mRNA_H-paniculata_contig6685.14573.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6685.14573.1
Unique NamemRNA_H-paniculata_contig6685.14573.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: A0A6H5JIA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA6_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 6.490e-91
Identity = 141/198 (71.21%), Postives = 173/198 (87.37%), Query Frame = 3 
Query:  336 PQPKALPRGNNLLVVGLGNPGERFKMTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGAS-GQPLSDHVMGDFSKAEKKELDSLVTEACDAVEHWIEEEDIEKVMGRWNS 926
            PQPKA PRG+NLLVVGLGNPG+++KMTRHN GFLVAEELA R+G T KIK+AF GEYCSV +K KSVGILRPIT+MN SG SARKV+++FKLP+NAA+VL DE+ALDFGQLR++ KG  GGHNGLKS++A LKT EY+RL+IGVG +   + LSDHV+G+F++ EKKELD+++ +ACDAVEHWIEEED+ KVM R+NS
Sbjct:  165 PQPKAPPRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKHKSVGILRPITYMNNSGISARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFNS 362
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BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: D8LSW9_ECTSI (Peptidyl-tRNA hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW9_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 1.830e-76
Identity = 119/173 (68.79%), Postives = 148/173 (85.55%), Query Frame = 3 
Query:  411 MTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGAS-GQPLSDHVMGDFSKAEKKELDSLVTEACDAVEHWIEEEDIEKVMGRWNS 926
            MTRHN GFLVAEELA R+G T KIK+AF GEYCSV +  KSVGILRPIT+MN SG SARKV+++FKLP+NAA+VL DE+ALDFGQLR++ KG  GGHNGLKS++A LKT EY+RL+IGVG +   + LSDHV+G+F++ EKKELD+++ +ACDAVEHW+EEED+ KVM R+NS
Sbjct:    1 MTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVNDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWVEEEDMAKVMTRFNS 173
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BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: A0A4D9CWV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV7_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.220e-66
Identity = 117/205 (57.07%), Postives = 158/205 (77.07%), Query Frame = 3 
Query:  315 RNRPAKKPQ-PKALPRGNNLLVVGLGNPGERFKMTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGASGQPLSDHVMGDFSKAEKKELDSLVTEACDAVEHWIEEEDIEKVMGRWNS 926
            R+ P KK      +PR  NLL+VGLGNPG+ + MTRHN GFL  + LA R GA F+++SAF GEY  V+ KGKSVG+L+P TFMN SGQS RKV++YFKLP+++ LV+ DE+ALD GQ+R+R  GS GGHNGLKSIE+ LK K+Y+RL+IGVGGA+   + DHV+G FS++E+K LD ++ +A +A+E WIE+++ +KVM R N+
Sbjct:  728 RSAPIKKTHHADNVPRSKNLLIVGLGNPGKEYAMTRHNAGFLAVDLLARRLGADFRLRSAFQGEYGCVAYKGKSVGLLKPTTFMNRSGQSLRKVLDYFKLPVSSVLVVVDEVALDIGQIRLRQTGSAGGHNGLKSIESCLKCKDYNRLRIGVGGAAPGSMVDHVLGQFSRSERKVLDDMLIDAVEAIEDWIEDDNTDKVMNRVNA 932
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BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: A0A836CKJ3_9STRA (Peptidyl-tRNA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ3_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.770e-57
