mRNA_H-paniculata_contig679.14703.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 252 bits (643), Expect = 1.770e-65 Identity = 162/436 (37.16%), Postives = 237/436 (54.36%), Query Frame = 2
Query: 311 LTDALRLGDSQVEVSDIVQFGTLDCTALASAEDAATLEISISATESIVADKTSYDSKDGSHFEDGVTRNVWRGTTFIPAQRDDEAGPRTVSMTWGDPCDVQTFSLKITSSRTDGSTVVLKSIPCDPGADIDTCLVEVTIASFLDDGEPV-VSTSTSSEATTLPNGRRRLRAR--ARELQVEGSS----------------VDVMYLYN-EAAMLQIGGVSPAQMASIIFGALASTNEAFVNSLIP-LTFNLAYVGRYP---------DADENGAIAALDNMRANADVVALRDTYEADLVQLVGGFTDRCSVAYSFTAHPSSGFSVVGASCIDGLFHSESFALNMGCYTNRDDASIFQTGYSHGYRFCELPNPFTTIKS--------KPCPDL-PSAPRINHFSNPDVDYLGQPTGLETANCARTISENMATVASYQ 1501
L + L + + DI + G L C +L A D++ L +IS+TE+++A++TSY S DG+ DG R W G P + PRTVSMTW DPCD++TF LK+ S +DGST + S+PC G+ + C+VE+ F D+ + V S S+SS +T+ G R L+ R + EGS +DV+ Y+ EAA + G+S AQ+ + I + + N+A NS I L + L +V P D+D+ LD + AN+ V LR+ Y+ DLVQLVG F C + Y F + GFS+VG++C D H+ A NMGCY +RD++ Q Y HGYR+C +P+ TI S P P+ P P++N+FSNP+V YL +PTG TA+ AR I E+M V++++
Sbjct: 155 LVEVLETDELTAVMGDI-ELGDLLCDSLEDATDSSLLRFTISSTETVIAERTSYSSIDGNVLPDGNARKTWLGEVVDPEPSTNSI-PRTVSMTWTDPCDIETFLLKLVSRNSDGSTSIATSVPCSAGSSSEICMVELQ-KFFYDESDAVDTSQSSSSSSTSKYQGSRMLKERRVSTTFMEEGSRWSQGIPSDRSLQGTTVIDVLIFYSPEAASSE--GISDAQLLTRIVEGMVTLNQAITNSAIADLEYRLVHVAELPYSQMTYDPIDSDDIDLEPELDALAANSAVNDLRNEYQGDLVQLVGYFPGTCGLGYIFNGNAEFGFSLVGSNCFDNFSHTHEIAHNMGCYHDRDNSET-QDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVAVSNFR 584
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 203 bits (517), Expect = 3.300e-50 Identity = 133/404 (32.92%), Postives = 206/404 (50.99%), Query Frame = 2
Query: 440 TESIVADKTSYDSKDGSHFEDGVTRN-------------VWRGTTFIPAQRDDEAGPRTVSMTWGDPCDVQTFSLKITSSRTDGSTVVLKSIPCDPGADIDTCLVEVTI------------------ASFLDDGEPVVSTSTSSEATTLPNGRRRLRARARELQVEGSSV-DVMYLYN-EAAMLQIGGVSPAQMASIIFGALASTNEAFVNSLIP-LTFNLAYVGRYP-------DADENGAIAALDNMRANADVVALRDTYEADLVQLVGGFTDRCSVAYSFTAHPSSGFSVVGASCIDGLFHSESFALNMGCYTNRDDASIFQTGYSHGYRFCELPNPFTTIKS---------KPCPDLPSAPRINHFSNPDVDYLGQPTGLETANCARTISENMATVASYQ 1501
+++++A++TSY S DGS DG+TR W G P + PRTVSMTW DPCD ++F LK+ S DGST + S+PC G+ + C+VE+ + D G ++ S T G R + + + +++G++V DV+ +Y+ EAA + G++ AQ+ + I + + N+A NS I L + L V P +D+ LD + AN++V LR+ Y+ DLVQLVG F C + Y F + GFS+V ++C D H+ A NMGCY +++++ Q Y HG+R+CE +P+ TI S D P PR+N+FSNP+V YL + TG A+ AR I ++M V+ ++
Sbjct: 6 SQTVIAERTSYSSIDGSVLSDGITRKDELTGDGSHGLFQTWLGEVVDPEPSANSI-PRTVSMTWTDPCDTESFLLKLVSRNADGSTSIFTSVPCSAGSSNEICMVELEMFFHDESETEDTXXXXXXXXXXKDQGSRMLKERRVS-TTYTEEGSLRSQGMSSDRRLQGTTVIDVLIVYSPEAAYAR--GIAEAQLLTRIVEGMVTLNQAITNSGIAGLEYRLVQVAELPYSQMAYIPSDDIDLKPELDALAANSNVTDLRNQYQGDLVQLVGYFPGTCGLGYIFNGDAAFGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNNSDT-QHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMVAVSEFR 404
