mRNA_H-paniculata_contig65973.14469.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65973.14469.1
Unique NamemRNA_H-paniculata_contig65973.14469.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65973.14469.1 vs. uniprot
Match: A0A0H5BN93_9PHAE (Photosystem I (Fragment) n=1 Tax=Sporochnus bolleanus TaxID=461143 RepID=A0A0H5BN93_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.770e-8
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GKALYGLDLLLASKDSPGPAGLAGSEFRFPGWIEAIYSDKMIYFL 135
            GKA+YG DLLL+SKDSP  A +AGSE   PGWIEAI +DK   FL
Sbjct:   85 GKAIYGFDLLLSSKDSP--AKIAGSEIWLPGWIEAINNDKNDLFL 127
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BLAST of mRNA_H-paniculata_contig65973.14469.1 vs. uniprot
Match: A0A1Z4F594_9PHAE (Photosystem I (Fragment) n=38 Tax=Phaeophyceae TaxID=2870 RepID=A0A1Z4F594_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.910e-7
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GKALYGLDLLLASKDSPGPAGLAGSEFRFPGWIEAIYSDKMIYFL 135
            GKA+YG DLLL+SK+SP  A +AGSE   PGWIEAI +DK   FL
Sbjct:  454 GKAVYGFDLLLSSKESP--ASVAGSEIWLPGWIEAINNDKNDLFL 496
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BLAST of mRNA_H-paniculata_contig65973.14469.1 vs. uniprot
Match: A0A0R6MFW0_UNDPI (Photosystem I P700 chlorophyll a apoprotein A2 n=71 Tax=Stramenopiles TaxID=33634 RepID=A0A0R6MFW0_UNDPI)

HSP 1 Score: 55.5 bits (132), Expect = 3.950e-7
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GKALYGLDLLLASKDSPGPAGLAGSEFRFPGWIEAIYSDKMIYFL 135
            GKA+YG DLLL+SK+SP  A +AGSE   PGWIEAI +DK   FL
Sbjct:  468 GKAVYGFDLLLSSKESP--ASVAGSEIWLPGWIEAINNDKNDLFL 510
[Close]
BLAST of mRNA_H-paniculata_contig65973.14469.1 vs. uniprot
Match: A0A7T7DA56_9PHAE (Photosystem I (Fragment) n=1 Tax=Choristocarpus tenellus TaxID=116065 RepID=A0A7T7DA56_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.330e-6
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 GKALYGLDLLLASKDSPGPAGLAGSEFRFPGWIEAIYSDKMIYFL 135
            GKALYG D+LL+SK+SP  A +AGSE   P WIEAI +DK   FL
Sbjct:  283 GKALYGFDILLSSKESP--ASIAGSEIWLPSWIEAINTDKNDLFL 325
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65973.14469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0H5BN93_9PHAE4.770e-866.67Photosystem I (Fragment) n=1 Tax=Sporochnus bollea... [more]
A0A1Z4F594_9PHAE3.910e-764.44Photosystem I (Fragment) n=38 Tax=Phaeophyceae Tax... [more]
A0A0R6MFW0_UNDPI3.950e-764.44Photosystem I P700 chlorophyll a apoprotein A2 n=7... [more]
A0A7T7DA56_9PHAE1.330e-662.22Photosystem I (Fragment) n=1 Tax=Choristocarpus te... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65973contigH-paniculata_contig65973:93..323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size232
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.200737-CDS-H-paniculata_contig65973:92..3231622930777.200737-CDS-H-paniculata_contig65973:92..323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65973 93..323 +
1691481447.4499893-CDS-H-paniculata_contig65973:92..3231691481447.4499893-CDS-H-paniculata_contig65973:92..323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65973 93..323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65973.14469.1prot_H-paniculata_contig65973.14469.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65973 93..323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65973.14469.1

>prot_H-paniculata_contig65973.14469.1 ID=prot_H-paniculata_contig65973.14469.1|Name=mRNA_H-paniculata_contig65973.14469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
GKALYGLDLLLASKDSPGPAGLAGSEFRFPGWIEAIYSDKMIYFLYNSIV
VRLRSNLEMEILGYIRNRLHPDNQFRI
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mRNA from alignment at H-paniculata_contig65973:93..323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65973.14469.1 ID=mRNA_H-paniculata_contig65973.14469.1|Name=mRNA_H-paniculata_contig65973.14469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig65973:93..323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAAGCTCTATACGGTCTTGATCTGCTTTTAGCCTCTAAAGACAGTCC
AGGACCTGCTGGTTTAGCAGGTAGCGAATTTCGGTTTCCTGGTTGGATAG
AAGCGATATATAGTGATAAAATGATTTATTTTTTATATAACAGTATAGTG
GTGAGATTGAGATCCAACTTGGAGATGGAGATTCTGGGTTATATTCGAAA
TAGGCTGCACCCTGATAATCAATTTCGAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig65973:93..323+

>mRNA_H-paniculata_contig65973.14469.1 ID=mRNA_H-paniculata_contig65973.14469.1|Name=mRNA_H-paniculata_contig65973.14469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig65973:93..323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAAGCTCTATACGGTCTTGATCTGCTTTTAGCCTCTAAAGACAGTCC
AGGACCTGCTGGTTTAGCAGGTAGCGAATTTCGGTTTCCTGGTTGGATAG
AAGCGATATATAGTGATAAAATGATTTATTTTTTATATAACAGTATAGTG
GTGAGATTGAGATCCAACTTGGAGATGGAGATTCTGGGTTATATTCGAAA
TAGGCTGCACCCTGATAATCAATTTCGAATCGGAAAAGCTCTATACGGTC
TTGATCTGCTTTTAGCCTCTAAAGACAGTCCAGGACCTGCTGGTTTAGCA
GGTAGCGAATTTCGGTTTCCTGGTTGGATAGAAGCGATATATAGTGATAA
AATGATTTATTTTTTATATAACAGTATAGTGGTGAGATTGAGATCCAACT
TGGAGATGGAGATTCTGGGTTATATTCGAAATAGGCTGCACCCTGATAAT
CAATTTCGAATC
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