mRNA_H-paniculata_contig6803.14722.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6803.14722.1
Unique NamemRNA_H-paniculata_contig6803.14722.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 4.710e-78
Identity = 144/277 (51.99%), Postives = 176/277 (63.54%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFGKNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGTGNFPIQTRSVVTVSVVR-E*PWPLGCSFRLEF-RKSF*NVEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQKR--WYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWVWKDNVMNGTMDALK-VPNDRDFSAGEYKDAVEGDGVMLQEYLDIAAECSEFM 892
            MT  MFMEWL+  L PAF+A +G NKKMILVLDNASYHHGYD EVGVPE+++K  N  LLR Y+   + V+       G +++K    Y FQ+  TG FP Q  S     V   E        F+L+   K    VE FM+ R W+LIWTPPYM SFQPIELFWQHGKQY+SFNFK+   MA+V  Q R  WYGD T EGQ G WK  DCSKLV+HA+K+MN+WV  D V+ G M AL+ +P   +  A  + D V  DGV  QE L+++AE  E M
Sbjct:  372 MTDKMFMEWLERRLAPAFKAKYG-NKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTSSAGVRSKK----YTFQVPATGTFP-QANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPTWEGQKGGWKPADCSKLVAHAVKEMNKWVASDPVLRGQMGALEEIPESYEDDAPGHNDIVHDDGVEAQEQLELSAEFMECM 642          
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.750e-62
Identity = 127/271 (46.86%), Postives = 161/271 (59.41%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFG-KNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGT--GNFPIQTR----SVVTVSVVRE*PWPLGCSFRLEFRKSF*NVEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQ--KRWYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWVW-KDNVMNGTMDALKVPNDRDFS-AGEYKDAVEGDGVMLQE 856
            MT  MFMEWL++ L PA+ A    K K+MILVLDNASYHHG+D EV VPET+TK  N+ LLR + A S++V       + ++  +GVV YN ++      +FP   R    S   V+        L    RLE R     V  FM  + W LIWTPPYM SFQPIELFWQHGKQY+S NF+    M +V  Q  K WYGD+   GQ G WKA DCSKLV HAI +MN+WV  +D V++GT+ +L+ P+  D        D  EG G  +Q+
Sbjct:  267 MTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRV-------RRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEER-----VVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQ 525          
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 3.290e-62
Identity = 128/271 (47.23%), Postives = 162/271 (59.78%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFG-KNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGT--GNFPIQTR----SVVTVSVVRE*PWPLGCSFRLEFRKSF*NVEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQ--KRWYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWVW-KDNVMNGTMDALKVPNDRDFS-AGEYKDAVEGDGVMLQE 856
            MT  MFMEWL++ L PA+ A    K K+MILVLDNASYHHG+D EV VPET+TK  N+ LLR + A S++V       + ++  +GVV YNF++      +FP   R    S   V+        L    RLE R     V  FM  + W LIWTPPYM SFQPIELFWQHGKQY+S NF+    M +V  Q  K WYGD+   GQ G WKA DCSKLV HAI +MN+WV  +D V++GT+ +L+ P+  D        D  EG G  +Q+
Sbjct:  368 MTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRV-------RRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEER-----VVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVPPVGDVEEGVGEQIQQ 626          
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.280e-61
Identity = 122/269 (45.35%), Postives = 158/269 (58.74%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFG-KNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGTGNFPIQTR----SVVTVSVVRE*PWPLGCSFRLEFRKSF*NVEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQ--KRWYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWVW-KDNVMNGTMDALKVPNDRDFS-AGEYKDAVEGDGVMLQE 856
            MT  MFMEWL++ L PA+ A    K K+MILVLDNASYHHG+D +V +PE++TK  N+ LLR + A S++V       K ++  +GV ++        +FP   R    S   V+        L    RLE R     V  FM  + W LIWTPPYM SFQPIELFWQHGKQY+S NF+    M +V  Q  K WYGD+   GQ G WKA DCSKLV HAI +MN+WV  +D V++GT+ +L+ P+  D        D  EG G  +Q+
