mRNA_H-paniculata_contig654.14394.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig654.14394.1
Unique NamemRNA_H-paniculata_contig654.14394.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: A0A6H5K8K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.770e-15
Identity = 44/145 (30.34%), Postives = 81/145 (55.86%), Query Frame = 1
Query:    4 DFGQAFLTVDIDIEMYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYVQT 438
            D  QA++      E++I + ++C         +  A+Y L Q+GR W  +  + L A G++   A+PC +RR +DGE+  L+V YVDD L+ +  +E ++  +  L+ ++ ++DLGE ++Y G  I  + +    KL Q  Y+++
Sbjct:  911 DIKQAYIHAKFKEEIFIRLPQSCGDMSGKACKVERALYGLKQSGREWGFEAADALIANGYEQCRADPCVFRRMVDGEVVGLIVIYVDDILLVASEQERQE-LLASLQKKFPVKDLGECTWYDGIGIEMDLENGITKLSQTAYIES 1054          
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: UPI001A452E0F (uncharacterized protein n=3 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A452E0F)

HSP 1 Score: 80.9 bits (198), Expect = 9.590e-15
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   16 AFLTVDIDIEMYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYV 432
            A+L   +   +Y++  E   V PR V  +   +Y L Q+GR W  +FN  L+ +GF  +   PC Y +   GE   +VV YVDD L+ +   E       ++  R+K++D GE S+++G  IS N   R + + Q  Y+
Sbjct:    2 AYLNSRLKEVIYMKPLEGSGVAPRQVYKVVKGLYGLKQSGREWNQEFNRSLRCMGFFQVECAPCIYTKGQ-GEDMAIVVIYVDDTLVIAPWLETVLKVKKQIGQRWKMEDSGEVSHFLGIKISRNCTMRTMMIGQSGYI 139          
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.290e-14
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    4 DFGQAFLTVDIDIEMYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYV 432
            D  QA+    I  E+Y+ +A+        V  +  A+Y L Q+GR W  +  N L   G++   A+PC +R+ +DG++  ++V YVDD +     +E ++  +T L     ++DLGE ++Y GC I  + +     L Q  Y+
Sbjct:  848 DIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEE-LLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYI 989          
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.330e-14
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    4 DFGQAFLTVDIDIEMYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYV 432
            D  QA+    I  E+Y+ +A+        V  +  A+Y L Q+GR W  +  N L   G++   A+PC +R+ +DG++  ++V YVDD +     +E ++  +T L     ++DLGE ++Y GC I  + +     L Q  Y+
Sbjct: 1401 DIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEE-LLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYI 1542          
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: UPI001A5F47C3 (uncharacterized protein n=1 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A5F47C3)

HSP 1 Score: 80.5 bits (197), Expect = 1.450e-14
Identity = 44/143 (30.77%), Postives = 73/143 (51.05%), Query Frame = 1
Query:    4 DFGQAFLTVDIDIEMYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYV 432
            D   A+L   +   +Y++  E   V P  V  +   +Y L Q+G+ W  +FN  L+ LGF  +   PC Y +   GE   +VV YVDD L+ +  +E       ++  R+K++D GE S+++G  IS +   R + + Q  Y+
Sbjct:   54 DITMAYLNSTLKEAIYMKPPEGSGVAPGQVYKVVKGLYGLKQSGQEWNQEFNRSLQCLGFFQVECTPCIYTKGQ-GEDMAIVVIYVDDTLVIAPRQETVLKVKKQISQRWKMEDSGEVSHFLGIKISQDHVMRTMTIGQSGYI 195          
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: A0A6L2JRI2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JRI2_TANCI)

HSP 1 Score: 80.5 bits (197), Expect = 1.720e-14
Identity = 45/146 (30.82%), Postives = 81/146 (55.48%), Query Frame = 1
Query:    4 DFGQAFLTVDIDIEMYIEVAEACQVFPRD--VGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYVQ 435
            D   AFL  +++ E+Y+  +E  +   ++  V  L  ++Y L QA RCWY +F++ +++LG+  LHA+PCAY +        +++ YVD  L+    K   +    +L   +K++DLG  +  +G  I  +R +R++ L Q  YV+
Sbjct:  461 DVKTAFLHGNLEEEIYMLRSEGFKQKRKENLVCRLNKSLYGLKQARRCWYKRFDSFIRSLGYNRLHADPCAYFKRFGNNDFIILLLYVDYMLVTGPNKYRINNLKAQLVREFKMKDLGPANKILGMQIYRDRVSRKIWLSQKSYVK 606          
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: UPI001A627A53 (uncharacterized protein n=4 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A627A53)

HSP 1 Score: 80.5 bits (197), Expect = 1.770e-14
Identity = 47/156 (30.13%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    4 DFGQAFLTVDIDIEMYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYV-QT*PSNLDRQAQ 468
            D   A+L   +   +Y++  E   V P  V  +   +Y L Q+GR W  +F+  L+ +GF  +   PC Y +   GE   +VV YVDD L+ +   E       ++  R+K++D GE S+++G  IS +R  R + + Q  Y+ Q    +LD++ +
Sbjct:  955 DITMAYLNSTLKEAIYMKPPEGSGVAPGKVYKVVKGLYGLKQSGREWNQEFDRSLRRMGFFQVECAPCIYTKGQ-GEDMAIVVIYVDDTLVIAPRLETVLEVKKQISQRWKMEDSGEVSHFLGIKISRDRAMRTMTIGQSGYIDQVLAKHLDKRTK 1109          
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: UPI001A499DEB (uncharacterized protein n=2 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A499DEB)

