mRNA_H-paniculata_contig6590.14462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6590.14462.1
Unique NamemRNA_H-paniculata_contig6590.14462.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6590.14462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6590contigH-paniculata_contig6590:720..4319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size850
Cds size840
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6590.14462.1prot_H-paniculata_contig6590.14462.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6590 720..4310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.5625958-CDS-H-paniculata_contig6590:719..13741622930776.5625958-CDS-H-paniculata_contig6590:719..1374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6590 720..1374 -
1691481447.2036078-CDS-H-paniculata_contig6590:719..13741691481447.2036078-CDS-H-paniculata_contig6590:719..1374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6590 720..1374 -
1622930776.5788636-CDS-H-paniculata_contig6590:4125..43101622930776.5788636-CDS-H-paniculata_contig6590:4125..4310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6590 4126..4310 -
1691481447.215983-CDS-H-paniculata_contig6590:4125..43101691481447.215983-CDS-H-paniculata_contig6590:4125..4310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6590 4126..4310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.595854-UTR-H-paniculata_contig6590:4310..43191622930776.595854-UTR-H-paniculata_contig6590:4310..4319Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6590 4311..4319 -
1691481447.2248156-UTR-H-paniculata_contig6590:4310..43191691481447.2248156-UTR-H-paniculata_contig6590:4310..4319Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6590 4311..4319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6590.14462.1

>prot_H-paniculata_contig6590.14462.1 ID=prot_H-paniculata_contig6590.14462.1|Name=mRNA_H-paniculata_contig6590.14462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MRGTVRRKRAMKGRPAAASLATSLAFSFCGLCSLVGSFFVPGHLPGLTLL
PACPKQLPNLIKFPTPRASSSRTISRRCYFRGTTSHCGSPLLPPSSSSSL
SSYFSRRSRRPSCSFSCSRSGVALILSAHQASNSGDGSGNHDTEQENKAQ
KEQYHEHQQQEEEEVVGGEGTAITRAMRSSGASSYPMVVPMASEEGSAAA
AGSEWLHEGFQGIWKGTTVGEGGKLGAGGGELSGARRGSNGTPSFASSSE
SGVRRNQGVGGVGACAADERGLAVSGGLGG
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mRNA from alignment at H-paniculata_contig6590:720..4319-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6590.14462.1 ID=mRNA_H-paniculata_contig6590.14462.1|Name=mRNA_H-paniculata_contig6590.14462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3600bp|location=Sequence derived from alignment at H-paniculata_contig6590:720..4319- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGGATCATGAGGGGTACAGTACGGCGCAAGAGAGCTATGAAGGGGCG
ACCTGCAGCGGCTTCATTGGCAACATCCCTAGCTTTTTCTTTTTGTGGTC
