTACTGTATTAGTAGTCAGTCAGGC CACAGCTGTGTACAGCTACGCCGGTAAACGGTTACATGTTTCATCGTCGA CTCGAAAGCAAACTCTCACTGCGCTCGCGGGTGGTATGCTAGAGCTCTAG TCCATGAAAGAGTGGTGTTTTAGATGTTACTTGGGATACAGAGCTTGAAA ACTATTTTTTCGAGACGGGCCATCATCTGCCACCGTATTCGCGTATTATT TCAAATGTTCAATGCGGATACTCTGTTCGCTATTTTTGACACCGCGTTCT CTATTGGCTCTCTATGTGAATCAAGCAGATGCACTATTCAAAGGGCATTT GTGTCCCTGCCCTTACTTGATAACCCTCAAGCCTCTTTTTTGTGTGTGTT TTGTCTACATGTATGTTACTCAAACCGTCCGGGTTTTTTCCGGCCTCACA TCCCTTGATTCGACAGTACAGATTTTGGAGGATGTTACGAAAGACCCAGA AGGCAACGATAATTATCTGCCCGAATCGGCCTACACGGGCGTGATTCGCG CGTGTTGCCTGGATGGGCGGGCGGATAAGGGCAGGGAAGTGCTGGAACGT CTCAAGCGAACACGGACACGGCCGCGCTTGAGGTGTGTATGTGTGTATGT GTGTTTGCATGTGCATGTGCATGTGCGTATGCGCGCCACATTTTTGTTTG CTCTGATAACCCTTCAGTAGTCTTCTACAGATATGATATCATGGGACCAA GTCTAGCTCTCCCTGTTCAGTTGTTGCAGTAGTTGTTAAGCGCGCCTTCA GTTATCAATTACAAATTATTTTCCCCCCCGACTCCCACCAGGACGTATGC GCCGTTACTGGAGGTATACGCAAGGCTAGAGGGAAGGCTGCAAGACTGCA TGGCGGTGTGGCGAGAGGCCGTATCTCGTGAGCAACAGTTAACCATGACT GAGCGGGAGTACTTGAGCCTTATCAAGGCATGCACCCGGGCTAAGGATGA GAGTTGGTCAGTGAGCCGTACAGGAAATGATGTTGCGGGTGGATACAATA CAATAGCGGAGGCGAGTTATCTCGTGGCTGGCCGTGTTTCTCGTCTAATG TGTCAAGAAGATTCTGAGAAATCACTTGGATAATCGGACAGAAATTGCTC CGTATTTAGTTTATCATCGTCAGCGGCCAAAAAAAGATGAGGATTCCATG TCTTGTGTATTGTACCTTTATGCTCTCGATTGCAGCTGATGATACTGTAT GTATGCTTGTGCCCAATACCTGTGATGCTGTCCGCTTCGTCCCTGTTATG TTCCCGCCAGCTTCGCAGAGGTGATGAGCGAGTACATGGAGGATGTGCTA CAACCGCGCAGCCGAGCAAGTTGGGACGTGCTTAAGGCGTGGTTTAGGGT AGCTCCTAGTGAATCTAGTGCTGGTGTTGACACGGAGGACGGCGAGCGAG GGAGGCCGCCGAATGGGATATGCTCGGTCGGTTCAGCGAGAGAGGGTCCC AAGAATGGTGCAGGTAGAGAGGAGGTATCGACGGCTGTAACACCCATTGT TGAGACCAAAGAAGAGTTTGTTGCATCACCCAGGCGAGACGAGGCAGGAA ACGAGGGAATAGCAGAGGGAGAGAAGGCCGGAACAGCAGAGGAAGAGGGA GGGGAAGCAGCAGGCAAACACCAAGCTCCGGACCGGGATAATCCGGTCGA GTCGGCCGCGAGCATCGTTGCTGCTCCTTCCGCCGATGTACCCATTGCCC CTGCTGCAGCTGGTACGGAGGAGAATGGTAATGGTTGCAGTGTTGCAGTT GTTGCTGTTGTCACAACAGCGATGGATCGTGTAGAGTGTGGGGCAGGAGA