Identity = 100/173 (57.80%), Postives = 130/173 (75.14%), Query Frame = 3 
Query:  411 MTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGASGQPLSDHVMGDFSKAEKKELDSLVTEACDAVEHWIEEEDIEKVMGRWNSR 929
            MTRHNIGFLVA+EL+ R+G   K +S F G Y S  +KGKSVG+L+P TFMN SGQ+ARKV ++FKL  +  LVL+D++ALDFG LR+R KGS GGHNGLKS++  L T++Y+RL+IGVG A  + L  HV+G+FSK E+KELD +V++A   VEHWI E+D   VM   N +
Sbjct:    1 MTRHNIGFLVADELSRRWGCALKTQSKFQGLYGSAQVKGKSVGVLKPSTFMNNSGQAARKVTDFFKLNADHVLVLTDDVALDFGALRLRMKGSAGGHNGLKSLQQHLGTQDYARLRIGVG-APRKDLVSHVLGEFSKVERKELDMVVSDAASVVEHWIAEDDAALVMTAINGK 172
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BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: A0A2A4YKD0_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A2A4YKD0_9BACT)

HSP 1 Score: 191 bits (485), Expect = 3.830e-53
Identity = 89/171 (52.05%), Postives = 122/171 (71.35%), Query Frame = 3 
Query:  372 LVVGLGNPGERFKMTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGASGQPLSDHVMGDFSKAEKKELDSLVTEACDAVEHWI 884
            L+VGLGNPG++++MTRHN+GFLV E+LA R GAT     AFMG +   SI+GK V  L P TFMNLSGQ+ R+ I+Y+ L     L++SD++AL FG+LR+R KGS GGHNGLK +E  L T+EY RL++GVG    + L ++V+G+F+  EKK L  +  +A  A+E W+
Sbjct:    7 LIVGLGNPGKKYEMTRHNMGFLVVEKLAERLGATLSPNKAFMGRFGKASIEGKKVYFLLPSTFMNLSGQAVRRCIDYYNLTKERLLIVSDDVALPFGKLRIREKGSAGGHNGLKDVERHLGTQEYQRLRVGVGSNGDEDLDEYVVGNFNSHEKKLLPEIQIDAALALEEWV 177
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BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: A0A7S3ACE0_9RHOD (Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ACE0_9RHOD)

HSP 1 Score: 190 bits (482), Expect = 1.860e-52
Identity = 81/185 (43.78%), Postives = 130/185 (70.27%), Query Frame = 3 
Query:  357 RGNNLLVVGLGNPGERFKMTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGASGQPLSDHVMGDFSKAEKKELDSLVTEACDAVEHWIEEEDIEKVM 911
            RG+ L V+GLGNPG  F+ TRHN+GF + E  A R+G   K+   ++ E C + ++ K+V +++P+TFMNLSG S RK+++++KLP +A L+++D+I L+ G++R+R+KGS GGHNGLK IE  L T+ Y RLK+GVGG +   L D+V+G F ++E   +D ++    + ++ W++  D+ KV+
Sbjct:   32 RGSRLAVIGLGNPGNEFRSTRHNVGFDIIEAFAQRHGGNMKMAQKYLAEMCEIKLENKTVMLVKPMTFMNLSGTSVRKIVDFYKLPHDAILIVADDIYLELGRVRLRAKGSSGGHNGLKHIEKSLGTQIYPRLKVGVGGPNKADLKDYVLGKFKRSEVDAVDDMLWTCVELIDEWVKNADLSKVV 216
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BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: F8L348_SIMNZ (Peptidyl-tRNA hydrolase n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) TaxID=331113 RepID=F8L348_SIMNZ)

HSP 1 Score: 179 bits (454), Expect = 6.300e-49
Identity = 85/179 (47.49%), Postives = 120/179 (67.04%), Query Frame = 3 
Query:  369 LLVVGLGNPGERFKMTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGASGQPLSDHVMGDFSKAEKKELDSLVTEACDAVEHWIEEEDIEK 905
             L+ GLGNPG++++ TRHN GF+V +  A + G TFK  S   GE  S ++    V +L P T+MNLSGQS RKV++Y+K+ +   LV++D+IALDFG LR R KGS GGHNGLK IE+ L T+EY RL++G+G      L D+V+  FS  E+K+L  ++ E  D ++ W+ +E  EK
Sbjct:    6 FLITGLGNPGKKYENTRHNFGFMVVKAFAEKQGWTFKADSNLQGEIASGTVSESKVILLLPKTYMNLSGQSVRKVLDYYKIDLTHFLVVADDIALDFGTLRFREKGSSGGHNGLKDIESHLGTQEYQRLRLGIGDRDHGYLEDYVLSPFSAEEQKDLPKVIEEGVDFLDKWLMKETYEK 184
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BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: A0A429XTI9_9BACI (Peptidyl-tRNA hydrolase n=1 Tax=Siminovitchia acidinfaciens TaxID=2321395 RepID=A0A429XTI9_9BACI)

HSP 1 Score: 176 bits (446), Expect = 8.150e-48
Identity = 89/187 (47.59%), Postives = 129/187 (68.98%), Query Frame = 3 
Query:  372 LVVGLGNPGERFKMTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGASGQ-PLSDHVMGDFSKAEKKELDSLVTEACDAVEHWIEEEDIEKVMGRWNSR 929
            L+VGLGNPG R++ TRHNIGF V EELA+R G T   +S F G Y +V   GK V +L+P+T+MNLSG+S R +++YF++PI   LV+ D++ L  G++R+R KGS GGHNG+KS    L T E++R++IG+    G   + D+V+G FS+ E +E+ S++    DA E W+E   +E VM R+NS+
Sbjct:    3 LIVGLGNPGSRYEKTRHNIGFEVIEELANRSGTTLN-ESKFNGLYANVRNNGKKVILLKPLTYMNLSGESIRPLMDYFRIPIENVLVIYDDLDLPVGKIRLRQKGSAGGHNGIKSTIQHLGTPEFNRIRIGINRPPGDMKVPDYVLGKFSREEWEEMQSVIQTCADACEEWMEAPFLE-VMNRFNSK 187
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BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: A0A2V3IG78_9FLOR (Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG78_9FLOR)

HSP 1 Score: 178 bits (451), Expect = 2.030e-47
Identity = 89/201 (44.28%), Postives = 137/201 (68.16%), Query Frame = 3 
Query:  315 RNRPAKKPQPKALPRGNNLLVVGLGNPGERFKMTRHNIGFLVAEELAHRYGAT-FKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGAS--GQPLSDHVMGDFSKAEKKELDSLVTEACDAVEHWIEEEDIEKV 908
            + R ++ P P+   RGN LLVVGLGNPG RF  TRHN+GF + ++ A R+ A+ F+ +S+  G+     +  +SV +L+P TFMN SG++ R  ++Y   P+ A LV++D+I+LD G +R+R+KGS GGHNGLKSI+  +    Y+RL+IGVG  S   +  +D V+G FS++EK+ LD +  +  +A+++W++E  IEKV
Sbjct:   61 KQRNSRPPPPE---RGNKLLVVGLGNPGPRFDNTRHNVGFTLLDQYAARHSASKFRRESSVQGDVARFHLHDRSVMLLKPSTFMNASGRAVRAALKYIDAPVAALLVVTDDISLDLGDIRLRAKGSAGGHNGLKSIQQCVGGMNYARLRIGVGSPSRGAEDWADFVLGSFSRSEKQVLDKVEWDVMEAIDYWVDEASIEKV 258
[Close]
BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Match: A0A6M1YH46_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1YH46_9BACT)

HSP 1 Score: 173 bits (439), Expect = 2.020e-46
Identity = 79/176 (44.89%), Postives = 119/176 (67.61%), Query Frame = 3 
Query:  363 NNLLVVGLGNPGERFKMTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITFMNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGLKSIEAQLKTKEYSRLKIGVGGASGQPLSDHVMGDFSKAEKKELDSLVTEACDAVEHWIEE 890
            +  L+VGLGNPG ++K+TRHNIGF + + LA ++G   K K  F+ E+  + + GK V + +P TFMNLSG S +K   ++++P +  LV+ DE  L+FG +R+R+KGS GGHNGLKS++  L T+ Y RL+ GVGG++ Q L   V+G F+K E+  L+  +  AC  V+ W++E
