mRNA_H-paniculata_contig676.14665.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig676.14665.1
Unique NamemRNA_H-paniculata_contig676.14665.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: D7G5F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.110e-18
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 DTGNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFANR 264
            D G W +  T D++ R+ ADWFRIGFEP+F D +Q+ S + V+ L++W   A   VLVD++  Q  +F A+H+    +++   PFANR
Sbjct:  300 DKGQWETVQTTDEDARRNADWFRIGFEPLFADFTQAGSWFIVYTLIEWAVLACIAVLVDNTAVQCGLFCAIHSMTFILLVACKPFANR 387
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BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 5.070e-18
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    7 GNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFAN 261
            G W +A T ++  R+E  WFRIGFEP+FVD ++S + +  F L++W A    G L+D+SV QLS+F ALH     +++   PFAN
Sbjct: 1150 GTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFAN 1234
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BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 5.100e-18
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 DTGNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFAN 261
            D G W +  T D+++ +E DWFRIGFEPVFVD ++  + + V  L++W AFA  GV++++SV QL +F  LH+    +++ L PFAN
Sbjct: 1500 DKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFAN 1586
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BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.770e-17
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    1 DTGNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFAN 261
            D G+W +  T D++ R++ADWFRIGFEP++ D +Q+ S + V+ L++W   A   VLVD+S  Q  +F ALH+    +++   PFAN
Sbjct:  422 DKGHWNTVQTADEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFAN 508
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BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: D8LN89_ECTSI (Liver stage antigen 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN89_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.330e-17
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    7 GNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFAN 261
            G W S  T D+E ++  DWFRIGFEP+FVD + + S + V+ L++  A A  GV+VD+SV QLS+FGA +     +++ L PFAN
Sbjct: 2515 GEWESVDTPDEEDKRARDWFRIGFEPLFVDFTGAGSWFAVYALIELVANAVVGVVVDNSVLQLSLFGAFNTVSFLLLVVLKPFAN 2599
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BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.610e-15
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 DTGNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFAN 261
            D G W +  T ++ I +E DWFRIGFEPVFVD ++  + + V  L++W + A  GV++D+S  QL +F  L +    +++ L PFAN
Sbjct: 1722 DKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFAN 1808
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BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 4.860e-15
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 DTGNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFAN 261
            D G W +  T ++ I +E DWFRIGFEPVFVD ++  + + V  L++W + A  GV++D+S  QL +F  L +    +++ L PFAN
Sbjct: 1681 DKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFAN 1767
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BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.380e-15
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 DTGNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFAN 261
            D G W +  T + + R++ADWFRIGFEP+F D +Q+ S + ++ L++    A+  VLVD+S  Q  +F A+H+    +++   PFAN
Sbjct:  467 DKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFAN 553