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 176 bits (447), Expect = 1.470e-41 Identity = 98/212 (46.23%), Postives = 119/212 (56.13%), Query Frame = 2
Query: 1610 YVSLGCWNDDGRNRVLTGSSLKSQVD-MTTEKCATECAGSAYFGTQFAGECFCGLSTDEPAKLGPSTSCNMPCTGDAGEICGGNNAINVYKYAD-----------------YNSEGCFVDSGSNRVLTAAVLKDAD--MTTDLCAEFCNGYPFFGTEFGTECFCGSATDVPDELGASEACTFTCPGALAEKCGGRNAISVYRPADISDTPVP 2185
Y GC+ D +RVL+G S+ S MTT CA C GS YFG QF ECFC S D P +LG S C M C+GD+ EICGG+ AI VY+Y+D Y S GCFVD S+RVL+ + + MT CA+FC G +FGTE+ ECFC S+ D PDELG + C TC G +E CGG NAI VY + D P P
Sbjct: 177 YSFAGCYVDS-PDRVLSGDSMMSVNSVMTTAYCADFCEGSDYFGVQFGYECFCSSSGDTPDELGESEDCEMACSGDSSEICGGSYAIQVYEYSDXXXXXXXXXXXXXXXXXYESVGCFVDDSSDRVLSGDSMLSINSVMTAAYCADFCEGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVYM---LEDGPAP 384
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI) HSP 1 Score: 167 bits (422), Expect = 1.310e-40 Identity = 91/227 (40.09%), Postives = 121/227 (53.30%), Query Frame = 2
Query: 1595 TPEGGYVSLGCWNDDGRNRVLTGSSLKSQVDMTTEKCATECAGSAYFGTQFAGECFCGLSTDEPAKLGPSTSCNMPCTGDAGEICGGNNAINVYKYADYNSE---------------GCFVDSGSNRVLTAAVLKDADMTTDLCAEFCNGYPFFGTEFGTECFCGSATDVPDELGASEACTFTCPGALAEKCGGRNAISVYRPADISDTPVPTPSPSGETHCSLWGC 2230
T G ++LGC+ DD +R++ +L S MTTE C C GS YF TQ+ EC+CG + + A G ST C C+GD + CGG NA NVY Y D ++ GC+ D +R++ VL D+ MTT+LC C G +F T++G EC+CGSA G S CT+ C G + CGG +A +VYR D S TP PTPSP+ GC
Sbjct: 192 TEAGSSLALGCYEDDPEDRIMDNLAL-SDSSMTTELCELTCVGSTYFATQYRRECWCGSADADYALHGESTGCTYACSGDTSQTCGGFNAANVYLYPDDSTPSPTPSPIQEGPSPALGCYADDPEDRIMDDLVLSDSSMTTELCELTCEGSTYFATQYGRECWCGSAGADYALHGESTDCTYACSGDTDQTCGGFDAANVYRYPDDS-TPSPTPSPTEAASFVALGC 416
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: UPI001875962B (uncharacterized protein n=1 Tax=Colletotrichum truncatum TaxID=5467 RepID=UPI001875962B) HSP 1 Score: 164 bits (415), Expect = 1.100e-39 Identity = 89/221 (40.27%), Postives = 125/221 (56.56%), Query Frame = 2
Query: 1607 GYVSLGCWNDDGRNRVLTGSSLKSQVDMTTEKCATECAGSAYFGTQFAGECFCGLSTDEPAKLGPSTSCNMPCTGDAGEICGGNNAINVYKY-------------ADYNSEGCFVDSGSNRVLTAAVLKDADMTTDLCAEFC--NGYPFFGTEFGTECFCGSATDVPDELGASEACTFTCPGALAEKCGGRNAISVYRPADISDTPVPTPSPSGETHCSLW 2224
G SLGC+ + +RVL ++ S DMT KCAT CAG YFGTQ++ EC+CG + P P++ CNM C+G E+CGGN +NVYK+ + + +GC+ D+ RVL+ V K A MT ++CA C +GY +FG EFG+EC+CG+ D L + C+ C G+ ++ CGG N ++VYR DIS T S G + S W
Sbjct: 131 GASSLGCFVE-AAHRVLPSKAI-SGSDMTAAKCATNCAGFDYFGTQWSSECYCGNTL--PTVSAPASECNMACSGKGDEVCGGNLRLNVYKFDQASVTAPAPAAVSGFEYKGCYADNIPQRVLSGKVTKSAAMTLEMCAAACGGSGYTWFGVEFGSECYCGTQLDAASSLASERECSMKCSGSGSQNCGGSNRLNVYR-TDISGTASSKESIGGFHYQSCW 346
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI) HSP 1 Score: 160 bits (406), Expect = 3.800e-39 Identity = 114/335 (34.03%), Postives = 163/335 (48.66%), Query Frame = 2