GGCGGTCACGAGTGCGTATGGGAAAGGATGGAAGGTATCAGAGTGCAAGG TCGCGCCGGATGGGTCGTGTCAGAGCTGCGGAGAAATACTGACATCGATA GAGCTCTCGGCAGATGAGGAGCAACGACTGCTGAAACAGGTGACGTCTGT TCATTTTCTTTTGTCGGTATGGGGATGGGTGCGAGGGTGGGGAGGGGTGA TATCTAAGCCAACTAAAAGGGAGCCAGCGACGAACGGGTAGTTGTGATAT GTCGGAGCACCGTGGATATGGCGTTGTCTGAGGTGTTGTGTCATCCATTC TTCTCAACGAGAACCATTGTGGAGATGTAGTGTGTAGGGTAGATTTTTGC AAGCCGTTAAAGGATATAATCTTGGCAAGAGTAAAAAAATCTAACGCAAG AGAAATCTCTAGTAAAACAGAAGCAGAACAAAGCGCTGACTCCAGTGACG AAAATGATTGAATGCTCGATCGATCGGATGTTTTTGGGATTTTTCCAGAA ATACCCCGGGATAAGACGAACACATCCTAAACACCTACTGAGGGGATAGG TTAAATGCTTTCGGTGTGCGAAATAAAAGATCTTACCTAGCTCGATATAT ACTTCCTCTGTCTCATAAGTTAGGGTACCTAAATTTGTACGGGCCCTTAA CCGTGTCCGATCTGTTTTTCGATTTTTTCGTTGAAATCTTCGGTGTTTTT TTAGTAAAAGCATGTTTTTTTTTTTTCAGCTGGTGCTTGAACCATGCGGC CGAACGGCCAAAAATCAGTCGGCCCAAAAATGGCCGTATTTCACGCCTTT CCCACGGGAAAGAAAGTGTCGGAATCTCTACCGCCATTGCAATCTCTACC CCCATTCCGTAGCGGCGACCAACCGATCTGTCGGCGCCCCGTTTGCGAGG TGGGGGTGTGCTGGGGGGCGAGTCCATCGCCAGAATGGGTAGTGGGCAGG TGGGGTAATAAATTTGGACGCTTTTGAGAATTCTCAACTAAAGTTCTCAA AAAAAATTCTCAAAACTATTCCCAAAATAGGCCAAAATAGGGTATATTTT GACCCATTTTAGGTAAAGAAATAGAACTCCGTTTTTTTTGTTTTTTTTCT CTAGCTTCGTCTTCGTTTTATCTTTCTAACAAACCCGATTATACTATCCT CACTAACACGGTTGTACCCAGACAACGTATTGCCCTTAGGTACCCTAACT TATGAGACAGAGGAAGTATGGATATTCGGTTGGTACGGTTGAGCGCGTTT TGGTGAGTAGTTGCATGCCTCTCCGCATGTGGCACAAGAAGGCGCATGGG GGGGGGTTACCATTCATGATTGAGTAATTCTTGAATCTTTCACCACCTAG TTCATCCGCTAACCTTAATGCCAAAAAAAGGTAATACCTGGTGAATACAC ACTACAAGCAGATATAAACATTTTTTTGCCACCTTTGTCTTGGTGCTCAC ACAAGCCTATTTGAAGCGCTTTGAAGATGGTGTAATAAATTGCCCCCTCC CTTTCTATCCCGTCCTCCTTTTGGTCCATGCGATTCCGTTTGTTTTTTTT TCTCGTCTCCAAACCTGTATTTTTGTACAGGTGGAAGTATTGGTGTGCAC CAACGAGAAGCGGACGAAGCAGTGGGAAGGATACACGGGCTGGCTGGAGC GGCACGCGCGGGAGCGGTACAATGTGATCATTGATGGGGCTAACGTAGGG TATTACAAGAAGGGTGCTGCCGACACGGGAGAGCTGGCCGACCTGAAGCA GGTGGACTGGGCAGTGAAGAAATTTGAGGCGGAGGTGAGCTGGGTGGGGG GGGGGGGGGAGGGGACGCTTAGGGGGGGGGGGGTATCTGTTCGCCTGATT