mRNA_H-paniculata_contig65481.14404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65481.14404.1
Unique NamemRNA_H-paniculata_contig65481.14404.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: UPI00092E9081 (uncharacterized protein LOC109363584 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E9081)

HSP 1 Score: 63.5 bits (153), Expect = 4.320e-11
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQ 228
            +PK + EA    + E W  A + E++ +  N  WT VE  K+   +  M +YK+KIGEDGKVE YK HLV   YRQ
Sbjct:   49 DPKCYEEAMQILDHEKWQEAIKSEMESMKTNKVWTLVEASKDIKPIGCMWVYKKKIGEDGKVETYKAHLVDKGYRQ 124          
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE)

HSP 1 Score: 55.5 bits (132), Expect = 3.120e-8
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   70 EVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQ 228
            E + L +N  W  VE PK++ VV    ++KRKIGE+GKVE+YK  LVA  Y Q
Sbjct:    4 EFESLEENQVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQGYSQ 56          
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA)

HSP 1 Score: 58.2 bits (139), Expect = 4.830e-8
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 1
Query:    1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
            EP N  EA    + E W  A ++E++ +  NG W  ++RPK   VV +  +YK K+ E GKV+K+K  LV   Y Q  G
Sbjct:  788 EPLNFEEA---VKIEKWRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYG 863          
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: UPI000C1D611E (uncharacterized protein LOC111385039 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D611E)

HSP 1 Score: 57.0 bits (136), Expect = 1.190e-7
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    4 PKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQ 228
            P+ +H+A AS   +HW  A  VE+  +  N  WT    PK K  +    +YK K G DG++++YK HLVA  Y Q
Sbjct:  217 PQFYHQAVAS---DHWREAMAVELIAMESNNNWTITRLPKEKHSIGRRWVYKVKYGPDGRIDRYKAHLVAKDYTQ 288          
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A2N5URY5_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5URY5_9BASI)

HSP 1 Score: 55.8 bits (133), Expect = 3.010e-7
Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 1
Query:    4 PKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
            P NH  A A  E + W +AEEV++  +I +  W  +    +   +     YK+K+G D +V KYK H+ A  + QI G
Sbjct:  190 PSNHARAMACDEQDQWKKAEEVKIANMISHNVWELIPLQPHHHTIPSTWAYKKKLGADNQVVKYKAHICAQGFWQIYG 267          
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A061DP28_THECC (Integrase catalytic domain-containing protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061DP28_THECC)

HSP 1 Score: 55.8 bits (133), Expect = 3.170e-7
Identity = 24/65 (36.92%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   43 EHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
            EHW+ A + ++  ++ N  W+ V+RPK++ ++ +  I+KRK+  DG + +YK  LV   Y QI G
Sbjct:  643 EHWVTAIKEKLNMIVKNKTWSLVDRPKDRQLIGVKWIFKRKLNPDGTLNRYKARLVVKGYSQILG 707          
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A1E1KFU7_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium commune TaxID=914237 RepID=A0A1E1KFU7_9HELO)

HSP 1 Score: 55.1 bits (131), Expect = 5.850e-7
Identity = 25/79 (31.65%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
            +P+++ EA + PE   W  A E E   L+ N  W  V  PK++  ++    +++K+G +G++ +YK  +VA  ++QI+G
Sbjct:  282 DPQSYKEALSGPEAPLWKEAIEAEYNSLLQNRTWKVVRMPKDRKPLTTKWTFRKKLGGEGEITRYKARMVARGFQQIEG 360          
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A151T8W3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T8W3_CAJCA)

HSP 1 Score: 54.3 bits (129), Expect = 7.790e-7
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1
Query:    1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
            EPKN  +A A+   + WL A + E   L+DNG WT V  P N++ +    ++  K   DG V KYK  LVA  + Q  G
Sbjct:   24 EPKNTKQALAN---DTWLAAMKQEYNALLDNGTWTLVSLPSNRIAIGCKWVFCIKENPDGTVHKYKARLVAKGFHQQYG 99          
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 50.8 bits (120), Expect = 1.090e-6
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   70 EVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQ 228
            E+  + +N  W  V+ P+  +++   +++KRKIG DGKVE YK  LVA  YRQ
Sbjct:    4 EIDSMRENQVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQ 56          
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A1E1KE04_9HELO (Integrase catalytic domain-containing protein n=1 Tax=Rhynchosporium agropyri TaxID=914238 RepID=A0A1E1KE04_9HELO)