Query: 335 DSQVEVSDIVQFGTLDCTALASAEDAATLEISISATESIVADKTSYDSKDGSHFEDGVTRNVWRGTTFIPAQRDDEAGPRTVSMTWGDPCDVQTFSLKITSSRTDGSTVVLKSIPCDPGADIDTCLVEVTIASFLDDGEPVVSTSTSS------EATTLPNGRRRLRARARELQVEGSSVDVMYLYNEAAMLQIGGVSPAQMASIIFGALASTNEAFVNSLIPLTFNLAYVGRYPDADENGAIAALDNMRANADVVALRDTYEADLVQLVGGFTDRCSVAYSFTAHPSSGFSVVGASCIDGLFHSESFALNMGCYTNRDDASIFQTGYSHGYRFC 1321
D Q V + G L C +L A D+ L +IS+TE+++A++TSY S DG+ F DG TR W G P A PRTVSMTW +PC V++F L + S DGST +++SIPC G+ + C+VE+ + +DG+ V + ++ E+ TL N G SV+ E ML+ A S+ +L S L L Y D + G LD M NA V ALRD +EADLV LVG F + C + F + + GFS++ + C + N+GC +RD+++ T Y HG R+C
Sbjct: 74 DPQATVVVHIGLGELLCDSLEDASDSTLLRFNISSTETVIAERTSYSSIDGNIFPDGETRKTWMGEVVDPEPPAGSA-PRTVSMTWTNPCGVESFLLTVVSHNNDGSTSIVRSIPCAAGSSSEVCMVELAVV--FNDGDSAVDSISADNDDDDFESMTLEN--------------PGESVEGQ----EGRMLK---TIRAPTKSVGKESLHSRGSPGSRELQAGNTQLPYDQMLDDTTDYGP--ELDAMTGNAAVAALRDEHEADLVLLVGYFPNTCGRGWIFNFNEALGFSLMDSICFSNWTQTHEIGHNLGCRHDRDNSNTGMTAYGHGLRYC 382
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI) HSP 1 Score: 155 bits (393), Expect = 9.020e-38 Identity = 85/219 (38.81%), Postives = 117/219 (53.42%), Query Frame = 2
Query: 1544 PFKTMPPPTXXXXXXXXTPEGGYVSLGCWNDDGRNRVLTGSSLKSQVDMTTEKCATECAGSAYFGTQFAGECFCGLSTDEPAKLGPSTSCNMPCTGDAGEICGGNNAINVYKYAD------YNSEGCFVDSGSNRVLTAAVLKDADMTTDLCAEFCNGYPFFGTEFGTECFCGSATDVPDELGASEACTFTCPGALAEKCGGRNAISVYRPADISDTPV 2182
P T P T GG +SLGC+NDDG +R++ +L MTTE C CAGS+YF TQ+ EC+CG + + K G ST C C G+ E CGG A + Y Y+ ++ GCF D +R++ A+ + + MTT+LC C G +F T++G EC+CG A ++ G S CT+ CPG E CGG A SVY + + TP
Sbjct: 6 PMDTRPSETTPCVAKTIAARGGPLSLGCFNDDGDDRIMDDRALVD-TSMTTELCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASAYAYSTVEPTPTFSYVGCFQDD-QDRIMELALTESSSMTTELCELTCAGSYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPT 222
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: UPI001874BD84 (uncharacterized protein n=1 Tax=Colletotrichum truncatum TaxID=5467 RepID=UPI001874BD84) HSP 1 Score: 156 bits (394), Expect = 4.800e-35 Identity = 81/209 (38.76%), Postives = 121/209 (57.89%), Query Frame = 2
Query: 1607 GYVSLGCWNDDGRNRVLTGSSLKSQVDMTTEKCATECAGSAYFGTQFAGECFCGLSTDEPAKLGPSTSCNMPCTGDAGEICGGNNAINVYKY-----------------ADYNSEGCFVDSGSNRVLTAAVLKDADMTTDLCAEFC--NGYPFFGTEFGTECFCGSATDVPDELGASEACTFTCPGALAEKCGGRNAISVYRPADISDT 2176
G SLGC+ + G RVL ++ + DMT KCAT CAG YFGTQ++ EC+CG + PA P++ CNM C G++ E+CGG+ +NVY+ + ++ +GC+ D+ RVL+ V+KD MT ++CA C +GY +FG EF TEC+CG A D A+ C+ C G ++ CGG N +S++ D++D+
Sbjct: 140 GITSLGCFAE-GTQRVLPEKTVAAS-DMTAAKCATNCAGYKYFGTQWSSECYCGNTA--PAITVPTSECNMVCAGNSSELCGGSLRLNVYELPQSSQASPLSVPVIPSVSGFDYKGCYTDNVPYRVLSGKVIKDPAMTLEMCAAACKNSGYSWFGVEFSTECYCGMALDKASTSTAAAECSMACSGNSSQSCGGANRLSLFARPDVADS 344