CAGTCGATTGTGAAAGTACGTGGAATCCAAGGCCCTAGGGGGGAAAGCGC GAAAATTAATCGAGCAAGATGAAGGGAAAATGTCTTGTGTGGGTAAAGGC CAAAACAGGGTAAAAATACAAGGAAAAGAAATGAACAGAATATCCCTTTT GGTGCTTTATTGATATATATATATATATGATGTGTATTAAAGAGGAAGAT GTAAACAACAGCCATCGAATCACGTGTTTTCGCGGTTTTATGTGAAAGAC GGACAACGGAGTCGTTGTTTGAGGGTGTGTTATACAGTAATGTGTCAACC TCTACACGCGCCGTGTGTAGGCGGTCATGCAATAAATGACGAGTCAATCG TCACTCATTTCACCTCTTTACAACATCCTTGCTTTCGGTCGAGAGGCGCT CCGGGGCAATGTACCGGCTGTGCAGTAGAATTTGTGGTCAGCTGTTCAAC CTCATCATGGGCACGATGGAGTTATTTGATGAGCGCTTCAATTCTGCGTC TGGCGCATGGGTTGATTTATGAAAAAAGCTTGCCGTTTACCCCCCCCCCC CCATCTGTCCTCCCAAGGACTTTTGGTCAATATTCCAACAACTGTGATGT GCAAAACAACTAAAGTATCCCTCCTCGCCTCCCCTGTGTGTGTGTCTGCC CCGCTTTCGTGATTGACTTGTGCTTTGGGAATTGCCTGTTACAGGGCAAG AAACCCCTTGTAGTGCTGCACAGTCGACACCTTGCCCCGGAACGCCTCTC GACCGAAAGCAAAGAGATTGTGAACAGGTGAGATGCGTGACCTATCACTC ATCGACTGATATCGATAGAGAATGGTGGAAACCTCGTAGTAGGGAGAAAT AGTATACACACATCGCATACAGGCGTTGACCACAACTTACCATGCGTGAA ATTTCGTTGTCTCTCATATACTCTCATGCACCCCCTTACCCTTCTCTTGA TACATGACCCCCCCGGTCTTGACTACCAAGACCCTTGTTCTCTTCACTGT TTTGAAGTAAACTTTTACAAATCGTTGGAACTATTCATGGATATCTGTTC GTCGGTATGATACATAGTCACACTGACTCATGTACTATCATTTTGTGTCA TGTTTGACGACTCCGGACTAGGGGCTATATGTAACGAGGTATACAATAAA TCAAGTGTTAATTACGTGCGGTCCTTCCTGTTATCGGTGCTCGTGTGGTT GGTGTGCCCTTGGAAGGTGGAGGGAGGACAAGACTCTCCAGTCGTGTGCC CCCAACAACAACGATGACTGGTACTGGCTATACGCGGCAGTCCTCATCGG CGGTAGGGTGTTGGTTTTGACCAATGACGAGATGCGCGATCATCACTTCT CTATGCTGTCCCATCGCTCTTTTGAGAGATGGAAGGAGCGCCATCAGGTA TGCAAGTACATAGACTGCAATTGTGTTTTTACCCTGTAATGCTAAACACC GTCAGGTGAGGTGGTCAACTGTTTCAGACAGATTTTCTAATCTATACTTG AAAACGAGTCTCAAAAGAGAAGCTTCGCAGACGTTCTCCCCACATTTTTT CGCGAGCGCAAGCCTTACGGGTGGGTCAAGTACGCAATGATCCGCCTCCA TTTCGTCGTTCTCGGCCCTGTCCCAACCTCTGCGGGACAGCCCCACGTTT GTAGCAATTGAAATGTTGTGCAGCATGTAACTGCATATAAAGCTGGTTAC TCTTTATGTCACCTACATGCAGGTCATGTGTGGGTTGTCGGTAATTTACT AAAAAAAAGGATCACGTTTTTTCATGTAACCGGACAGACTCGATTCACGT TCGGAGACTGGAGGGAAGACATGCGAGAGGTACTGGCGGATGAGCCGCGT