HSP 1 Score: 54.3 bits (129), Expect = 1.110e-6
Identity = 25/79 (31.65%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
            +P+++ EA + PE   W  A E E   L+ N  W  V  PK++  ++    +++K+G +G++ +YK  +VA  ++QI+G
Sbjct:  903 DPQSYKEALSGPEAPLWKEAIEAEYNSLLQNRTWKVVSIPKDRKPLTTKWTFRKKLGGEGEITRYKARIVARGFQQIEG 981          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
UPI00092E90814.320e-1144.74uncharacterized protein LOC109363584 n=1 Tax=Lupin... [more]
A0A1X7TFD5_AMPQE3.120e-850.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151T9B6_CAJCA4.830e-839.24Retrovirus-related Pol polyprotein from transposon... [more]
UPI000C1D611E1.190e-740.00uncharacterized protein LOC111385039 n=1 Tax=Olea ... [more]
A0A2N5URY5_9BASI3.010e-734.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A061DP28_THECC3.170e-736.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A1E1KFU7_9HELO5.850e-731.65Uncharacterized protein n=1 Tax=Rhynchosporium com... [more]
A0A151T8W3_CAJCA7.790e-739.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0HGX5_PUNGR1.090e-643.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1E1KE04_9HELO1.110e-631.65Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65481contigH-paniculata_contig65481:77..313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.9
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog176275.XP_008602273.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,3TMCJ@5125,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelHypocreales
Best eggNOG OGNA|NA|NA
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.2610505-CDS-H-paniculata_contig65481:76..3131622930768.2610505-CDS-H-paniculata_contig65481:76..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65481 77..313 -
1691481443.6337664-CDS-H-paniculata_contig65481:76..3131691481443.6337664-CDS-H-paniculata_contig65481:76..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65481 77..313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65481.14404.1prot_H-paniculata_contig65481.14404.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65481 77..313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65481.14404.1

>prot_H-paniculata_contig65481.14404.1 ID=prot_H-paniculata_contig65481.14404.1|Name=mRNA_H-paniculata_contig65481.14404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMM
IYKRKIGEDGKVEKYKCHLVAHRYRQIKG
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mRNA from alignment at H-paniculata_contig65481:77..313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65481.14404.1 ID=mRNA_H-paniculata_contig65481.14404.1|Name=mRNA_H-paniculata_contig65481.14404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig65481:77..313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCAAGAATCACCACGAGGCGCAGGCGTCGCCGGAGTGGGAACATTG GCTAAGAGCGGAGGAAGTCGAGGTGCAAGGCCTAATCGACAACGGGGCTT GGACGCAAGTAGAGCGCCCGAAGAACAAGTTGGTCGTGAGCATGATGATG ATCTACAAAAGAAAAATCGGCGAGGACGGAAAAGTGGAGAAATATAAGTG CCACCTGGTCGCCCACCGATACCGTCAGATCAAGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig65481:77..313-

>mRNA_H-paniculata_contig65481.14404.1 ID=mRNA_H-paniculata_contig65481.14404.1|Name=mRNA_H-paniculata_contig65481.14404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig65481:77..313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCAAGAATCACCACGAGGCGCAGGCGTCGCCGGAGTGGGAACATTG
GCTAAGAGCGGAGGAAGTCGAGGTGCAAGGCCTAATCGACAACGGGGCTT
GGACGCAAGTAGAGCGCCCGAAGAACAAGTTGGTCGTGAGCATGATGATG
ATCTACAAAAGAAAAATCGGCGAGGACGGAAAAGTGGAGAAATATAAGTG
CCACCTGGTCGCCCACCGATACCGTCAGATCAAGGGCGAGCCCAAGAATC
ACCACGAGGCGCAGGCGTCGCCGGAGTGGGAACATTGGCTAAGAGCGGAG
GAAGTCGAGGTGCAAGGCCTAATCGACAACGGGGCTTGGACGCAAGTAGA
GCGCCCGAAGAACAAGTTGGTCGTGAGCATGATGATGATCTACAAAAGAA
AAATCGGCGAGGACGGAAAAGTGGAGAAATATAAGTGCCACCTGGTCGCC
CACCGATACCGTCAGATCAAGGGC
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