TTTGTAGTCTAGTAGGGTCATTCTTCGTCCCTGGGCACCTTCCTGGGTTG
ACGCTGCTACCTGCATGTCCCAAACAGCTTCCTAATTTGATCAAGTAAGT
GAAACGCGAGCGGCTGTGTGCATTCTTTCCTGACCTGTTCTGTTCGATCT
GTGCTATGATGATGGGTATCCCGTGCACTCGATTGGCGGCTAGCATTAGT
GTCGACGTGTGTGAAATGAATGCCTTGGATTTTTTGGTGATAAGAATGCT
GAAGCTTTGCTCAGTCATTGCTTGCTTCGTGTCGAGAATATCAGAGAGAA
GCTTCGCAAATCAAATTGAGACGCAAAAAAGTGGTCCTAGTCCCTTCTCG
TTTGAAAAAGTATCTTTCGAAAACATGGTGCATCAACCTCCTCCTGAATG
GTAGTATAATCAATCAAAAGGTGACAGTGCAGACACTACGTACGATAGCT
TAACCCCGAAACTACAACCAGTGACACTTGATGTAGTGTTGATGATAACC
CCCCCCCCCACTCCATCCCTCTGAGACACAAATTATCTTGGAGAAGCCAC
TACGTGAAGTTTAAGCAGCTCCAAGTTTCAAAGTACAAAGGAAATACACC
GTCTTGCTCCGCACTGGTTACATATCTTCCCCTCCTATGCTTGAAGACTT
TGCGTACAGTGCAGTACAGGTGCCTGCGGCTCTACCCACAGTACCTTATC
GTGTGCTGTATGTAGATCATAACGCACTGGTCCATGTGAAGCTGTGTGTA
TGTATAAAGCTCCTCTCCGACTTTTTCCGCTTCATTTTCCTGGGGGGGGG
GGACAAACAAGAAAAACACCCTAGATGAACTTGTCGATATCTTTCATGAC
TATTAAATCACTGGGTACCCCGATTTGGGGCAGGGGGTATGTACGTTTGC
CACAATCCAGAAAGAGTCATCTTGAAATTCGATTCGTCTCACCAGGGCTA
CCTTACTATCTCTTTTGGGGCCGGATTTTCTGACCCAAATACAGATTTTC
GAATTTTTCGACTCTGAGAAGTTTGATTTCTCATGTTATGCGGGTGGATT
TCTTGGAAATCTGAGTTGAGAAATTCGAGACGGGAGGTACAGCCGGTCCC
ATTCCGCTATTTCTGGCAGAAATCAGAGTTGCCCTCACGTATCGAATTTC
TTGGAGTACCGCCATATAATAAAGGCGTTAATGTGTTTTTCATCCAAAGT
TTGAAATTTCACAGCGTATAGCAATACACAACCACGAGGATACAGACAAG
CCAAAGTGTGTGACCCACGTATCTTACAATTCAACGGCGGCCTTGTTCCT
GTTGGCCTGAAACATGGTCCCACCGTTCTGCTTCACACCAGTACAAACTA
CTACAGTGGTATAGTTTACAGTATTATCCACTGTGCCTTGCTGACAGCCG
ATTTGATCCCCTGAGCTTCATCTCACTCCACACACATTCCACGCATGGGT
TCGTTGTAAGATGCATCGCAGTTGACGGTACACTCACGATCGTGTGCTTT
TAAAATGGTGGTGCGAGTGTGTGCTGGAGGGTGGTGTACTCGAGGACCCA
AAGTTGGAGGGTGTGCTTGAATTTTGAAGTATGCCGCTTGTACTACTACG
CCTGCAAACCTCCATAAAAAACCGTCCTCTGGAAACCCGACCCTGTATCA
AACACAAATCGAATATTGAAGGGGTGTATTTATGCACCCTTTGAGGAATC
GGAAAGTAGAGAAATTCAACGGGAAAAATCCGACCCCATTAGAGATAGCC
TTAGGGCGTGCAAAGGCGAGTGGACCTGGGTCACTCTCCATCTTTTTTAG
TGCGACTCAGTCATAAGACACAATTTTAATTTGATCAATGTACACAACTA
ACTGCCAACCATGGGATAACTCATTAAAGATCACTCTCTGCTTGGCTTTC
AGGGGGTTGAGGAATCTGGTTTCGCCTTGGTTATGACCACCATTAATCAG
GGCACCTGCTGTACGTACACTACGTTTTATTAACTCTATTTGCCATTATC
CAACAACTACAACCAAATGCGAGCACAGCCACGGCTACCCCCATCCAATA
CTTGGTGCTTGTCCTGGACTCACGGTCTTGATACGCCCCCGATGGGAGCT
CGCTGATCTCGCAGTGGAGGCTCGCATGACGGTTATTTTTTCGACATGTA
CTTGGGTACAGAGTTTAAAAGCTGTTTCGAAAAGATGGCCGCCGCGACGA
CCACCACCTCTCAGCTTGAAATATATAGGACTTGGCAAGTTCAATTATAT
CAATTACAATTTAGAAAAAAATGCCGCAAAGCTGACGTCTATGCGTGCAG
CAGCTTAGCAAGCTCACTCACTGACTAACTTCGTGTTGTTTTCAGTCTTG
AGGTCATTCAACTTTTCAAGACTTACTTTAAGTATAGCGTTTATTACAAG
CTTGATTTCCTAAAGAAAACACTATTAGTAGTCAGCCGCTTGTAATAAAA
GAGAACTCGGACGGATATCATCTCGAAAATCGAGTTTCCGACCCCGATAA
GAAACGACCTAATTTTTTGCAGTTAGGAGGATATGTTTCTGTCATACATT
TTGTTTTACACGGCAAAAAAAAATAACCCATCCTTGCAAACCCTCCTTCT
CCCTTTTCCCCTACTACTGCTGCTGCTACTACTACTACTAGTACTACAGC
AGCAGCTATTGCTGATCGCACAAAACTCGTACATCTCTCGCTAAGCATTT
TATTGTCTCTTCACGCGACCTCTTAGAACACACTTCACACATATGCACAT