GCCTATTCCAAGCGCACTCAGATGGGCAACGAGGGTAAATCATGGCACTT TCCGCTGGAAGGTTCCAATGACTGGCTTTGTGCCAATCGCCAATAAGAAT CACGTCATCACAATTACGTCACCTCGTTTCGTTGTTTTTACTGATCAGTC CTGTTGTTCTCGGAGGGGGGGAAGTTAAGTTATGCAGTTGTATAAACTTA GCAGCAAAATTAAGTCAGTAAGGGGGAGGTTTCCAGGGGGTGTTGGCATC GTAGTGTCTTCAGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTC GCGATATCTGTGTTTGTACTAGATACACGTCCTAGGGGTTTTTGTGGCTT TAGTTGAGTGTGGAATTGCCCGGGTCTATTGCGTTGTCGTTGTCGTTGTC GTGTGAGAACTTGCGTCAGCATCCTCAGAGGCGAAACACGTTTATATATA TATAGAGAGAGATGTACTTATATATAGTTTGGTGGAAACAAATGGAATTC TCACACGGTGGCTGAGCGAAATGTTGTTGACTACGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6841:3740..11676+

>mRNA_H-paniculata_contig6841.14767.1 ID=mRNA_H-paniculata_contig6841.14767.1|Name=mRNA_H-paniculata_contig6841.14767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4590bp|location=Sequence derived from alignment at H-paniculata_contig6841:3740..11676+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCAGAGCTGAAGCGCAAACGTGAAGAACCGGACACGCCACAGAA
ACGGCGAGAAGAAGAAACGACCGAACCAGCTGGGGACAATGGCCTGCCTT
ATTTGACGCACCCTCTCCCTGGAGAGGCGGCACCCGCCCCTATCACTAAG
TCCAGCACCGCTGCTACACCAGCAACGGTGAGTAATGCGCCCCAAGCATC
GCCCGCTGGAGCTGGGTCTGGCCCTCGACTATCAGGCACCTCTGCAAAAA
CAGTGATAATATGCGGCAAGGAGGTGGCTTTGCAAGGCGGCGGGAAGAGG
CGAAAGCTACCCGTGGAGACCATGGTGTTGACGGCGTACAAGAAGGAGCT
GGCTCTAACGTGCAAGGCGAACGACATGGTGTCGGCTCTGGAGATGTACA
GTGAGATGAAGGCCAAGGGTATCAAGCAAGATCTCGGGATGTCATCAGAG
CTGAAGCGCAAACGTGAAGAACCGGACACGCCACAGAAACGGCGAGAAGA
AGAAACGACCGAACCAGCTGGGGACAATGGCCTGCCTTATTTGACGCACC
CTCTCCCTGGAGAGGCGGCACCCGCCCCTATCACTAAGTCCAGCACCGCT
GCTACACCAGCAACGGTGAGTAATGCGCCCCAAGCATCGCCCGCTGGAGC
TGGGTCTGGCCCTCGACTATCAGGCACCTCTGCAAAAACAGTGATAATAT
GCGGCAAGGAGGTGGCTTTGCAAGGCGGCGGGAAGAGGCGAAAGCTACCC
GTGGAGACCATGGTGTTGACGGCGTACAAGAAGGAGCTGGCTCTAACGTG
CAAGGCGAACGACATGGTGTCGGCTCTGGAGATGTACAGTGAGATGAAGG
CCAAGGGTATCAAGCAAGATCTCGGGATCCATCAGATGGTCCTGGCGGTG
