mRNA_H-paniculata_contig6662.14548.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6662.14548.1
Unique NamemRNA_H-paniculata_contig6662.14548.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6662.14548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6662contigH-paniculata_contig6662:5027..5379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.126525-UTR-H-paniculata_contig6662:5026..50521622930788.126525-UTR-H-paniculata_contig6662:5026..5052Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6662 5027..5052 +
1691481452.4677434-UTR-H-paniculata_contig6662:5026..50521691481452.4677434-UTR-H-paniculata_contig6662:5026..5052Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6662 5027..5052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.1501532-CDS-H-paniculata_contig6662:5052..53791622930788.1501532-CDS-H-paniculata_contig6662:5052..5379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6662 5053..5379 +
1691481452.4783764-CDS-H-paniculata_contig6662:5052..53791691481452.4783764-CDS-H-paniculata_contig6662:5052..5379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6662 5053..5379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6662.14548.1prot_H-paniculata_contig6662.14548.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6662 5053..5379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6662.14548.1

>prot_H-paniculata_contig6662.14548.1 ID=prot_H-paniculata_contig6662.14548.1|Name=mRNA_H-paniculata_contig6662.14548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MAPTVAAPAAARPADMSVSPVFTSTSGPDKSTSPEGMSTSPDTDGMSTST
PPDGNDTPPDTCGSEISPEGKDTSPDTAGIETSPEADGKDTFPDTCGSEI
SPEGKDTSP
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mRNA from alignment at H-paniculata_contig6662:5027..5379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6662.14548.1 ID=mRNA_H-paniculata_contig6662.14548.1|Name=mRNA_H-paniculata_contig6662.14548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=353bp|location=Sequence derived from alignment at H-paniculata_contig6662:5027..5379+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACCAAACTGCCTAGCCCCACGCCGATGGCGCCGACTGTAGCCGCGCCT
GCGGCCGCGAGACCCGCCGATATGTCCGTGTCGCCTGTCTTCACGTCCAC
GTCCGGCCCTGACAAATCCACGTCGCCGGAAGGCATGTCCACTTCGCCTG
ATACCGACGGGATGTCCACGTCTACGCCACCGGATGGTAACGATACACCA
CCCGACACCTGCGGAAGCGAAATATCTCCCGAAGGTAAGGACACGTCTCC
TGATACTGCCGGCATCGAAACGTCCCCGGAAGCCGACGGTAAAGATACAT
TTCCCGACACCTGCGGAAGCGAAATATCTCCCGAAGGTAAGGACACGTCG
CCG
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Coding sequence (CDS) from alignment at H-paniculata_contig6662:5027..5379+

>mRNA_H-paniculata_contig6662.14548.1 ID=mRNA_H-paniculata_contig6662.14548.1|Name=mRNA_H-paniculata_contig6662.14548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig6662:5027..5379+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCCGACTGTAGCCGCGCCTGCGGCCGCGAGACCCGCCGATATGTC
CGTGTCGCCTGTCTTCACGTCCACGTCCGGCCCTGACAAATCCACGTCGC
CGGAAGGCATGTCCACTTCGCCTGATACCGACGGGATGTCCACGTCTACG
CCACCGGATGGTAACGATACACCACCCGACACCTGCGGAAGCGAAATATC
TCCCGAAGGTAAGGACACGTCTCCTGATACTGCCGGCATCGAAACGTCCC
CGGAAGCCGACGGTAAAGATACATTTCCCGACACCTGCGGAAGCGAAATA
TCTCCCGAAGGTAAGGACACGTCGCCGATGGCGCCGACTGTAGCCGCGCC
TGCGGCCGCGAGACCCGCCGATATGTCCGTGTCGCCTGTCTTCACGTCCA
CGTCCGGCCCTGACAAATCCACGTCGCCGGAAGGCATGTCCACTTCGCCT
GATACCGACGGGATGTCCACGTCTACGCCACCGGATGGTAACGATACACC
ACCCGACACCTGCGGAAGCGAAATATCTCCCGAAGGTAAGGACACGTCTC
CTGATACTGCCGGCATCGAAACGTCCCCGGAAGCCGACGGTAAAGATACA
TTTCCCGACACCTGCGGAAGCGAAATATCTCCCGAAGGTAAGGACACGTC
GCCG
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