mRNA_H-paniculata_contig683.14748.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig683.14748.1
Unique NamemRNA_H-paniculata_contig683.14748.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: A0A7S3XZ48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ48_HETAK)

HSP 1 Score: 156 bits (394), Expect = 3.820e-47
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 1
Query:    1 VEDVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGANATVRNRSGL 303
            +EDVFSYARHNRV+D+ERLLD G+P ++RD +GNT++ VACQNGHKR  KAALRRGAD+N  N RGNT LH+CF +GYG+TLG+YL+ KGA+ T+RN  G+
Sbjct:   16 LEDVFSYARHNRVDDLERLLDAGMPVNIRDQYGNTVLCVACQNGHKRAAKAALRRGADINARNYRGNTPLHFCFTYGYGETLGQYLISKGADPTIRNNDGV 116          
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: A0A7S2MBB0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MBB0_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.600e-43
Identity = 65/101 (64.36%), Postives = 85/101 (84.16%), Query Frame = 1
Query:    1 VEDVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGANATVRNRSGL 303
            VED+FSYARHNR ED+ERLLDQG+P ++RD  GNTI+ ++CQNG+KRV KAALRRGA++N  N RGNT LH+C+ +GYG TLG+YL+ KG + ++ NR+GL
Sbjct:  120 VEDIFSYARHNRFEDIERLLDQGIPVNIRDKTGNTILAISCQNGNKRVAKAALRRGANINAQNYRGNTPLHFCYTYGYGDTLGQYLISKGGDTSILNRAGL 220          
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: A0A7S3HME0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HME0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.940e-41
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 1
Query:    1 VEDVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGANATVRNRSGLVSVVEQG 324
            VEDVFSYARH R E++ERL  +G+P DVR+ HGNT++IVACQNG+KRV KA LRRGA++N  N RGNT LHYC+ +GYG +LG+YL+ KGA+A  RN +G    V+QG
Sbjct:  173 VEDVFSYARHGRCEEIERLFAKGLPVDVRNDHGNTVLIVACQNGNKRVAKAVLRRGANINARNLRGNTPLHYCYHYGYGDSLGQYLISKGADADARNNAG--KSVDQG 278          
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: A0A5A8E191_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E191_CAFRO)

HSP 1 Score: 143 bits (361), Expect = 6.250e-40
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 VEDVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGANATVRNRSGLV 306
            V+DVFS ARHNRV D+  LLD+GVP D+ DAHGNTI+IVACQNG KRV K ALRRG D++  N+RGNTALH+C+A+GYG+ LG YL+ KGA+   RN +G +
Sbjct:  198 VKDVFSLARHNRVADLTALLDRGVPVDIADAHGNTILIVACQNGLKRVAKLALRRGCDIDARNSRGNTALHFCYAYGYGEGLGAYLVSKGADPAARNDAGFL 299          
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: A0A7S1C915_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C915_9STRA)

HSP 1 Score: 138 bits (347), Expect = 8.600e-40
Identity = 62/101 (61.39%), Postives = 80/101 (79.21%), Query Frame = 1
Query:    1 VEDVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGANATVRNRSGL 303
            V DVFS ARHNR ++VE LLD+GVP ++RD HGNTI+ +ACQNG K++ K ALR GAD+N  N +GNT LHYCF +G+G TLG+Y++ KGA+ T+RN  GL
Sbjct:   27 VADVFSLARHNRCKEVEALLDRGVPVNLRDKHGNTILTIACQNGLKKMAKVALRAGADINTRNYKGNTPLHYCFTYGWGDTLGQYMLSKGADGTLRNDLGL 127          
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: A0A7S1TRF9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRF9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.270e-39
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = 1
Query:    1 VEDVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGA 273
            VED+FSYARHNRVED+E +LD+GVP +VRD +GNT++IV+CQNGHKR  K ALR+GAD+N  N +GN+ALH+C  +GYG TLG+YL+ KGA
Sbjct:  143 VEDIFSYARHNRVEDMEAVLDRGVPVNVRDQYGNTLLIVSCQNGHKRAAKMALRKGADINARNYKGNSALHFCHTYGYGDTLGQYLISKGA 233          
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: F0XZK4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZK4_AURAN)