TGCGGAGGCTCCCCTGGCGAAAAGGATACCCTCGACCCCGGCAACGGGGC
CACCCCGAGCGCTAACGCCGCCGCTAATAGTAGCAGTAGCAGCGCCAACA
ACCGCGTCGCCAGCTCCGCGTCTAGTGCGGTCGGGTCGCCAGGGACGGTA
GCCGGATCTGCGCAACAGAACACGGCGATGGCTGCGGACGCGGCAATCCA
GATCCATCAGATGGTCCTGGCGGTGTGCGGAGGCTCCCCTGGCGAAAAGG
ATACCCTCGACCCCGGCAACGGGGCCACCCCGAGCGCTAACGCCGCCGCT
AATAGTAGCAGTAGCAGCGCCAACAACCGCGTCGCCAGCTCCGCGTCTAG
TGCGGTCGGGTCGCCAGGGACGGTAGCCGGATCTGCGCAACAGAACACGG
CGATGGCTGCGGACGCGGCAATCCAGATTTTGGAGGATGTTACGAAAGAC
CCAGAAGGCAACGATAATTATCTGCCCGAATCGGCCTACACGGGCGTGAT
TCGCGCGTGTTGCCTGGATGGGCGGGCGGATAAGGGCAGGGAAGTGCTGG
AACGTCTCAAGCGAACACGGACACGGCCGCGCTTGAGATTTTGGAGGATG
TTACGAAAGACCCAGAAGGCAACGATAATTATCTGCCCGAATCGGCCTAC
ACGGGCGTGATTCGCGCGTGTTGCCTGGATGGGCGGGCGGATAAGGGCAG
GGAAGTGCTGGAACGTCTCAAGCGAACACGGACACGGCCGCGCTTGAGGA
CGTATGCGCCGTTACTGGAGGTATACGCAAGGCTAGAGGGAAGGCTGCAA
GACTGCATGGCGGTGTGGCGAGAGGCCGTATCTCGTGAGCAACAGTTAAC
CATGACTGAGCGGGAGTACTTGAGCCTTATCAAGGCATGCACCCGGGCTA
AGGATGAGAGTTGGACGTATGCGCCGTTACTGGAGGTATACGCAAGGCTA
GAGGGAAGGCTGCAAGACTGCATGGCGGTGTGGCGAGAGGCCGTATCTCG
TGAGCAACAGTTAACCATGACTGAGCGGGAGTACTTGAGCCTTATCAAGG
CATGCACCCGGGCTAAGGATGAGAGTTGCTTCGCAGAGGTGATGAGCGAG
TACATGGAGGATGTGCTACAACCGCGCAGCCGAGCAAGTTGGGACGTGCT
TAAGGCGTGGTTTAGGGTAGCTCCTAGTGAATCTAGTGCTGGTGTTGACA
CGGAGGACGGCGAGCGAGGGAGGCCGCCGAATGGGATATGCTCGGTCGGT
TCAGCGAGAGAGGGTCCCAAGAATGGTGCAGGTAGAGAGGAGGTATCGAC
GGCTGTAACACCCATTGTTGAGACCAAAGAAGAGTTTGTTGCATCACCCA
GGCGAGACGAGGCAGGAAACGAGGGAATAGCAGAGGGAGAGAAGGCCGGA
ACAGCAGAGGAAGAGGGAGGGGAAGCAGCAGGCAAACACCAAGCTCCGGA
CCGGGATAATCCGGTCGAGTCGGCCGCGAGCATCGTTGCTGCTCCTTCCG
CCGATGTACCCATTGCCCCTGCTGCAGCTGGTACGGAGGAGAATGGTAAT
GGTTGCAGTGTTGCAGTTGTTGCTGTTGTCACAACAGCGATGGATCGTGT
AGAGTGTGGGGCAGGAGAGGCGGTCACGAGTGCGTATGGGAAAGGATGGA
AGGTATCAGAGTGCAAGGTCGCGCCGGATGGGTCGTGTCAGAGCTGCGGA
GAAATACTGACATCGATAGAGCTCTCGGCAGATGAGGAGCAACGACTGCT
GAAACAGCTTCGCAGAGGTGATGAGCGAGTACATGGAGGATGTGCTACAA
CCGCGCAGCCGAGCAAGTTGGGACGTGCTTAAGGCGTGGTTTAGGGTAGC