Sbjct:   98 MTDSMFMEWLEHRLNPAYNAIPEFKGKRMILVLDNASYHHGFDAQVKLPESNTKKHNVDLLRMFGAKSIRV-------KRKEGEQGVYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEER-----VVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQ 354          
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.910e-61
Identity = 127/271 (46.86%), Postives = 161/271 (59.41%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFG-KNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGT--GNFPIQTR----SVVTVSVVRE*PWPLGCSFRLEFRKSF*NVEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQ--KRWYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWVW-KDNVMNGTMDALKVPNDRDFS-AGEYKDAVEGDGVMLQE 856
            MT  MFMEWL++ L PA+ A    K K+MILVLDNASYHHG+  EV VPET+TK  N+ LLR + A S++V       + ++  +GVV YNF++      +FP   R    S   V+        L    RLE R     V  FM  + W LIWTPPYM SFQPIELFWQHGKQY+S NF+    M +V  Q  K WYGD+   GQ G WKA DCSKLV HAI +MN+WV  +D V++GT+ +L+ P+  D        D  EG G  +Q+
Sbjct:  378 MTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFVSEVKVPETNTKKHNVDLLRMFGAKSIRV-------RRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEER-----VVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQ 636          
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 3.970e-61
Identity = 118/265 (44.53%), Postives = 157/265 (59.25%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFGKNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGTGNFPIQTRSVVTVSVVRE*PWPLGCSFRLEFRKSF*N-----VEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQKR--WYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWV--WKDNVMNGTMDALKVPNDRDFSAGEYKDAVEGDGV 844
            MT GMFM+WLK+ L PAF+A F KNKKM LVLDNASYHH +D+EV VPET++K  N++LLR Y   S +V         R++      YNF++   G+ P   R      V +E    +    R  F+K+F        E +M ++ W LIWTPPYM +FQPIELFWQHGK Y+S +F+   NM  V +Q R  WYGD   +GQ G WKA DC KLV H I  M+EW+  +  N ++GT+ +L+ P        EY++A   D +
Sbjct:  217 MTDGMFMQWLKHRLTPAFDAQF-KNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVT--------RESEGKAAEYNFEVPAQGSLPNANRKN---GVSKE---EIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPEWDGQEGGWKAADCGKLVQHTIGKMDEWIGLYGGN-LSGTIGSLEYP------VAEYQEATAEDEI 459          
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 5.040e-60
Identity = 117/265 (44.15%), Postives = 158/265 (59.62%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFGKNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGTGNFPIQTRSVVTVSVVRE*PWPLGCSFRLEFRKSF*N-----VEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQKR--WYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWV--WKDNVMNGTMDALKVPNDRDFSAGEYKDAVEGDGV 844
            MT GMFM+WLK+ L PAF+A F KNKKM LVLDNASYHH +D+EV VPET++K  N++LLR Y   S +V         R++      YNF++   G+ P   R      V +E    +    R  F+K+F        E +M ++ W LIWTPPYM +FQPIELFWQHGK Y+S +F+   N+  V +Q R  WYGD   +GQ G WKA +C KLV HAI  M+EW+  +  N ++GT+ +L+ P        EY++A   D +
Sbjct:  255 MTDGMFMQWLKHRLTPAFDAQF-KNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVT--------RESEGKAAEYNFEVPAQGSLPNANRKN---GVSKE---EIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNILDVWKQIRLGWYGDPEWDGQEGGWKAANCGKLVQHAIGKMDEWIGLYGGN-LSGTIGSLEYP------VAEYQEATAEDEI 497          
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: A0A6H5KL68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL68_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 9.510e-59
Identity = 116/265 (43.77%), Postives = 156/265 (58.87%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFGKNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGTGNFPIQTRSVVTVSVVRE*PWPLGCSFRLEFRKSF*N-----VEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQKR--WYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWV--WKDNVMNGTMDALKVPNDRDFSAGEYKDAVEGDGV 844