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI) HSP 1 Score: 150 bits (380), Expect = 1.020e-34 Identity = 82/200 (41.00%), Postives = 107/200 (53.50%), Query Frame = 2
Query: 1601 EGGYVSLGCWNDDGRNRVLTGSSLKSQVDMTTEKCATECAGSAYFGTQFAGECFCGLSTDEPAKLGPSTSCNMPCTGDAGEICGGNNAINVYKY-------------ADYN---SEGCFVDSGSNRVLTAAVLKDADMTTDLCAEFCNGYPFFGTEFGTECFCGSATDVPDELGASEACTFTCPGALAEKCGGRNAISVY 2152
EG V+LGC+ DD +R++ +L S MTTE C C G+ YF TQ+ EC+CG + + A G S C C GDA E CGG +A NVY Y AD + S GC+ D NR++ L D MTT+LC + C G FF T++G EC+CGSA G S CT+ C G + CGG +A +VY
Sbjct: 215 EGSSVALGCYEDDREDRIMDDLAL-SDYSMTTELCEQTCVGNTYFATQYGRECWCGSAGADYASHGESADCTYACAGDADETCGGFDAANVYLYTGESTPSPTPSPTADESGPLSLGCYEDDRENRIMDDLALSDFSMTTELCEQTCLGNTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVY 413
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Match: B2ACF9_PODAN (Podospora anserina S mat+ genomic DNA chromosome 3, supercontig 1 n=2 Tax=Podospora TaxID=5144 RepID=B2ACF9_PODAN) HSP 1 Score: 152 bits (385), Expect = 1.720e-34 Identity = 78/198 (39.39%), Postives = 112/198 (56.57%), Query Frame = 2
Query: 1610 YVSLGCWNDDGRNRVLTGSSLKSQVDMTTEKCATECAGSAYFGTQFAGECFCGLSTDEPAKLGPSTSCNMPCTGDAGEICGGNNAINVYKY---------------ADYNSEGCFVDSGSNRVLTAAVLKDADMTTDLCAEFCN--GYPFFGTEFGTECFCGSATDVPDELGASEACTFTCPGALAEKCGGRNAISVY 2152
Y LGC+ D G +RVL S + S DMT EKCA C G YFGTQ++ EC+CG +++P P++ CNMPC+G+ E CG +NVY++ + + +GC+ D+ RVL + DMT + CA C GY FFG E+GTECFCG++ D + C+ TC G +++CGG N +++Y
Sbjct: 39 YTVLGCFVDTG-SRVLP-SKVISTHDMTAEKCAANCRGYDYFGTQWSSECYCG--SNKPTDAAPASECNMPCSGNPDETCGAGMRLNVYEFDRACDSDTEEPPVVISGFEYKGCYTDNVPQRVLGGITVAQHDMTLEKCAATCTAGGYAFFGVEYGTECFCGTSLDAASTKVSEGECSMTCMGNHSQQCGGPNRLNIY 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig679.14703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig679.14703.1 >prot_H-paniculata_contig679.14703.1 ID=prot_H-paniculata_contig679.14703.1|Name=mRNA_H-paniculata_contig679.14703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=997bp MKSVYHHILLLATFIAGNSAIVLIPNNTAAGDNSALTDALRLGDSQVEVSback to top mRNA from alignment at H-paniculata_contig679:4466..25625+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig679.14703.1 ID=mRNA_H-paniculata_contig679.14703.1|Name=mRNA_H-paniculata_contig679.14703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=21160bp|location=Sequence derived from alignment at H-paniculata_contig679:4466..25625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig679:4466..25625+ >mRNA_H-paniculata_contig679.14703.1 ID=mRNA_H-paniculata_contig679.14703.1|Name=mRNA_H-paniculata_contig679.14703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5982bp|location=Sequence derived from alignment at H-paniculata_contig679:4466..25625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |