mRNA_H-paniculata_contig6659.14541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6659.14541.1
Unique NamemRNA_H-paniculata_contig6659.14541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: A0A6H5K2B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B1_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.100e-49
Identity = 91/130 (70.00%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    1 DGDRVIHLAVENGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFKVTREEEAFLLLEGEAEEKIRWRLKREEEKRLELANAVGAREADEARLKAMAAYGQWVPYTDKMGRGIFYYNK 390
            DGDR IHLAV+NGD E+V LLVD+ ADINS NY+++TPLAVACK QDWQMVN LLD K              AE+KIRWRLKREEE+RL+LA AVG READ ARLKA+ AYGQWVPY DKM  GIFYYNK
Sbjct:  300 DGDRAIHLAVQNGDHEIVDLLVDYQADINSPNYRRVTPLAVACKRQDWQMVNHLLDKK--------------AEKKIRWRLKREEEERLKLARAVGDREADAARLKALKAYGQWVPYADKMDGGIFYYNK 415          
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: D7G1C5_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C5_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.350e-44
Identity = 86/139 (61.87%), Postives = 94/139 (67.63%), Query Frame = 1
Query:    1 DGDRVIHLAVENGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFKVTREEEAFLLLEGEAEEKIRWRLKREEEKRLELANAVGAREADEARLKAMAAYGQWVPYTDKMGRGIFYYNKVSRESRREA 417
            DGDR IHLAV+NGD E+V LLVD+ ADINS NY+++TPLAVACK QDWQMVN LLD K                                LA AVG READ ARLKA+ AYGQWVPYTDKMG GIFYYNKVSRESRR+A
Sbjct:  254 DGDRAIHLAVQNGDHEIVNLLVDYQADINSPNYRRVTPLAVACKRQDWQMVNHLLDKK--------------------------------LARAVGDREADAARLKALKAYGQWVPYTDKMGGGIFYYNKVSRESRRQA 360          
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: A0A835Z5D7_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5D7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.240e-27
Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 1
Query:    1 DGDRVIHLAVE-NGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFKVTREEEAFLLLEGEAEEKIRWRLKREEEKRLELANAVGAREADEARLK-----------------------AMAAYGQWVPYTDKMGRGIFYYNKVSRESRRE 414
            DG R IH A+      E ++LL DH AD+N+ +Y  +TPL +AC LQD   V+ LLD KV RE  A  LL+G+  ++IR R+ +E+ +R  LA    + +A +A+ +                       A  AYGQWVPY DK GRGIFYYNKVSRE+R E
Sbjct:  416 DGTRAIHTAIRCRCGREFLELLADHKADMNAPDYSGVTPLQLACSLQDHAAVSALLDLKVVRESPALALLKGDDGDRIRARIAQEDAERARLAQDALSAQASDAQARXXXXXXXXXXXXXXXXXXXXXXXAHRAYGQWVPYIDKQGRGIFYYNKVSRETRWE 577          
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: A0A8J2X0P4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0P4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.840e-22
Identity = 60/139 (43.17%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 DGDRVIHLAVENGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFKVTREEEAFLLLEGEAEEKIRWRLKREEEKRLELANAVGAREADEARLKAM-AAYGQWVPYTDKMGRGIFYYNKVSRESRRE 414
            DG+  +H A   G  E V+ L++ GA++N  +Y + TPL  AC+ Q   +V+ LLD+   R   AF +LEGEA  +I  RL  E+ K++E    +   EA     K   +A G WVPY DK GRGIFYYN+VSR S+ E
Sbjct:  303 DGETALHYAALRGSMEAVEALLEFGANVNCESYARDTPLKRACRQQRVDLVHKLLDYDCNRRPSAFAILEGEALMEITLRLDEEKRKKVEEYEKLKRLEAAGKNKKGKKSAIGAWVPYRDKRGRGIFYYNRVSRVSQFE 441          
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: F0Y8C8_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8C8_AURAN)

HSP 1 Score: 100 bits (249), Expect = 6.680e-22
Identity = 61/143 (42.66%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 DGDRVIHLAVENGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFKVTREEEAFLLLEGEAEEKIRWRLKREEEKRLE----LANAVGAREADEARLKAMAAYGQWVPYTDKMGRGIFYYNKVSRESRREA 417
            DG+  +      GD E V+ L + GA++N+ +Y K +PL  AC+ QD  M++ LLDF  TR   AF LLEG+A++ I  RL+ E  ++L     + NA  + +    R    +A G+W PY DK GRGIFYYN+VSR S+ EA
Sbjct: 1387 DGETALIYGALTGDVETVECLCEFGANVNAESYSKDSPLKRACRNQDVPMIHKLLDFAATRRPSAFELLEGDAKQVILDRLEAERLEKLAEFEAIKNAKASGKKGGGRGAKASAVGEWRPYRDKRGRGIFYYNRVSRVSQFEA 1529          
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: A0A812SU87_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SU87_SYMMI)