ACGCACAACACAGCCACAGCTCTACCCAACCCTCTACCCAACCTACCCAA
CCCATCCTCTTCCTCTTCTTCGCCTTTTACCCCTGCCGCCGCCAGATTTC
CCACCCCTCGCGCGTCAAGCAGCAGAACCATCAGTCGCCGCTGCTATTTC
CGTGGCACCACATCGCACTGCGGGTCGCCATTGCTGCCTCCCTCGTCGTC
GTCATCGTTGTCTTCTTATTTTTCTCGTCGCTCCCGACGGCCATCCTGCT
CCTTCTCCTGCTCGCGTAGCGGCGTTGCTTTAATTCTATCGGCGCACCAA
GCCAGCAATAGTGGCGACGGGAGTGGCAACCATGATACGGAGCAGGAGAA
CAAGGCACAAAAGGAACAATATCATGAACATCAACAGCAGGAAGAGGAGG
AGGTAGTGGGAGGTGAGGGGACTGCTATAACAAGAGCGATGCGTTCGAGC
GGGGCTTCTTCCTATCCGATGGTAGTACCGATGGCATCAGAGGAAGGATC
AGCAGCAGCAGCTGGAAGCGAATGGTTACATGAAGGTTTCCAGGGCATAT
GGAAGGGGACGACTGTCGGGGAAGGAGGAAAGTTGGGGGCTGGAGGGGGA
GAATTAAGTGGAGCGAGGAGAGGTAGCAACGGTACTCCGTCGTTTGCATC
GTCGAGCGAGTCGGGAGTGCGGCGGAATCAGGGCGTCGGGGGAGTGGGGG
CGTGCGCAGCAGACGAGAGAGGTTTAGCGGTTAGCGGAGGGCTCGGGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6590:720..4319-

>mRNA_H-paniculata_contig6590.14462.1 ID=mRNA_H-paniculata_contig6590.14462.1|Name=mRNA_H-paniculata_contig6590.14462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig6590:720..4319- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGGTACAGTACGGCGCAAGAGAGCTATGAAGGGGCGACCTGCAGC
GGCTTCATTGGCAACATCCCTAGCTTTTTCTTTTTGTGGTCTTTGTAGTC
TAGTAGGGTCATTCTTCGTCCCTGGGCACCTTCCTGGGTTGACGCTGCTA
CCTGCATGTCCCAAACAGCTTCCTAATTTGATCAAATGAGGGGTACAGTA
CGGCGCAAGAGAGCTATGAAGGGGCGACCTGCAGCGGCTTCATTGGCAAC
ATCCCTAGCTTTTTCTTTTTGTGGTCTTTGTAGTCTAGTAGGGTCATTCT
TCGTCCCTGGGCACCTTCCTGGGTTGACGCTGCTACCTGCATGTCCCAAA
CAGCTTCCTAATTTGATCAAATTTCCCACCCCTCGCGCGTCAAGCAGCAG
AACCATCAGTCGCCGCTGCTATTTCCGTGGCACCACATCGCACTGCGGGT
CGCCATTGCTGCCTCCCTCGTCGTCGTCATCGTTGTCTTCTTATTTTTCT
CGTCGCTCCCGACGGCCATCCTGCTCCTTCTCCTGCTCGCGTAGCGGCGT
TGCTTTAATTCTATCGGCGCACCAAGCCAGCAATAGTGGCGACGGGAGTG
GCAACCATGATACGGAGCAGGAGAACAAGGCACAAAAGGAACAATATCAT
GAACATCAACAGCAGGAAGAGGAGGAGGTAGTGGGAGGTGAGGGGACTGC
TATAACAAGAGCGATGCGTTCGAGCGGGGCTTCTTCCTATCCGATGGTAG
TACCGATGGCATCAGAGGAAGGATCAGCAGCAGCAGCTGGAAGCGAATGG
TTACATGAAGGTTTCCAGGGCATATGGAAGGGGACGACTGTCGGGGAAGG
AGGAAAGTTGGGGGCTGGAGGGGGAGAATTAAGTGGAGCGAGGAGAGGTA
GCAACGGTACTCCGTCGTTTGCATCGTCGAGCGAGTCGGGAGTGCGGCGG
AATCAGGGCGTCGGGGGAGTGGGGGCGTGCGCAGCAGACGAGAGAGGTTT
AGCGGTTAGCGGAGGGCTCGGGGGAATTTCCCACCCCTCGCGCGTCAAGC
AGCAGAACCATCAGTCGCCGCTGCTATTTCCGTGGCACCACATCGCACTG
CGGGTCGCCATTGCTGCCTCCCTCGTCGTCGTCATCGTTGTCTTCTTATT
TTTCTCGTCGCTCCCGACGGCCATCCTGCTCCTTCTCCTGCTCGCGTAGC
GGCGTTGCTTTAATTCTATCGGCGCACCAAGCCAGCAATAGTGGCGACGG
GAGTGGCAACCATGATACGGAGCAGGAGAACAAGGCACAAAAGGAACAAT
ATCATGAACATCAACAGCAGGAAGAGGAGGAGGTAGTGGGAGGTGAGGGG
ACTGCTATAACAAGAGCGATGCGTTCGAGCGGGGCTTCTTCCTATCCGAT
GGTAGTACCGATGGCATCAGAGGAAGGATCAGCAGCAGCAGCTGGAAGCG
AATGGTTACATGAAGGTTTCCAGGGCATATGGAAGGGGACGACTGTCGGG
GAAGGAGGAAAGTTGGGGGCTGGAGGGGGAGAATTAAGTGGAGCGAGGAG
AGGTAGCAACGGTACTCCGTCGTTTGCATCGTCGAGCGAGTCGGGAGTGC
GGCGGAATCAGGGCGTCGGGGGAGTGGGGGCGTGCGCAGCAGACGAGAGA
GGTTTAGCGGTTAGCGGAGGGCTCGGGGGA
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