Sbjct:   12 DKFLIVGLGNPGLQYKLTRHNIGFKIVDALAKQFGVKLKKKKEFLAEFVKLKLDGKEVFLQKPQTFMNLSGLSVQKSAAFYRVPSSHILVICDEAYLEFGDMRLRAKGSSGGHNGLKSVQESLGTEHYPRLRFGVGGSAIQDLERFVLGRFTKDEQSVLEEFILAACHIVKTWVDE 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6685.14573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIA6_9PHAE6.490e-9171.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSW9_ECTSI1.830e-7668.79Peptidyl-tRNA hydrolase n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CWV7_9STRA3.220e-6657.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836CKJ3_9STRA1.770e-5757.80Peptidyl-tRNA hydrolase n=1 Tax=Tribonema minus Ta... [more]
A0A2A4YKD0_9BACT3.830e-5352.05Peptidyl-tRNA hydrolase n=1 Tax=Candidatus Aeropho... [more]
A0A7S3ACE0_9RHOD1.860e-5243.78Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus... [more]
F8L348_SIMNZ6.300e-4947.49Peptidyl-tRNA hydrolase n=1 Tax=Simkania negevensi... [more]
A0A429XTI9_9BACI8.150e-4847.59Peptidyl-tRNA hydrolase n=1 Tax=Siminovitchia acid... [more]
A0A2V3IG78_9FLOR2.030e-4744.28Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis cho... [more]
A0A6M1YH46_9BACT2.020e-4644.89Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6685contigH-paniculata_contig6685:978..8308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.7
Seed ortholog evalue1.3e-64
Seed eggNOG ortholog2880.D8LSW9
KEGG koko:K01056
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aminoacyl-tRNA hydrolase activity
EggNOG OGsCOG0193@1,KOG2255@2759
EC3.1.1.29
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Exons5
Model size2039
Cds size528
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.8616164-UTR-H-paniculata_contig6685:977..11301622930790.8616164-UTR-H-paniculata_contig6685:977..1130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6685 978..1130 +
1691481453.7037835-UTR-H-paniculata_contig6685:977..11301691481453.7037835-UTR-H-paniculata_contig6685:977..1130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6685 978..1130 +
1622930790.8753467-UTR-H-paniculata_contig6685:2173..24301622930790.8753467-UTR-H-paniculata_contig6685:2173..2430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6685 2174..2430 +
1691481453.722345-UTR-H-paniculata_contig6685:2173..24301691481453.722345-UTR-H-paniculata_contig6685:2173..2430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6685 2174..2430 +
1622930790.953707-UTR-H-paniculata_contig6685:7207..83081622930790.953707-UTR-H-paniculata_contig6685:7207..8308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6685 7208..8308 +
1691481453.773319-UTR-H-paniculata_contig6685:7207..83081691481453.773319-UTR-H-paniculata_contig6685:7207..8308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6685 7208..8308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.889471-CDS-H-paniculata_contig6685:2430..25171622930790.889471-CDS-H-paniculata_contig6685:2430..2517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6685 2431..2517 +