HSP 1 Score: 63.2 bits (152), Expect = 1.500e-9
Identity = 46/132 (34.85%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    1 DGDRVIHLAVENGDS--EVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFKVTREEEAFLLLEGEAEEKIRWRLKREEEKRLELANAV----------GAREADEARLKAMAAYGQWVPYTDK 360
            DG   + LA E  +   E+ ++L+   AD NS N KK +PL +ACK Q+ ++V+LLLD +V R   AF LL+G+A  ++  RL+ EE                    G  +   +  K  + +GQWV Y DK
Sbjct:   58 DGSTALILAAELNEFGIEMSRMLLQKKADPNSENRKKRSPLTIACKAQNMELVHLLLDNQVQRRGSAFALLKGDASLQLHQRLQEEEXXXXXXXXXXXXXXKRTAEDGVVDILSSGYKKKSPWGQWVQYKDK 189          
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: UPI0009E4DAF4 (probable E3 ubiquitin-protein ligase XBOS33 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4DAF4)

HSP 1 Score: 54.7 bits (130), Expect = 5.490e-6
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   16 IHLAVENGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFK 174
            +H A   G  E+V LL++ GAD+NS NY  +TPL  AC+   W++V +LL F+
Sbjct:   51 LHYAAAKGHVEIVTLLLEKGADVNSRNYSGLTPLMQACRYGHWEIVQVLLLFR 103          
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: A0A0D6QYF7_ARACU (RING-type domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QYF7_ARACU)

HSP 1 Score: 54.7 bits (130), Expect = 5.830e-6
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   16 IHLAVENGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFK--VTR 183
            +H A   G +E+V LL++HGAD+NS NY   T L  AC+   W++V  LL FK  VTR
Sbjct:   49 LHFAASKGHAEIVTLLLEHGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFKGNVTR 106          
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: A0A3S3MUX7_9MAGN (Zinc finger protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MUX7_9MAGN)

HSP 1 Score: 52.8 bits (125), Expect = 2.700e-5
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   16 IHLAVENGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFK--VTR 183
            +H A   G +E+V LL++HGAD+NS NY   T L  AC+   W++V  LL F+  VTR
Sbjct:   49 LHFAAAKGHNEIVMLLLEHGADVNSRNYCGQTALMHACRYGHWEVVQTLLLFRSNVTR 106          
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Match: A0A396JU57_MEDTR (Putative ankyrin repeat-containing domain-containing protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JU57_MEDTR)

HSP 1 Score: 50.4 bits (119), Expect = 3.350e-5
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   16 IHLAVENGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQMVNLLLDFK 174
            +H A   G +E+V LL+++GAD+NS NY   T L  AC+   W++V  LL F+
Sbjct:   49 LHFASAKGHNEIVALLLENGADVNSRNYSGQTALMQACRYGHWEVVQTLLLFR 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6659.14541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2B1_9PHAE2.100e-4970.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1C5_ECTSI2.350e-4461.87Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A835Z5D7_9STRA5.240e-2743.21Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A8J2X0P4_9STRA3.840e-2243.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y8C8_AURAN6.680e-2242.66JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
A0A812SU87_SYMMI1.500e-934.85Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
UPI0009E4DAF45.490e-645.28probable E3 ubiquitin-protein ligase XBOS33 n=1 Ta... [more]
A0A0D6QYF7_ARACU5.830e-648.28RING-type domain-containing protein n=2 Tax=Arauca... [more]
A0A3S3MUX7_9MAGN2.700e-546.55Zinc finger protein n=1 Tax=Cinnamomum micranthum ... [more]
A0A396JU57_MEDTR3.350e-543.40Putative ankyrin repeat-containing domain-containi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6659contigH-paniculata_contig6659:9550..10682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue3.1e-37
Seed eggNOG ortholog2880.D7G1C5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGsCOG0666@1,KOG0510@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-00_005590.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930787.2516797-CDS-H-paniculata_contig6659:9549..97921622930787.2516797-CDS-H-paniculata_contig6659:9549..9792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6659 9550..9792 -
1691481452.046011-CDS-H-paniculata_contig6659:9549..97921691481452.046011-CDS-H-paniculata_contig6659:9549..9792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6659 9550..9792 -
1622930787.2660844-CDS-H-paniculata_contig6659:10508..106821622930787.2660844-CDS-H-paniculata_contig6659:10508..10682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6659 10509..10682 -
1691481452.0596976-CDS-H-paniculata_contig6659:10508..106821691481452.0596976-CDS-H-paniculata_contig6659:10508..10682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6659 10509..10682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6659.14541.1prot_H-paniculata_contig6659.14541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6659 9550..10682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6659.14541.1