            MT GMFM+WLK+ L PAF+A F KNKKM LVLDNASYHH +D+EV VPET++K  N++LLR Y   S +V         R++      YNF++   G+ P   R      V +E    +    R  F+K+F        E +M ++ W LIWTPPYM +FQPIELFWQ GK Y+S +F+   N+  V +Q R  WYGD   +GQ G WKA  C KLV HAI  M+EW+  +  N ++GT+ +L+ P        EY++A   D +
Sbjct:  250 MTDGMFMQWLKHRLTPAFDAQF-KNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVT--------RESEGKAAEYNFEVPAQGSLPNANRKN---GVSKE---EIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQQGKHYVSIHFERGRNILDVWKQIRLGWYGDSEWDGQEGGWKAASCGKLVQHAIGKMDEWIGLYGGN-LSGTIGSLEYP------VAEYQEATAEDEI 492          
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 4.620e-58
Identity = 125/272 (45.96%), Postives = 160/272 (58.82%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFG-KNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGT--GNFPIQTR----SVVTVSVVRE*PWPLGCSFRLEFRKSF*NVEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQKR--WYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWVW-KDNVMNGTMDALKVPN--DRDFSAGEYKDAVEGDGVMLQE 856
            MT  MFMEWL++ L PA+ A    + KKMILVLDNASYHHG+D EV VPET+TK  N+ LLR + A S++V       K ++  +G V +NF++      +FP   R    S   V+        L    RLE R     V  FM  + W LIWTPPYM SFQPIELFWQHGKQY+S NF+    M +V  Q R  WYGD+   GQ G WKA +CSKLV HAI +MN+WV  +D  ++G +  L+ P+  D+D       D  EG G  +Q+
Sbjct:  402 MTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRV-------KRKEGEQGFVEHNFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEER-----VVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHAIGEMNKWVRDRDAGLSGKIGNLQKPDGYDKD-DVSPVGDVEEGVGEQIQQ 660          
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 7.440e-57
Identity = 112/230 (48.70%), Postives = 139/230 (60.43%), Query Frame = 2
Query:   77 MTGGMFMEWLKNFLPPAFEAAFG-KNKKMILVLDNASYHHGYDKEVGVPETDTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGT--GNFPIQTR----SVVTVSVVRE*PWPLGCSFRLEFRKSF*NVEVFMHDRAWELIWTPPYMRSFQPIELFWQHGKQYISFNFKSSLNMAQV*EQ--KRWYGDET*EGQLGDWKATDCSKLVSHAIKDMNEWV 739
            MT  MFMEWL++ L PA+ A    K K+MILVLDNASYHHG+D EV VPE++TK  N+ LLR + A S++V       + ++  +GVV YN ++      +FP   R    S   V+        L    RLE R     V  FM  + W LIWTPPYM SFQPIELFWQHGKQY+S  F+    M +V  Q  K WYGD+   GQ G WKA +CSKLV HAI +MN+WV
Sbjct:  251 MTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPESNTKKHNVDLLRMFGAKSIRV-------RRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEER-----VVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEGGWKAANCSKLVDHAIGEMNKWV 468          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6803.14722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI4.710e-7851.99Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5K024_9PHAE1.750e-6246.86DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE3.290e-6247.23DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KHE7_9PHAE1.280e-6145.35DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE2.910e-6146.86DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5LE74_9PHAE3.970e-6144.53Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE5.040e-6044.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL68_9PHAE9.510e-5943.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LNM6_ECTSI4.620e-5845.96DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE7.440e-5748.70DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6803contigH-paniculata_contig6803:2517..3539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1023
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6803.14722.1prot_H-paniculata_contig6803.14722.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6803 2593..2937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930811.814858-UTR-H-paniculata_contig6803:2516..25921622930811.814858-UTR-H-paniculata_contig6803:2516..2592Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6803 2517..2592 +
