mRNA_H-paniculata_contig660.14476.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig660.14476.1
Unique NamemRNA_H-paniculata_contig660.14476.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5K4L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.520e-18
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  209 RKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            R  R G+V  A  G  ++E  E++ N  AERV GKK++RCG SVEWW DE +E I ERRE   R        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:   58 RGSRTGDVHAA--GDRVIEGWESIVNATAERVVGKKVVRCGVSVEWWDDELKEEIGERREVFKRYLSGASEESSEKYRAKRKQVKGLVRKKKKCIWDEVVQKAN 159
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BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5KIF2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.170e-17
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  206 VRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            +R    G+V   + G  ++E  E++ N  AERV GKK++RCG SV+WW DE +E I ERRE   +        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:  223 LRSVEDGQVDVQAAGDRVIEGWESIVNATAERVVGKKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEASEESWEKYRAKRKQVKGLVKKKKKCIWDEVVQKAN 327
[Close]
BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5K6E3_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.210e-17
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  206 VRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            +R    G+V   + G  ++E  E++ N  AERV GKK++RCG SV+WW DE +E I ERRE   +        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:  447 LRSVEDGQVDVQAAGDRVIEGWESIVNATAERVVGKKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEASEESWEKYRAKRKQVKGLVKKKKKCIWDEVVQKAN 551
[Close]
BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5JZL9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.300e-17
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  206 VRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            +R    G+V   + G  ++E  E++ N  AERV GKK++RCG SV+WW DE +E I ERRE   +        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:   84 LRSVEDGQVDVQAAGDRVIEGWESIVNATAERVVGKKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEASEESWEKYRAKRKQVKGLVKKKKKCIWDEVVQKAN 188
[Close]
BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.370e-17
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  206 VRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            +R    G+V   + G  ++E  E++ N  AERV GKK++RCG SV+WW DE +E I ERRE   +        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:  690 LRSVEDGQVDVQAAGDRVIEGWESIVNATAERVVGKKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEASEESWEKYRAKRKQVKGLVKKKKKCIWDEVVQKAN 794
[Close]
BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5JXG5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.170e-17
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  206 VRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            +R    G+V   + G  ++E  E++ N  AERV G+K++RCG SV+WW DE +E I ERRE   +        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:  150 LRSVEDGQVDVQTAGDRVIEGWESIVNATAERVVGRKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEASEESWEKYRAKRKQVKGLVKKKKKCIWDEVVQKAN 254
[Close]
BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5JS68_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS68_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.250e-17
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  206 VRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            +R    G+V   + G  ++E  E++ N  AERV G+K++RCG SV+WW DE +E I ERRE   +        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:   61 LRSVEDGQVDVQTAGDRVIEGWESIVNATAERVVGRKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEASEESWEKYRAKRKQVKGLVKKKKKCIWDEVVQKAN 165
[Close]
BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5KL47_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL47_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.290e-17
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  206 VRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            +R    G+V   + G  ++E  E++ N  AERV G+K++RCG SV+WW DE +E I ERRE   +        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:  107 LRSVEDGQVDVQTAGDRVIEGWESIVNATAERVVGRKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEASEESWEKYRAKRKQVKGLVRKKKKCIWDEVVQKAN 211
[Close]
BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5K6P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.340e-17
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  206 VRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            +R    G+V   + G  ++E  E++ N  AERV G+K++RCG SV+WW DE +E I ERRE   +        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:  527 LRSVEDGQVDVQTAGDRVIEGWESIVNATAERVVGRKVVRCGVSVKWWDDELKEEIGERREVFKQYLSEASEESWEKYRAKRKQVKGLVKKKKKCIWDEVVQKAN 631
[Close]
BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Match: A0A6H5JUS9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.170e-17
