mRNA_H-paniculata_contig67947.14711.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig67947.14711.1
Unique NamemRNA_H-paniculata_contig67947.14711.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig67947.14711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig67947contigH-paniculata_contig67947:6..320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.8389015-UTR-H-paniculata_contig67947:5..111622930809.8389015-UTR-H-paniculata_contig67947:5..11Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig67947 6..11 +
1691481462.4685783-UTR-H-paniculata_contig67947:5..111691481462.4685783-UTR-H-paniculata_contig67947:5..11Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig67947 6..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.852242-CDS-H-paniculata_contig67947:11..3201622930809.852242-CDS-H-paniculata_contig67947:11..320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig67947 12..320 +
1691481462.477776-CDS-H-paniculata_contig67947:11..3201691481462.477776-CDS-H-paniculata_contig67947:11..320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig67947 12..320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig67947.14711.1prot_H-paniculata_contig67947.14711.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig67947 12..320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig67947.14711.1

>prot_H-paniculata_contig67947.14711.1 ID=prot_H-paniculata_contig67947.14711.1|Name=mRNA_H-paniculata_contig67947.14711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MGSTAVSVRDDDEVVPAAQVRGDSEVAPACRQSSVDFFGKELSYKRIKDV
PLFSGKREDFHGWANEFLDLAAFNRIQNGFLDVIDVPVSGEGNSDSELRA
RGF
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mRNA from alignment at H-paniculata_contig67947:6..320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig67947.14711.1 ID=mRNA_H-paniculata_contig67947.14711.1|Name=mRNA_H-paniculata_contig67947.14711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig67947:6..320+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCCGATGGGTTCGACGGCCGTGTCTGTGAGGGACGACGATGAGGTTGT
TCCTGCGGCACAGGTGAGGGGTGACAGTGAGGTTGCTCCCGCTTGTAGGC
AATCGAGTGTTGATTTTTTTGGAAAAGAACTGTCATACAAACGAATAAAA
GATGTGCCTCTTTTCTCCGGGAAGCGAGAAGATTTCCACGGATGGGCTAA
TGAATTTTTGGATCTTGCAGCTTTTAACAGGATTCAAAATGGATTCCTCG
ATGTCATAGATGTTCCTGTTAGTGGCGAAGGGAATTCAGATTCGGAGTTG
CGGGCACGAGGTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig67947:6..320+

>mRNA_H-paniculata_contig67947.14711.1 ID=mRNA_H-paniculata_contig67947.14711.1|Name=mRNA_H-paniculata_contig67947.14711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig67947:6..320+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTTCGACGGCCGTGTCTGTGAGGGACGACGATGAGGTTGTTCCTGC
GGCACAGGTGAGGGGTGACAGTGAGGTTGCTCCCGCTTGTAGGCAATCGA
GTGTTGATTTTTTTGGAAAAGAACTGTCATACAAACGAATAAAAGATGTG
CCTCTTTTCTCCGGGAAGCGAGAAGATTTCCACGGATGGGCTAATGAATT
TTTGGATCTTGCAGCTTTTAACAGGATTCAAAATGGATTCCTCGATGTCA
TAGATGTTCCTGTTAGTGGCGAAGGGAATTCAGATTCGGAGTTGCGGGCA
CGAGGTTTTATGGGTTCGACGGCCGTGTCTGTGAGGGACGACGATGAGGT
TGTTCCTGCGGCACAGGTGAGGGGTGACAGTGAGGTTGCTCCCGCTTGTA
GGCAATCGAGTGTTGATTTTTTTGGAAAAGAACTGTCATACAAACGAATA
AAAGATGTGCCTCTTTTCTCCGGGAAGCGAGAAGATTTCCACGGATGGGC
TAATGAATTTTTGGATCTTGCAGCTTTTAACAGGATTCAAAATGGATTCC
TCGATGTCATAGATGTTCCTGTTAGTGGCGAAGGGAATTCAGATTCGGAG
TTGCGGGCACGAGGTTTT
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