1691481453.7317982-CDS-H-paniculata_contig6685:2430..25171691481453.7317982-CDS-H-paniculata_contig6685:2430..2517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6685 2431..2517 +
1622930790.9043791-CDS-H-paniculata_contig6685:3716..38091622930790.9043791-CDS-H-paniculata_contig6685:3716..3809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6685 3717..3809 +
1691481453.7446027-CDS-H-paniculata_contig6685:3716..38091691481453.7446027-CDS-H-paniculata_contig6685:3716..3809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6685 3717..3809 +
1622930790.9182484-CDS-H-paniculata_contig6685:6069..62501622930790.9182484-CDS-H-paniculata_contig6685:6069..6250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6685 6070..6250 +
1691481453.7542992-CDS-H-paniculata_contig6685:6069..62501691481453.7542992-CDS-H-paniculata_contig6685:6069..6250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6685 6070..6250 +
1622930790.9355223-CDS-H-paniculata_contig6685:7040..72071622930790.9355223-CDS-H-paniculata_contig6685:7040..7207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6685 7041..7207 +
1691481453.7642114-CDS-H-paniculata_contig6685:7040..72071691481453.7642114-CDS-H-paniculata_contig6685:7040..7207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6685 7041..7207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6685.14573.1prot_H-paniculata_contig6685.14573.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6685 2431..7207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6685.14573.1

>prot_H-paniculata_contig6685.14573.1 ID=prot_H-paniculata_contig6685.14573.1|Name=mRNA_H-paniculata_contig6685.14573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MTRHNIGFLVAEELAHRYGATFKIKSAFMGEYCSVSIKGKSVGILRPITF
MNLSGQSARKVIEYFKLPINAALVLSDEIALDFGQLRVRSKGSPGGHNGL
KSIEAQLKTKEYSRLKIGVGGASGQPLSDHVMGDFSKAEKKELDSLVTEA
CDAVEHWIEEEDIEKVMGRWNSRSR*
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mRNA from alignment at H-paniculata_contig6685:978..8308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6685.14573.1 ID=mRNA_H-paniculata_contig6685.14573.1|Name=mRNA_H-paniculata_contig6685.14573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7331bp|location=Sequence derived from alignment at H-paniculata_contig6685:978..8308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGGTGGATTGCGGCAGCTTCCACACGACCACGACTACTGCGCCCGCGA
GCACTTCTCAATCGCCAGCCGTCGCCGTCGTTGTTATCGTCATTCCGCAC
CTCCGCCACTGAAACCAACGGGACGTTTGCGCAGACATCATCGTCATCCT
CAGGTCGGTCGGTCGGTCGGTCGGTCGGTTATAATATATATTATTAGCAT
ATTTGACCCATTTGCCCGGTCGGTCCAATCTGCATACGCCAACAGCATCA
CGAGGGGAAGCATTGTAGGTTCGCCCGGCGGCATCCCGCTGCAGGTGAAG
GACGCAGCACGGCGGGTGTGTCATAGACTCTGCAGTCACCGTTGTCAATG
GCGAACAATAGTGCTATACTGTTGCGGCAGAGATAAAGCTAAAGATCATT