HSP 1 Score: 134 bits (338), Expect = 5.820e-39
Identity = 61/97 (62.89%), Postives = 82/97 (84.54%), Query Frame = 1
Query:    1 VEDVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGANATVRN 291
            V+++FS+ARHNRV+DVERLL +GVP +VRD +GNT+ +VA QNGHKR++K ALRRGAD+N  N RGNTALH+CF+FG+ + LG Y++ KGA+  +RN
Sbjct:    2 VDNIFSFARHNRVDDVERLLLRGVPPNVRDVYGNTVTLVAAQNGHKRIVKGALRRGADINAANYRGNTALHFCFSFGFDK-LGDYMISKGADPGIRN 97          
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: D8LT35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT35_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 7.120e-39
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 1
Query:    1 VEDVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFG 231
            VEDVFSYARHNRV D+ER++DQGVPADVRD+HGNTI+IVACQNGHKR LKAALR GAD + +NARGNTALHYC+AFG
Sbjct:  173 VEDVFSYARHNRVLDLERMMDQGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFG 249          
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: A0A2D4BHZ8_PYTIN (Proteasome subunit alpha, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ8_PYTIN)

HSP 1 Score: 142 bits (358), Expect = 2.140e-38
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:    7 DVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGANATVRNRSGLV 306
            DVFS ARHNRV+ V  +LDQGV  + RDAHGNTI+ +ACQNG KR+ K ALRRGA++N  N RGNTALH+CFA+GYG TLG+YL+ KGA+AT+ N +GL+
Sbjct:  318 DVFSAARHNRVDSVAYMLDQGVSVNARDAHGNTILSIACQNGLKRMAKLALRRGANINSQNNRGNTALHFCFAYGYGDTLGEYLLSKGADATIANDAGLL 417          
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Match: A0A485KLK5_9STRA (Aste57867_8880 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLK5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.400e-37
Identity = 58/99 (58.59%), Postives = 80/99 (80.81%), Query Frame = 1
Query:    7 DVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLKAALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGANATVRNRSGL 303
            DVFS ARHNRV+DV  +LD G+P +++DA+GN+++++ACQNG KR+ K  LRRGA++N  N RGNT LH+C+A+GYG+TLG YL+ KGA+ T+RN   L
Sbjct:  141 DVFSLARHNRVDDVRDMLDSGLPVNIQDAYGNSLLLIACQNGLKRLAKELLRRGANINAQNTRGNTPLHFCYAYGYGETLGAYLISKGADVTIRNGQDL 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig683.14748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XZ48_HETAK3.820e-4767.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2MBB0_9STRA1.600e-4364.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3HME0_9STRA2.940e-4162.96Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5A8E191_CAFRO6.250e-4064.71Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S1C915_9STRA8.600e-4061.39Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1TRF9_9STRA2.270e-3967.03Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0XZK4_AURAN5.820e-3962.89Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
D8LT35_ECTSI7.120e-3983.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BHZ8_PYTIN2.140e-3866.00Proteasome subunit alpha, putative n=1 Tax=Pythium... [more]
A0A485KLK5_9STRA2.400e-3758.59Aste57867_8880 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig683contigH-paniculata_contig683:2183..3387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue8.4e-30
Seed eggNOG ortholog44056.XP_009033564.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acyl-coa-binding protein
EggNOG OGsCOG4281@1,KOG0817@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_004000.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size333
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig683.14748.1prot_H-paniculata_contig683.14748.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig683 2183..3387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930815.024729-CDS-H-paniculata_contig683:2182..22471622930815.024729-CDS-H-paniculata_contig683:2182..2247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig683 2183..2247 +
1691481464.844705-CDS-H-paniculata_contig683:2182..22471691481464.844705-CDS-H-paniculata_contig683:2182..2247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig683 2183..2247 +
1622930815.044011-CDS-H-paniculata_contig683:2765..29291622930815.044011-CDS-H-paniculata_contig683:2765..2929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig683 2766..2929 +
1691481464.8557172-CDS-H-paniculata_contig683:2765..29291691481464.8557172-CDS-H-paniculata_contig683:2765..2929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig683 2766..2929 +
1622930815.0573268-CDS-H-paniculata_contig683:3283..33871622930815.0573268-CDS-H-paniculata_contig683:3283..3387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig683 3284..3387 +
1691481464.8658724-CDS-H-paniculata_contig683:3283..33871691481464.8658724-CDS-H-paniculata_contig683:3283..3387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig683 3284..3387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig683.14748.1