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BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: D7G837_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G837_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 6.060e-13
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    7 GNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFANR 264
            G W +    D + ++  +WFRIGFEP+FVD +++ S + V+ L++    A  GVL+D+S  QL IF  L+   L +++ L PFANR
Sbjct:  243 GAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAVYALMEAAVIAGVGVLIDNSQVQLLIFLGLNVVQLVLVVRLTPFANR 328
[Close]
BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Match: D7G1B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B8_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.860e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    7 GNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFAFATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFANR 264
            G W +    D + ++  +WFRIGFEP+FVD +++ S + V+ L++    A   VL+D+S  QL IF  L+   L +++ L PFANR
Sbjct:  132 GAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAVYALMEAAVIAGVEVLIDNSQVQLLIFLGLNVVQLVLVVRLTPFANR 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig676.14665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G5F3_ECTSI3.110e-1842.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN93_ECTSI5.070e-1844.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWS4_ECTSI5.100e-1844.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTJ3_9PHAE1.770e-1742.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN89_ECTSI3.330e-1747.06Liver stage antigen 3 n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JD90_9PHAE2.610e-1541.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG6_ECTSI4.860e-1541.38Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5J9C2_9PHAE6.380e-1539.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G837_ECTSI6.060e-1340.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1B8_ECTSI2.860e-1239.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig676contigH-paniculata_contig676:23074..25252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue8.6e-09
Seed eggNOG ortholog2880.D8LIK9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size269
Cds size267
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig676.14665.1prot_H-paniculata_contig676.14665.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig676 23074..25252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.1725166-CDS-H-paniculata_contig676:23073..231121622930804.1725166-CDS-H-paniculata_contig676:23073..23112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig676 23074..23112 +
1691481459.920361-CDS-H-paniculata_contig676:23073..231121691481459.920361-CDS-H-paniculata_contig676:23073..23112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig676 23074..23112 +
1622930804.1963873-CDS-H-paniculata_contig676:23523..236251622930804.1963873-CDS-H-paniculata_contig676:23523..23625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig676 23524..23625 +
1691481459.929949-CDS-H-paniculata_contig676:23523..236251691481459.929949-CDS-H-paniculata_contig676:23523..23625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig676 23524..23625 +
1622930804.2153692-CDS-H-paniculata_contig676:25126..252521622930804.2153692-CDS-H-paniculata_contig676:25126..25252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig676 25127..25252 +
1691481459.937755-CDS-H-paniculata_contig676:25126..252521691481459.937755-CDS-H-paniculata_contig676:25126..25252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig676 25127..25252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig676.14665.1

>prot_H-paniculata_contig676.14665.1 ID=prot_H-paniculata_contig676.14665.1|Name=mRNA_H-paniculata_contig676.14665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