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  206 VRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSVEWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKESWDEVVQEVN 520
            +R    G+V   ++G   +E  E++ N  AERV G+K++RCG SV+WW DE  E I+ERRE   +        + E++  KRKQ +G+V  KKK  WDEVVQ+ N
Sbjct:  305 LRSVEDGQVDVQASGDRGIEGWESIVNATAERVVGRKVVRCGVSVKWWDDELEEEIRERREVFKQYLSEASEESWEKYRAKRKQVKGLVRKKKKCIWDEVVQKAN 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig660.14476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K4L3_9PHAE2.520e-1848.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIF2_9PHAE1.170e-1743.81Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K6E3_9PHAE1.210e-1743.81Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JZL9_9PHAE1.300e-1743.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5C9_9PHAE1.370e-1743.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JXG5_9PHAE3.170e-1742.86Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JS68_9PHAE3.250e-1742.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KL47_9PHAE3.290e-1742.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6P2_9PHAE3.340e-1742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS9_9PHAE6.170e-1742.86Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig660contigH-paniculata_contig660:7237..7798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-00_008530.2
Exons1
Model size562
Cds size372
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.3990076-UTR-H-paniculata_contig660:7236..74261622930778.3990076-UTR-H-paniculata_contig660:7236..7426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig660 7237..7426 +
1691481448.0878415-UTR-H-paniculata_contig660:7236..74261691481448.0878415-UTR-H-paniculata_contig660:7236..7426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig660 7237..7426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.4103997-CDS-H-paniculata_contig660:7426..77981622930778.4103997-CDS-H-paniculata_contig660:7426..7798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig660 7427..7798 +
1691481448.1000154-CDS-H-paniculata_contig660:7426..77981691481448.1000154-CDS-H-paniculata_contig660:7426..7798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig660 7427..7798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig660.14476.1prot_H-paniculata_contig660.14476.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig660 7427..7798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig660.14476.1

>prot_H-paniculata_contig660.14476.1 ID=prot_H-paniculata_contig660.14476.1|Name=mRNA_H-paniculata_contig660.14476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MVQGSVRKYRGGEVKRASTGHGLLEACENVGNVAAERVFGKKIIRCGTSV
EWWGDESREAIKERRETPTRNTGMTIGTNVEEFGFKRKQAQGIVIGKKKE
SWDEVVQEVNTFGRWRKVHVARD*
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mRNA from alignment at H-paniculata_contig660:7237..7798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig660.14476.1 ID=mRNA_H-paniculata_contig660.14476.1|Name=mRNA_H-paniculata_contig660.14476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=562bp|location=Sequence derived from alignment at H-paniculata_contig660:7237..7798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAAGGTCGACATGTTTGACGTGTTTGCATGTGATATCGGGGTAACATAG
TTCTGTCTAATATGGGCAGACATGAACGGGGATTGTGCAGTAGGACGGAC
TAAGAGGAAATTGTTGAGGTCGGGGGTAGAGCGCCTACAACAGAAGGCAA
GGCGTAAGGTATTCGTGAAGGAAACAATTGAAGGTGAAGAATGGTCCAGG
GCAGTGTGAGGAAGTATCGAGGAGGAGAAGTGAAGAGAGCGAGTACAGGA
CATGGGCTGTTGGAAGCTTGTGAAAACGTAGGAAATGTAGCGGCCGAGAG
AGTATTTGGCAAGAAGATCATTCGATGTGGTACGTCCGTCGAATGGTGGG
GTGATGAATCGAGAGAGGCAATAAAAGAAAGGAGAGAGACACCCACAAGA
AACACAGGAATGACAATCGGTACAAACGTGGAAGAGTTTGGATTCAAGAG
GAAACAAGCACAAGGCATAGTGATAGGGAAGAAAAAGGAGAGCTGGGATG
AAGTAGTGCAGGAGGTTAACACATTTGGAAGGTGGCGTAAAGTTCATGTG
GCAAGGGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig660:7237..7798+

>mRNA_H-paniculata_contig660.14476.1 ID=mRNA_H-paniculata_contig660.14476.1|Name=mRNA_H-paniculata_contig660.14476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig660:7237..7798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCAGGGCAGTGTGAGGAAGTATCGAGGAGGAGAAGTGAAGAGAGC
GAGTACAGGACATGGGCTGTTGGAAGCTTGTGAAAACGTAGGAAATGTAG
CGGCCGAGAGAGTATTTGGCAAGAAGATCATTCGATGTGGTACGTCCGTC
GAATGGTGGGGTGATGAATCGAGAGAGGCAATAAAAGAAAGGAGAGAGAC
ACCCACAAGAAACACAGGAATGACAATCGGTACAAACGTGGAAGAGTTTG
GATTCAAGAGGAAACAAGCACAAGGCATAGTGATAGGGAAGAAAAAGGAG
AGCTGGGATGAAGTAGTGCAGGAGGTTAACACATTTGGAAGGTGGCGTAA
AGTTCATGTGGCAAGGGATTAAATGGTCCAGGGCAGTGTGAGGAAGTATC
GAGGAGGAGAAGTGAAGAGAGCGAGTACAGGACATGGGCTGTTGGAAGCT
TGTGAAAACGTAGGAAATGTAGCGGCCGAGAGAGTATTTGGCAAGAAGAT
CATTCGATGTGGTACGTCCGTCGAATGGTGGGGTGATGAATCGAGAGAGG
CAATAAAAGAAAGGAGAGAGACACCCACAAGAAACACAGGAATGACAATC
GGTACAAACGTGGAAGAGTTTGGATTCAAGAGGAAACAAGCACAAGGCAT
AGTGATAGGGAAGAAAAAGGAGAGCTGGGATGAAGTAGTGCAGGAGGTTA
ACACATTTGGAAGGTGGCGTAAAGTTCATGTGGCAAGGGATTAA
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