>prot_H-paniculata_contig6659.14541.1 ID=prot_H-paniculata_contig6659.14541.1|Name=mRNA_H-paniculata_contig6659.14541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
DGDRVIHLAVENGDSEVVKLLVDHGADINSSNYKKITPLAVACKLQDWQM
VNLLLDFKVTREEEAFLLLEGEAEEKIRWRLKREEEKRLELANAVGAREA
DEARLKAMAAYGQWVPYTDKMGRGIFYYNKVSRESRREA
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mRNA from alignment at H-paniculata_contig6659:9550..10682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6659.14541.1 ID=mRNA_H-paniculata_contig6659.14541.1|Name=mRNA_H-paniculata_contig6659.14541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1133bp|location=Sequence derived from alignment at H-paniculata_contig6659:9550..10682- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGGGATCGCGTCATCCACCTGGCAGTGGAAAACGGCGATTCGGAGGT GGTGAAGCTCCTGGTAGACCACGGGGCAGATATCAATTCGTCCAACTACA AGAAGATTACGCCTCTCGCTGTGGCCTGCAAGCTCCAAGATTGGCAGATG GTCAACTTATTACTGGATTTCAAAGTACGCTGCATCTCTTCGGACCGACT TTTAATGTTGGATTGACAAACAATAATAAATCGTCTGTCGCTCTGAATGA ATGCGTTCGTTCGCGGTCGCGAAAACAGGGTTTAAAGGCAAACTGTCAGA CGACGCCGCGCTGTGAGTTTTGTGAGACATTGATAATGTCCGATTTATAT TTTCTTTGTGCAGATTTGGAATTCTTTTATGTTTTTGGGTTGGACCTCAA ATTTTCACGGCAATCCACGAATCCCACAGCATGCGCGAGCGAGTAAAAAA AGAGAAATGGCCCAAAATCCATCACAAAATTGCGCATTTGGGATCCTAGC CATACTTGGCACAGGGTCGTGCCAGCTCGCCATCAGGGAATTTCGAGAGA ACCGGCTTAATTGCCGTTGTGATGTCGATGGCAAGCGCATATCTCCTTCT GAAAGGCAACTCCTTGCCTCTGCTGCGTGGTGGGTTCGCCGGGGCGGGTT CCATCGTGATATTATGTGCTTGTCTTGCGCTTAAAAAAATTGGCCGGGAC CGTAAAAAAAGGGTAAAATAGGGGTGATTTATGCTCATCTTTTGTTTCCG AAATCTTTGAAGTTATTATTTTTGGTTGTATTGAGTCGAAATCTTCGTAG AATTGTCTTTCGGTCGGTACCACAAGCTCCGAGGGAATCGTTGTAGAGCT CGAGATATGGCGCTCCTTTCCCCCTCTCAACACGTAAAAGGTCACCCGCG AAGAAGAAGCATTCTTGTTACTCGAAGGAGAGGCGGAGGAAAAAATCCGA TGGCGTTTAAAGCGAGAGGAAGAGAAACGACTTGAACTTGCAAACGCAGT CGGGGCGCGTGAGGCAGACGAGGCAAGGCTCAAGGCGATGGCAGCCTACG GGCAGTGGGTTCCTTACACTGACAAGATGGGGCGAGGAATTTTCTATTAC AACAAAGTTTCGAGAGAATCCCGGCGAGAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig6659:9550..10682-

>mRNA_H-paniculata_contig6659.14541.1 ID=mRNA_H-paniculata_contig6659.14541.1|Name=mRNA_H-paniculata_contig6659.14541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig6659:9550..10682- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGGGATCGCGTCATCCACCTGGCAGTGGAAAACGGCGATTCGGAGGT
GGTGAAGCTCCTGGTAGACCACGGGGCAGATATCAATTCGTCCAACTACA
AGAAGATTACGCCTCTCGCTGTGGCCTGCAAGCTCCAAGATTGGCAGATG
GTCAACTTATTACTGGATTTCAAAGACGGGGATCGCGTCATCCACCTGGC
AGTGGAAAACGGCGATTCGGAGGTGGTGAAGCTCCTGGTAGACCACGGGG
CAGATATCAATTCGTCCAACTACAAGAAGATTACGCCTCTCGCTGTGGCC
TGCAAGCTCCAAGATTGGCAGATGGTCAACTTATTACTGGATTTCAAAGT
CACCCGCGAAGAAGAAGCATTCTTGTTACTCGAAGGAGAGGCGGAGGAAA
AAATCCGATGGCGTTTAAAGCGAGAGGAAGAGAAACGACTTGAACTTGCA
AACGCAGTCGGGGCGCGTGAGGCAGACGAGGCAAGGCTCAAGGCGATGGC
AGCCTACGGGCAGTGGGTTCCTTACACTGACAAGATGGGGCGAGGAATTT
TCTATTACAACAAAGTTTCGAGAGAATCCCGGCGAGAGGCGGTCACCCGC
GAAGAAGAAGCATTCTTGTTACTCGAAGGAGAGGCGGAGGAAAAAATCCG
ATGGCGTTTAAAGCGAGAGGAAGAGAAACGACTTGAACTTGCAAACGCAG
TCGGGGCGCGTGAGGCAGACGAGGCAAGGCTCAAGGCGATGGCAGCCTAC
GGGCAGTGGGTTCCTTACACTGACAAGATGGGGCGAGGAATTTTCTATTA
CAACAAAGTTTCGAGAGAATCCCGGCGAGAGGCG
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