>prot_H-paniculata_contig683.14748.1 ID=prot_H-paniculata_contig683.14748.1|Name=mRNA_H-paniculata_contig683.14748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
VEDVFSYARHNRVEDVERLLDQGVPADVRDAHGNTIIIVACQNGHKRVLK
AALRRGADVNVTNARGNTALHYCFAFGYGQTLGKYLMDKGANATVRNRSG
LVSVVEQGEI*
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mRNA from alignment at H-paniculata_contig683:2183..3387+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig683.14748.1 ID=mRNA_H-paniculata_contig683.14748.1|Name=mRNA_H-paniculata_contig683.14748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1205bp|location=Sequence derived from alignment at H-paniculata_contig683:2183..3387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAGGATGTGTTCAGCTACGCGAGACACAATCGAGTCGAAGATGTGGA ACGCTTGCTGGATCAGTGAGTGCTGCCAGATTATACAGAATTTCGAACAC AAATCTTGCTTCTCGCAGCTCTCTATTCCATACGCACTCCAGCTGTTCCC AGTCGAACAACGGATTCTGCTATCCGAACCAGCGTAGGCCTCACAATACA GTCATTAACGTGGGATAAGTATTTCGAGCAGACCCGAAGCCGATATAGCA CGCGACCTATTTTAAATGGTACACAATAAGCATACCGAGTTCCTTCTAAT AAAATCCTTGAAGTTGGCAGCTTGTACGTTTTACGGTGGTTTCTCCACCG TTAGTACCAATCAATGCCACGTGAACGACTTCATTCGTCTTGTGCGCAAA CACACGACACACCTAATGTAACTGTATTCCAATCAGTTCCAAGCAGGTTG TCGCAAGTGAGTCTCAGTGACCCGAGGGACTAAACAACGGCGATTCCATC ACATGTGACTCTTCTGCTAGATTAAAACGCCCATAGATAAACACCAGGTG TCACACTTTTCCGACTTCGACTTCCTTTGGCAGAGGAGTGCCTGCGGACG TCAGGGATGCGCACGGTAACACAATCATTATCGTCGCGTGCCAGAACGGA CACAAGAGAGTACTCAAGGCTGCCTTGCGACGAGGCGCTGATGTGAATGT CACCAACGCACGCGGAAATACTGCGCTTCACTACTGTTTTGCCTTTGGTG AGCAGGTTACTTATTTCCTCCATGCACGCGTGTTTAATAGGTGTGGGTGA GGAGAGGATTGTTTTAGGCATGGCGAGTACTGATGCTACCAACGTACTGG GCGCAGACGTACACTACACGCTCAATTACAGTAATTGAAAAGAATAACGC GATGTGTACTCGCGTTTTCTTTCGGGAAGGTGGGAACTGGGTCCCTTGCA CTCATTAGCACAATCTCATTCTCCGACCCTGACCCCACCGATAAACGTAC CCTTTCACCATGGACATGTATTCGATGGTAATCTCCACCTCCATGTCTCT TCAGCGATACATTTCATGTACCTACACTTGTCTCATTGCGACTTACTGCA GGGTACGGTCAGACCCTCGGAAAGTACCTGATGGACAAGGGGGCAAACGC GACGGTTAGAAACCGCAGTGGTTTGGTGAGCGTGGTCGAACAGGGCGAAA TATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig683:2183..3387+

>mRNA_H-paniculata_contig683.14748.1 ID=mRNA_H-paniculata_contig683.14748.1|Name=mRNA_H-paniculata_contig683.14748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig683:2183..3387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAGGATGTGTTCAGCTACGCGAGACACAATCGAGTCGAAGATGTGGA
ACGCTTGCTGGATCAGTGGAGGATGTGTTCAGCTACGCGAGACACAATCG
AGTCGAAGATGTGGAACGCTTGCTGGATCAAGGAGTGCCTGCGGACGTCA
GGGATGCGCACGGTAACACAATCATTATCGTCGCGTGCCAGAACGGACAC
AAGAGAGTACTCAAGGCTGCCTTGCGACGAGGCGCTGATGTGAATGTCAC
CAACGCACGCGGAAATACTGCGCTTCACTACTGTTTTGCCTTTGAGGAGT
GCCTGCGGACGTCAGGGATGCGCACGGTAACACAATCATTATCGTCGCGT
GCCAGAACGGACACAAGAGAGTACTCAAGGCTGCCTTGCGACGAGGCGCT
GATGTGAATGTCACCAACGCACGCGGAAATACTGCGCTTCACTACTGTTT
TGCCTTTGGGTACGGTCAGACCCTCGGAAAGTACCTGATGGACAAGGGGG
CAAACGCGACGGTTAGAAACCGCAGTGGTTTGGTGAGCGTGGTCGAACAG
GGCGAAATATGAGGTACGGTCAGACCCTCGGAAAGTACCTGATGGACAAG
GGGGCAAACGCGACGGTTAGAAACCGCAGTGGTTTGGTGAGCGTGGTCGA
ACAGGGCGAAATATGA
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