GTCGGCCCAGAAATTTTGATTTTGAGATTATTTCGAAATTAGTTCTGAAG
AGGTAACGGCCGTAGCAGTAGAGTATGATCACGGTGACGTTCGTGATTGT
TCTCAACCTTAGGACTCGCTGCGCTTGCCTTGGGAGCTTGCGTAGCAAAC
GATACTGCACGCTGCGCTCATATGAAGATTCGTTTTTCAGGGGTAACTTG
ACCACAAATTCGAACACCAAAAGTTCCGAAATAATAATCACCAGCAATAT
TGTTACCATATTATAATACTAAAGAGTTAGGATATGTCGGAGATACTGGG
GTTAACGTAAACAGTGTCGGGATGTTCGAAATTGGAGATCCTAACGGGGG
GAAAAGATCGCAATAGTGGACTGCCATGTATAATCTAGTCATCTTGAATA
ATGGGATAAGGTTATGGTCATCATTCTGGATAAAAAAAATTTCAGTCTGT
ACTAAAGTATCAAATCTAGTTACTGCATGTATTTATTTAGGTAAAAGCTC
CAGATCTATAGTAGCATCGGTAGTTTTATAGTTGACCAGTAACATCCATA
TATATTCCTGTGTTGATATATTAATACAACTACTGTATGTACGAAGGAGA
ACACCACGTGCTGTACATGAACCCCCAAACCAACACGTCGAATCGCCGCA
AATAATTACAAAAGGTTTAAATTACACCATACCATACCGGCACTGCCCGA
CGACTCCGCATCCAACATGATGCCCCCCACCCCCCTCTCGCTCCTCTTCA
CCTCCCTTTTCCTTTGCCGACGGCTGGCCGCGAACCTTCTTCATAGGCGA
AACACACGGCGCGAGTGCAGACAATATCGAACCCGTCTCTAAGGGAGAGC
CCACCGGTCCCGCTCCCGCCCCCGCCCCCGTCCTCGTCCCCGCAGCGCCT
GGGGCCGGGTTCGGTGTTCCCCAAGCCGCCTCTCCTGCGCCCGCCCCCAA
AGTTCCGCGCAATCGACCCGCGAAGAAGCCTCAGCCCAAGGCTCTGCCTC
GCGGGAACAATCTGCTCGTTGTGGGGCTAGGGAATCCGGGAGAGAGATTC
AAGATGACCCGGCACAATATCGGGTTTTTGGTGGCGGAAGAGTTGGCGCA
TCGATACGGGGCGACTTTCAAGATTAAATCGGCCTTTATGGTGAGTGACT
GATTGATTTGGTTGGTCGTATTTTTTCTTCGAGGGGAGGGGGATTGAGGT
TAGGGTAGCTGTGTGCACTTACGATCAAAACTTAGATGAAACCGGGCGGA
GTTTCGCGGGATCTGTGTTCCTTGCTTGCCGTTGTGGGTTTGTGTTATTT
TTTGTGTTTTGGATGCCTCAAGTCGGACATTTTTGGGGAGTTTTCGATAT
TATTCTGGGGGTTGTCTGTAGCAGGAGAGTGGTGGTACGCATTTGTAGAT
ACGGCACGGTCTTGCGGTACGTGGTTTTCTCAGCGCTTGTTCTTTGTCGC
CTTGCTTGCCGGTACTCGTTTTTCAGCGAAGGGCTCCTCCCTGAATTGTG
TTGACTGTTGCACTGCCGGCACAGCATTTTCTGTCGTGAAGCACTGCTAG
CTACCTGGCAGTGTTTCCGGTTGCGTCGGAACACCGAGGAGTAATCGTTG
AGTTGAACATGGCTGAATCCTTCGTAAATTGCTACATGTTTCATGTTTTT
TTTTTTGTATGTGTCGTCTGTGACTAATGTGAAGTGCGAGAATAGACTAG
TATCAAGGGTTCAGGTCAGTGGCCTTCAGTCCTTTTGTGCCTGCCCGGCG
CTTCATATCGCTTTTACCCACGAGAACAGAATCAGGACCGGTTCGTGGTC
GGTTCCTTATGGCTCTAGCCTGTTAGTGGCGGGTCACCATCTGTCGAATT
TCGAGTATCAGGCGAATCGCTTCGCTGTGCACGTAGAGGGTTGGTTCTGT
TTGTCGGATTTTTCACGGGTCATGCAAAAGTATTTTGTATAGCTCTCATT
GTGGCTTTACTTAGACAGGGCATCATCTTGTGTGCTGTTCCCCGTAACAT
GAAAGAAAAAAATCAACGCGATTGCCTCGAACACTTGTATGGTCTATGCT
CTTTAGAGTCAGACCGAAAGTCTCTTGCGTTGTCGGACAGATGTCGCCTA
GATGTGTGAGGTCGCGTAAATAGACGTGCTCTTTCGACAGTGCAGGGATT
TGCTTCGCGAGAACAAGAAGGTTTGTTTGAAGTACGTTCGTATACTACGT
GATACACTTTGGAGTATGGCCTCTATCGTACGCCGCAAAATTTGCTAATG
GCGCCTCGCAACTGCTGCCTCTTGTCTCGTGTGCCTTCTGTCTGATGTGC
CTTGCGTGTCTCGTGTGTTTTGCCGCTGAAAACCAAAAGGGGGAGTACTG
CTCAGTGTCGATCAAGGGGAAGTCCGTGGGCATCCTGCGACCTATCACAT
TCATGAATCTCAGTGGACAATCTGCTCGAAAGGTAGGTTGTAACATGATT
CGATTAGTTATCTTGACGCCGGCGTTGTGGGGGGAGGGGCGGGGGGGGGG
ATATGGGTTACTAAGCTGAAATGTTCATACTTCCTCTGTGCCGTAGGTAA
AGTCGGTTGTGTTTTTAGCAGATTATATCTCCAGATCTGAGGCTGTTCAG
AGGCTGCGTTTGGAATCGTTGAAAAGCTGAAACCTGGATGACTCATATGA
GCTATTCCGAAGTGCATTTTGATTTGTGCCTAAGGATGAATGGCGCCGCT
CAAAATTCGGCTAATTTTGACTATTTGTACTTTTCTCTCGATTTTTCCGT
TTTTCCGTTGGGAAAATACGAAAAGGAGCAAAAGGGTTGCCCTTTTTTCG