DTGNWASAATHDQEIRQEADWFRIGFEPVFVDLSQSCSSYFVFLLLKWFA
FATAGVLVDDSVWQLSIFGALHAFDLAVIITLAPFANR*
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mRNA from alignment at H-paniculata_contig676:23074..25252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig676.14665.1 ID=mRNA_H-paniculata_contig676.14665.1|Name=mRNA_H-paniculata_contig676.14665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2179bp|location=Sequence derived from alignment at H-paniculata_contig676:23074..25252+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATACCGGAAACTGGGCGTCCGCGGCCACGCACGATCAGGTAAGACTGTT
CGTGGACCTAAACTCCGCTCGTGTGGGATGACTAAAAAGTAGAGTATAGT
CATTTTGGAAAAAGCGAAGATTGATTGCTCATACCCATCCAGTAGAATCC
ATGCACGTGCTTACAATGTTGACGTAGGCAACCGTCCTCTTTCGTTATAC
GCATCTACGACGCCTTTCCGCTAGTGTTGGTATCGTTGGATGTTACCTAT
CAGCTCTCGTGTACACTACTATCTTTATCGCGGGCGAGGACTAAAAAAAA
ACTGCCGGCAGTTATCGACGACACAGCTGAGGAGCCTAATTTTTATAGTC
GTCTCAGCTTAGCCGTACACGAACTTCTGTGTTACCGTTATCTGCCCGCA
GCTTTGTCCCAGCAAAAATCTCTCTCATGCACCCTTTAATGACCCAACAG
GAAATACGCCAGGAGGCTGACTGGTTCCGCATCGGATTCGAGCCGGTATT
TGTGGATCTGTCGCAATCTTGCAGTTCGTATTTCGTCTTCCTCTTGCTCA
AGGTACGATGGAATGCCTTCTTTTTGGCCTAGCAACGTCTGCCCATTCCA
CTGTAGCGATAGAAATAACTGTCTTGCCTGGTATTTGCTGCAGGATATTG
TGTTTGGTGTGTGGAGACTAATCGGTATGCCAGCAGTGGGCCTTGATTAA
TCTCAGGCAGACTCGCTGGTAACTTACGAATGACCATATCCCGGGCACAG
CTCGCTTCCCTAGGAAGCTTTCTTTTAGGACCTCGAAAGCGTTCGGGTTG
TGCGGAGACGGTATTTGGATATTACAGCCCCGTCCCGACGCAGAGTCAGT
GATGTATTCATTTTCAGTATCAGCACGTAAGCACGTGCTGTACTCATTGT
TTTGGGAGATGGTTGATGGTGCGTTCGAATTTTGGTAAGACGACAATTGA
CGGTTTGCGGGAGACGATCTTATTTGCGGGTGATTGAGTCATTGTCGATA
ACTAAAATTGCAGTAAAGATGGTGGTATTTTGCGTTTGTTTGCATTCGAG
TGGGTATTTTGTTGTTCTATGTGGAATTGAAGAACATGTAGACCTCATTT
GTTCACAGAATCGCTGCCTGTTTTTCGGTGGGGGGCGGGAGACGACAATA
ACCTTACCCGGAGTAAGTTCGTCAATGTGTACTCGACTGTAGTTTTCTTG
CTATGCCCACCGTGTAGCTTCATAATCAGTCACGTACGTGATCGGTATGA
TTTTCTCAAAACGGTCGGATCAAAAGGGCGTACAGAACACTTTCGATGGG
TACTTATGATAGCGCTGGCGAATGGTTGGCTTCTCGTGCCCTAGGCCTAA
GATCAAGTGAGGGAAAGGTTTCCCGGTGGACTTGACTGAGGTACTACAAC
AATATTCCAAGCAAGTCAAGGGACTGCGAGGCGCTCGCTAGCACTCAAAG
CCGTCCAACTGGATCCCGATTATTCGTGGGTGCACTATTTAATATCATCT
GTACATTGTACACAGCGTTCATCAAGCATGCGGAAGCACACATCCCACGA
TAGTATGCAAAGAGACGGGATAAGCCGAAACCTCCAGAAGAAACATACGG
ACACACTCAATTGCTTCAACCTTATCAACTTTGGGTCTGTATGATCTGGA
CTCCCCGCCTCCGCCTTGGCTCCTTCCTCTTGAGGACATGTGGTCGACGA
TGGCCAAACATAGCACGCCTACAATACATAGTACCCCTCTCTCCGCCCTT
TCCAACCATCTGGGGGTTGTAGGCGGAGGGAGTGACCTAAGTTACTATAT
TTTCGGTCTGCGGACACCTTTGGGATTGTTGCATAGAGTGGGCCTTGGTC
TGCAGCGTCGGTAAGGTCATATTTTAACGATGAGGTGCCAATTTAAAGCC
TGCCTCCTCCCCAAAGAGTCCCTCCACCCCTTGCTTCACCCATCTTCTTC
AGATCGCATGCCCGCCCCCTGATATTTCCTCTCGTGGCTCTTCCGACTAC
ATCGTGCGACCATTTACGCTGTCTCGGGAACGCATTGTGTGGACTTACGG
CAGTGGTTCGCGTTTGCCACAGCGGGGGTCCTCGTGGATGACAGCGTGTG
GCAACTTTCAATTTTTGGCGCACTGCACGCTTTTGATCTAGCTGTGATCA
TCACGCTTGCGCCTTTCGCAAACAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig676:23074..25252+

>mRNA_H-paniculata_contig676.14665.1 ID=mRNA_H-paniculata_contig676.14665.1|Name=mRNA_H-paniculata_contig676.14665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig676:23074..25252+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATACCGGAAACTGGGCGTCCGCGGCCACGCACGATCAGGATACCGGAAA
CTGGGCGTCCGCGGCCACGCACGATCAGGAAATACGCCAGGAGGCTGACT
GGTTCCGCATCGGATTCGAGCCGGTATTTGTGGATCTGTCGCAATCTTGC
AGTTCGTATTTCGTCTTCCTCTTGCTCAAGGAAATACGCCAGGAGGCTGA
CTGGTTCCGCATCGGATTCGAGCCGGTATTTGTGGATCTGTCGCAATCTT
GCAGTTCGTATTTCGTCTTCCTCTTGCTCAAGTGGTTCGCGTTTGCCACA
GCGGGGGTCCTCGTGGATGACAGCGTGTGGCAACTTTCAATTTTTGGCGC
ACTGCACGCTTTTGATCTAGCTGTGATCATCACGCTTGCGCCTTTCGCAA
ACAGGTAATGGTTCGCGTTTGCCACAGCGGGGGTCCTCGTGGATGACAGC
GTGTGGCAACTTTCAATTTTTGGCGCACTGCACGCTTTTGATCTAGCTGT
GATCATCACGCTTGCGCCTTTCGCAAACAGGTAA
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