TCCTAGTGAATCTAGTGCTGGTGTTGACACGGAGGACGGCGAGCGAGGGA
GGCCGCCGAATGGGATATGCTCGGTCGGTTCAGCGAGAGAGGGTCCCAAG
AATGGTGCAGGTAGAGAGGAGGTATCGACGGCTGTAACACCCATTGTTGA
GACCAAAGAAGAGTTTGTTGCATCACCCAGGCGAGACGAGGCAGGAAACG
AGGGAATAGCAGAGGGAGAGAAGGCCGGAACAGCAGAGGAAGAGGGAGGG
GAAGCAGCAGGCAAACACCAAGCTCCGGACCGGGATAATCCGGTCGAGTC
GGCCGCGAGCATCGTTGCTGCTCCTTCCGCCGATGTACCCATTGCCCCTG
CTGCAGCTGGTACGGAGGAGAATGGTAATGGTTGCAGTGTTGCAGTTGTT
GCTGTTGTCACAACAGCGATGGATCGTGTAGAGTGTGGGGCAGGAGAGGC
GGTCACGAGTGCGTATGGGAAAGGATGGAAGGTATCAGAGTGCAAGGTCG
CGCCGGATGGGTCGTGTCAGAGCTGCGGAGAAATACTGACATCGATAGAG
CTCTCGGCAGATGAGGAGCAACGACTGCTGAAACAGGTGGAAGTATTGGT
GTGCACCAACGAGAAGCGGACGAAGCAGTGGGAAGGATACACGGGCTGGC
TGGAGCGGCACGCGCGGGAGCGGTACAATGTGATCATTGATGGGGCTAAC
GTAGGGTATTACAAGAAGGGTGCTGCCGACACGGGAGAGCTGGCCGACCT
GAAGCAGGTGGACTGGGCAGTGAAGAAATTTGAGGCGGAGGTGGAAGTAT
TGGTGTGCACCAACGAGAAGCGGACGAAGCAGTGGGAAGGATACACGGGC
TGGCTGGAGCGGCACGCGCGGGAGCGGTACAATGTGATCATTGATGGGGC
TAACGTAGGGTATTACAAGAAGGGTGCTGCCGACACGGGAGAGCTGGCCG
ACCTGAAGCAGGTGGACTGGGCAGTGAAGAAATTTGAGGCGGAGGGCAAG
AAACCCCTTGTAGTGCTGCACAGTCGACACCTTGCCCCGGAACGCCTCTC
GACCGAAAGCAAAGAGATTGTGAACAGGGCAAGAAACCCCTTGTAGTGCT
GCACAGTCGACACCTTGCCCCGGAACGCCTCTCGACCGAAAGCAAAGAGA
TTGTGAACAGGTGGAGGGAGGACAAGACTCTCCAGTCGTGTGCCCCCAAC
AACAACGATGACTGGTACTGGCTATACGCGGCAGTCCTCATCGGCGGTAG
GGTGTTGGTTTTGACCAATGACGAGATGCGCGATCATCACTTCTCTATGC
TGTCCCATCGCTCTTTTGAGAGATGGAAGGAGCGCCATCAGGTGGAGGGA
GGACAAGACTCTCCAGTCGTGTGCCCCCAACAACAACGATGACTGGTACT
GGCTATACGCGGCAGTCCTCATCGGCGGTAGGGTGTTGGTTTTGACCAAT
GACGAGATGCGCGATCATCACTTCTCTATGCTGTCCCATCGCTCTTTTGA
GAGATGGAAGGAGCGCCATCAGACTCGATTCACGTTCGGAGACTGGAGGG
AAGACATGCGAGAGGTACTGGCGGATGAGCCGCGTGCCTATTCCAAGCGC
ACTCAGATGGGCAACGAGGGTAAATCATGGCACTTTCCGCTGGAAGGTTC
CAATGACTGGCTTTGTGCCAATCGCCAATAAACTCGATTCACGTTCGGAG
ACTGGAGGGAAGACATGCGAGAGGTACTGGCGGATGAGCCGCGTGCCTAT
TCCAAGCGCACTCAGATGGGCAACGAGGGTAAATCATGGCACTTTCCGCT
GGAAGGTTCCAATGACTGGCTTTGTGCCAATCGCCAATAA
back to top