GCCGACATACGTTTTTTGCGCCGCGCGCGCTCCCAATGGATTTCACCAAT
TTCGTGAAATTTTGAGGATCAATCCGCCAAAACATGTAGGGTTGGAGCTT
ATAATACAAGGAAAAAGCGTAGATGGTTACGTGCCTCTGTAAACTTTGAC
CCACTTTAAAGAGTATAATGAGTCTGTTGTACCCATGGTGATGTTAAGCA
ATTGAATTCAAACTTTAGTTTTGTGCTCTTATGAGCAATATTTATATCAT
CGGGGGGGGGGGTAATGCAATCATCAGTGCATGTGTTTGGAGTAGGAGTA
CTGTACCGAGAAACTAAAATGGATAGCAGGTTTTCAAAATGTTATATGTT
CATCTATAAGCCTGACGAATACAAAGCATAGCCTGCCACAATGTGCTCGT
TGTTTGTTAGGAGGTTTATGCAGCTTATAGACAACAATCTCTTCGTTTCA
ACCATTGTATGTTTTTATTCCAAAAATACAGGTACAGTAAAAGTTACCCA
AGACAGGCACACGAAAACGTGGGCCCAGTGTTGTTATTTACCATCGGTCC
TCTCATGAGCAAGAAATCCAGAGTAGAGTGTGATAGGAAAGAAACATGAG
ATTAATGGAGAATGACCGATCGGCAGCTTCATACTCGAGATGTGCGTTTT
TTTTTTCTTTTGTGCGCGCTGAGACTGCATGTGCAACCAAAAATGAAAAA
TCGAAGATCATACCAGTATCTTGGACTGAAAGGGGGTGTTCCCCACACTA
TAATGAAGGGATATACGGGCTCTGGAGTAAGACCAAATAAGCGGCGAGTC
ACTTCAGAGTGATTGATGAACAGCAAAATAGGGTGTTGCTCGCGGTTCGC
CGCGACTCATTCAGGGAAGGATAGTCGACATTGGTACTCTTACTATAGGT
CCATAGATATGACCCCTAGCTGCAGATGATACTGATGATTGGAAATGACC
TAGCTCCCTCGTATCGACAGGTGACTAAGGAGAATTTTTGGGTCAAATTA
TTATTTTTTTCGTTTTTGTTGGCCCCCGTTACGTGGCTTTGGGGAAGATA
CATGTAGAATATTTGCTGAAATAAACGCCTGTTGATCAGTTTCGACTTGA
TTCTGTATGGCTAATGGTGACCTCCAGGTCCCGAACTTCAGTCCACGAAA
CAAAATGCGTTTAAAAAAACAAAATCGAAATTTTTTCGCCGGCTTTTACG
AATAAGGATAGGTTGTGATAAGTATATCGTCTTGTAGAGAAACGTTGCAC
ACGTTTGACGGATCATGATCCGTCCAAATCACTGAAAACATAACTTGCCC
GCCCCGTTGGTCCGAGAAAAAAAAAGAACGTGAAAACGGATCAGAGAAGT
CTAAGGAAACGTTTTGCGCTACTCCGCGTGCTCGGCGTCCAGCGCTGTAG
GGAGCGAAGCTAGGAACAAGACCTAAGGAGCCGCGAGTTATATACGGATT
ATATACACTAATAACAAGTAATTGTTCAGATGGATTGTGAATTGTGGGAC
GTTTTCTGAAAGTTTGGTCAGGCGGACAGGGGTCCCGTACGTGCAGCTCC
CTCTGAGCCATACAGTACCGAATCGAAATTTGCAAACAGATACCATTTGT
TTTTTCAACACCCTTTCGCTATTTGCTAATTTCCTTGCGCCTCCAAGTAC
CTGAGTTCATCGATATTGCAAGTTTAACAGTATAACAAACACTAAATATA
TTCACGTTTCAAACAACGATTGGATGGAAACAGCAAAACCTATCGCACGT
ACCATATGTAAGTAACTTTTTTTTCTTTCTTTTTTTTTAGCCCAACACCA
GATAGCACTACTTACAAAAGCGTTATGTTCTAAATGTATTAATCGGATTC
CGATCTTTTTTGTTTATTTTGCACCGCAAAATGTTGGTTCAGGTGATCGA
GTACTTCAAGCTGCCGATTAATGCAGCCCTCGTTCTCTCAGACGAGATAG
CACTAGACTTCGGACAGTTGAGGGTCAGGTCGAAGGGAAGTCCTGGAGGC
CACAATGGCCTGAAAAGCATCGAGGCGCAGCTCAAGACGAAGGAGTATAG
CCGGTTGAAGATAGGCGTTGGAGGTGAACCGTTGGCTTCGCGACGCAACC
CAAACGGTATTCGGTATTTCGGGAATAACACGATGGCCACTTGGACTTCG
ATAAAAAAAACACACGCTGAGATGTTTTTCCCGAGGAGTGTAGCTTTATC
GTTATACTTCTAGAATACTGTTTTCCTCCGTGGTAACCGTTTTATACGCG
ATTTTAAAAAACAAAAAAAGTCAACCGAGTAAAAATAACGAGAATAGCCC
TGGTGACTATGATAAAATTCAACTCGTTTTCCGATCCCATTTGCGATTTG
CCCCCCTTAAATTCGAAACCAAATCCGGTGACAAGAGGTGCTAATGAAGG
CTCACACGCGAATCTGATAACACGGGAAACAGAGAAGAGACAGATGCTTT
GAGATTAACTCGCGATATCTGATATTATGTTGTCATCTTCTATTCAAATG
TTGAGTTAAGCACGTGTTAATTTTTTTTATCCATGTATAGTAATTTTATG
TACCCCCGATACACTTCAGGTATTTTTTTGTTTTCAACACCGTGTCTGCT
CTATCCTCCGTTTTTTTGTTAGCCAGGTGGGGGGTTCGGCCGTGTCCGTG
TTCCGAAAGAAAAAAACGAACGTTCGAAATAGACACCGCAAATAAAGTCG
ACGTTTTGATTATAACACTGTAGCATTGTGAGCTGATATTACCCGGGCGG