1691481463.4358048-UTR-H-paniculata_contig6803:2516..25921691481463.4358048-UTR-H-paniculata_contig6803:2516..2592Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6803 2517..2592 +
1622930811.8783479-UTR-H-paniculata_contig6803:2937..35391622930811.8783479-UTR-H-paniculata_contig6803:2937..3539Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6803 2938..3539 +
1691481463.4725614-UTR-H-paniculata_contig6803:2937..35391691481463.4725614-UTR-H-paniculata_contig6803:2937..3539Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6803 2938..3539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930811.8629007-CDS-H-paniculata_contig6803:2592..29371622930811.8629007-CDS-H-paniculata_contig6803:2592..2937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6803 2593..2937 +
1691481463.4554183-CDS-H-paniculata_contig6803:2592..29371691481463.4554183-CDS-H-paniculata_contig6803:2592..2937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6803 2593..2937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6803.14722.1

>prot_H-paniculata_contig6803.14722.1 ID=prot_H-paniculata_contig6803.14722.1|Name=mRNA_H-paniculata_contig6803.14722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MTGGMFMEWLKNFLPPAFEAAFGKNKKMILVLDNASYHHGYDKEVGVPET
DTKTKNIQLLRTYEAGSVQVKPVEKIGKGRKARKGVVSYNFQIAGTGNFP
IQTRSVVTVSVVRE*
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mRNA from alignment at H-paniculata_contig6803:2517..3539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6803.14722.1 ID=mRNA_H-paniculata_contig6803.14722.1|Name=mRNA_H-paniculata_contig6803.14722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-paniculata_contig6803:2517..3539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTGATACCATAGGAGATGCCCTAATGAAGTTATTAACCCCTGTGGCAC CCTAAGTTCCACAGAAAATTACCACAATGACTGGCGGCATGTTCATGGAG TGGCTCAAGAATTTCCTTCCGCCGGCTTTCGAAGCTGCTTTCGGCAAGAA CAAGAAGATGATCCTTGTTCTCGACAATGCATCATACCACCATGGGTATG ACAAGGAGGTCGGGGTTCCTGAAACCGATACCAAGACGAAAAACATACAA TTGTTGCGTACGTACGAGGCCGGATCAGTTCAGGTTAAGCCTGTGGAAAA GATCGGTAAGGGGCGGAAGGCGCGCAAGGGAGTTGTGAGTTACAATTTCC AAATAGCGGGGACTGGAAACTTTCCCATTCAAACTCGAAGTGTGGTAACG GTGTCAGTAGTGCGGGAGTAGCCCTGGCCACTCGGGTGTTCTTTCAGATT AGAATTCCGGAAAAGCTTCTGAAATGTTGAGGTGTTCATGCACGATCGAG CTTGGGAGTTGATCTGGACCCCACCTTACATGCGCTCTTTTCAGCCGATC GAGCTGTTCTGGCAGCACGGCAAGCAGTATATCAGTTTCAATTTCAAGTC TAGCCTTAATATGGCACAGGTTTGAGAGCAGAAGCGTTGGTATGGGGATG AGACATGAGAAGGGCAGTTGGGGGATTGGAAAGCGACTGACTGTAGCAAA CTCGTTTCGCATGCCATCAAGGACATGAACGAATGGGTTTGGAAAGACAA CGTAATGAACGGTACCATGGACGCCCTAAAGGTGCCTAACGATCGAGATT TCAGTGCTGGCGAGTACAAGGATGCCGTTGAGGGTGATGGGGTGATGCTC CAGGAGTACCTTGATATCGCTGCGGAATGTTCGGAGTTTATGGATATGGG TGAAACCACGAACAAGGGTGTGCTGGTTTAACAGAAAAAAATTGAGAGTC CAGTTCATGGAAATAGCAAGTTGTAACAATAGGTTTGGATAGCGTTGGGA TGGGTAGTGCTGGAGCTTGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6803:2517..3539+

>mRNA_H-paniculata_contig6803.14722.1 ID=mRNA_H-paniculata_contig6803.14722.1|Name=mRNA_H-paniculata_contig6803.14722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig6803:2517..3539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGGCGGCATGTTCATGGAGTGGCTCAAGAATTTCCTTCCGCCGGC
TTTCGAAGCTGCTTTCGGCAAGAACAAGAAGATGATCCTTGTTCTCGACA
ATGCATCATACCACCATGGGTATGACAAGGAGGTCGGGGTTCCTGAAACC
GATACCAAGACGAAAAACATACAATTGTTGCGTACGTACGAGGCCGGATC
AGTTCAGGTTAAGCCTGTGGAAAAGATCGGTAAGGGGCGGAAGGCGCGCA
AGGGAGTTGTGAGTTACAATTTCCAAATAGCGGGGACTGGAAACTTTCCC
ATTCAAACTCGAAGTGTGGTAACGGTGTCAGTAGTGCGGGAGTAGATGAC
TGGCGGCATGTTCATGGAGTGGCTCAAGAATTTCCTTCCGCCGGCTTTCG
AAGCTGCTTTCGGCAAGAACAAGAAGATGATCCTTGTTCTCGACAATGCA
TCATACCACCATGGGTATGACAAGGAGGTCGGGGTTCCTGAAACCGATAC
CAAGACGAAAAACATACAATTGTTGCGTACGTACGAGGCCGGATCAGTTC
AGGTTAAGCCTGTGGAAAAGATCGGTAAGGGGCGGAAGGCGCGCAAGGGA
GTTGTGAGTTACAATTTCCAAATAGCGGGGACTGGAAACTTTCCCATTCA
AACTCGAAGTGTGGTAACGGTGTCAGTAGTGCGGGAGTAG
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