TATTGTAACGAGCCTTTTAAGGTACTTGAAATATTACAATATTTTATCCT
TCATACATCCATGTGTGTGCGTTTCTCCTGTCCTGATTTTACACGTCTGT
TGTTGTATATCAGGGGCCAGCGGGCAACCTTTGTCTGATCACGTGATGGG
AGATTTTTCCAAGGCGGAGAAAAAAGAGCTGGATAGCCTTGTCACCGAAG
CCTGCGATGCGGTGGAGCATTGGATAGAAGAAGAGGATATTGAAAAAGTC
ATGGGTCGATGGAACTCCCGATCTCGGTAGATGACAATCAGTAGTCCTGT
TAGGAGTAAAGATGATGACCGCACAAGATAATGTGTTGAGAGTCTACATT
TATATACAGCGCCCATGGTTACTGCTGTATCTCGAGAGAGGGCATTTTTT
TTATCCATGCATGTCTTGTCCCTGCGCCTCATTCGATTTTTTTGGTCTAG
GTTGGACGCTGGCAATTGCGTAGTGGATAAAACAGCGGCGGCAAGGGTTG
GAAGAGTGCAACGAGGCATGTAAAATTTTTTGGATGGTATTTTTTGTAGT
AACAAAGAGTTTATTAAGTTGCAGAGTTGTTGAAAAAGGACGAAGGTGTG
GAGAGGTGCAGGAATAATTCTCCGATCATTGAAGATGCAATCGTTCTGTG
TTTTTTGCTCAGTCATTGTAGCTAGATGAGACTAGAATTCGACGGGATAG
AGGGGGAGAGTAGCCTGTGATAAAGAGAAAGGAAGAGGGCTCCCGCACTT
CCATTGCTGGACAAATCTTTTGAAGAGAGAAGCATGATTTCAGCCGTGCT
AAACGTGGGTATGTCTTCCCCCCCCCCCTCCCTCTGTTTTTTAAGCTTTC
TCTTTTTTCTTCGTTGTTCCGCTTACACGGGAAAAAAATGGAAATAGGAT
AAAGGAACGCTGTACGTGAAAGTGATTCTTTTTCACTTTTGAAATTTTGG
AAAGTTCGAGGTGAAGAAAAACAAGAGGGAAAAAGCACCAATATTTAGAA
AGGGCTCTTAGCCTTTGTTTTCTTGCTTGCCGAGTAAAGTCATCATCCAT
GGCCATGACGTCACGTCGTGAGTGTTGGGTAATTTTGAAGAACCAATGTC
GTCATGCCGGAACGTCCTTTCACATTTTTTTATTATCGATGATTACGTGT
GTAATCTTTCGAAGTGAGAGAGTGGATTGACGGAAACGCTTTTGGCTGGA
AGAGTGATATGTCATTGATAGCTTGGAAGCAGCGGAAAGGTTTTTGCCTC
AGCCTGCCGGGGGTTAAAAAAAAAAAAATGTCATTGATAGCTATGTCGTC
ACTTCTCAAGAAAGGTAGTTGTTACTTCGTACGAACGTTGACGTGTTGAA
TTCACAGGAGAGGTGGTGGCCCAAAAAATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6685:978..8308+

>mRNA_H-paniculata_contig6685.14573.1 ID=mRNA_H-paniculata_contig6685.14573.1|Name=mRNA_H-paniculata_contig6685.14573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig6685:978..8308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCGGCACAATATCGGGTTTTTGGTGGCGGAAGAGTTGGCGCATCG
ATACGGGGCGACTTTCAAGATTAAATCGGCCTTTATGATGACCCGGCACA
ATATCGGGTTTTTGGTGGCGGAAGAGTTGGCGCATCGATACGGGGCGACT
TTCAAGATTAAATCGGCCTTTATGGGGGAGTACTGCTCAGTGTCGATCAA
GGGGAAGTCCGTGGGCATCCTGCGACCTATCACATTCATGAATCTCAGTG
GACAATCTGCTCGAAAGGGGGAGTACTGCTCAGTGTCGATCAAGGGGAAG
TCCGTGGGCATCCTGCGACCTATCACATTCATGAATCTCAGTGGACAATC
TGCTCGAAAGGTGATCGAGTACTTCAAGCTGCCGATTAATGCAGCCCTCG
TTCTCTCAGACGAGATAGCACTAGACTTCGGACAGTTGAGGGTCAGGTCG
AAGGGAAGTCCTGGAGGCCACAATGGCCTGAAAAGCATCGAGGCGCAGCT
CAAGACGAAGGAGTATAGCCGGTTGAAGATAGGCGTTGGAGGTGATCGAG
TACTTCAAGCTGCCGATTAATGCAGCCCTCGTTCTCTCAGACGAGATAGC
ACTAGACTTCGGACAGTTGAGGGTCAGGTCGAAGGGAAGTCCTGGAGGCC
ACAATGGCCTGAAAAGCATCGAGGCGCAGCTCAAGACGAAGGAGTATAGC
CGGTTGAAGATAGGCGTTGGAGGGGCCAGCGGGCAACCTTTGTCTGATCA
CGTGATGGGAGATTTTTCCAAGGCGGAGAAAAAAGAGCTGGATAGCCTTG
TCACCGAAGCCTGCGATGCGGTGGAGCATTGGATAGAAGAAGAGGATATT
GAAAAAGTCATGGGTCGATGGAACTCCCGATCTCGGTAGGGGCCAGCGGG
CAACCTTTGTCTGATCACGTGATGGGAGATTTTTCCAAGGCGGAGAAAAA
AGAGCTGGATAGCCTTGTCACCGAAGCCTGCGATGCGGTGGAGCATTGGA
TAGAAGAAGAGGATATTGAAAAAGTCATGGGTCGATGGAACTCCCGATCT
CGGTAG
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