HSP 1 Score: 79.3 bits (194), Expect = 4.030e-14
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = 1
Query:    4 DFGQAFLTVDIDIEMYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYV-QT*PSNLDRQAQ 468
            D   A+L   +   +Y++  E   V P  V  +   +Y L Q+GR W  +F+  L+ +GF  +   PC Y +   GE   +VV YVDD L+ +   E       ++  R+K++D GE S+++G  IS +R  R + + Q  Y+ Q    +LD+  +
Sbjct:  205 DITMAYLNSTLKEAIYMKPPEGSGVAPGKVYKVVKGLYGLKQSGREWNQEFDRSLQCMGFFQVECAPCIYTKGQ-GEDMAIVVIYVDDTLVIAPRLETVLKVKKQIGQRWKMEDSGEVSHFLGIKISRDRAMRTMTIGQSGYIDQVLAKHLDKHTK 359          
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: UPI001A60B752 (uncharacterized protein n=2 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A60B752)

HSP 1 Score: 79.0 bits (193), Expect = 4.900e-14
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = 1
Query:    4 DFGQAFLTVDIDIEMYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYV-QT*PSNLDRQAQ 468
            D   A+L   +   +Y++      V P  V  +   +Y L Q+GR W  +F+  L+ +GF  +   PC Y +   GE   +VV YVDD L+ +   E       ++  R+K++D GE S+++G  IS NR  R + + Q  Y+ Q    +LD++ +
Sbjct:   32 DITMAYLNSTLKEAIYMKPPGGSGVAPGKVYKVVKGLYGLKQSGREWNQEFDRSLRRMGFFQVECAPCIYTKGQ-GEDMAIVVIYVDDTLVIAPQLETVLKVKKQIGQRWKMEDSGEVSHFLGIKISRNRAMRTMTIGQSGYIDQVLAKHLDKRTK 186          
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Match: UPI001A545582 (uncharacterized protein n=1 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A545582)

HSP 1 Score: 79.0 bits (193), Expect = 6.050e-14
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = 1
Query:    4 DFGQAFLTVDIDIEMYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLHAEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQDLGEESYYMGCHISPNRDARELKLDQHLYV-QT*PSNLDRQAQ 468
            D   A+L   +   +Y++      V P  V  +   +Y L Q+GR W  +F+  L+ +GF  +   PC Y +   GE   +VV YVDD L+ +   E       ++  R+K++D GE S+++G  IS NR  R + + Q  Y+ Q    +LD++ +
Sbjct:  892 DITMAYLNSTLKEAIYMKPPGGSGVAPGKVYKVVKGLYGLKQSGREWNQEFDRSLRRMGFFQVECAPCIYTKGQ-GEDMAIVVIYVDDTLVIAPRLETVLKVKKQIGQRWKMEDSGEVSHFLGIKISRNRAMRTMTIGQSGYIDQVLAKHLDKRTK 1046          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig654.14394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8K4_9PHAE3.770e-1530.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001A452E0F9.590e-1532.37uncharacterized protein n=3 Tax=Ustilago hordei Ta... [more]
A0A6H5JKS3_9PHAE1.290e-1430.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.330e-1430.07Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
UPI001A5F47C31.450e-1430.77uncharacterized protein n=1 Tax=Ustilago hordei Ta... [more]
A0A6L2JRI2_TANCI1.720e-1430.82Retrovirus-related Pol polyprotein from transposon... [more]
UPI001A627A531.770e-1430.13uncharacterized protein n=4 Tax=Ustilago hordei Ta... [more]
UPI001A499DEB4.030e-1430.13uncharacterized protein n=2 Tax=Ustilago hordei Ta... [more]
UPI001A60B7524.900e-1430.13uncharacterized protein n=2 Tax=Ustilago hordei Ta... [more]
UPI001A5455826.050e-1430.13uncharacterized protein n=1 Tax=Ustilago hordei Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig654contigH-paniculata_contig654:18489..19000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.4
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog5270.UM00214P0
KEGG rclassRC00004,RC02723,RC02817
KEGG koko:K00140
KEGG ReactionR00705,R00706,R00922,R00935
KEGG Pathwayko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200
KEGG ModuleM00013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aldehyde dehydrogenase family
EggNOG OGs38EU5@33154,3N0F5@452284,3NWK1@4751,3UYCZ@5204,COG2801@1,KOG0017@2759,KOG2449@1,KOG2449@2759
EC1.2.1.18,1.2.1.27
COG Functional cat.EG
Best tax levelUstilaginomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size512
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig654.14394.1prot_H-paniculata_contig654.14394.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig654 18534..18929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.2270927-UTR-H-paniculata_contig654:18488..185331622930767.2270927-UTR-H-paniculata_contig654:18488..18533Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig654 18489..18533 +
1691481443.1325164-UTR-H-paniculata_contig654:18488..185331691481443.1325164-UTR-H-paniculata_contig654:18488..18533Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig654 18489..18533 +
1622930767.2611747-UTR-H-paniculata_contig654:18929..190001622930767.2611747-UTR-H-paniculata_contig654:18929..19000Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig654 18930..19000 +
1691481443.1537077-UTR-H-paniculata_contig654:18929..190001691481443.1537077-UTR-H-paniculata_contig654:18929..19000Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig654 18930..19000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.2441046-CDS-H-paniculata_contig654:18533..189291622930767.2441046-CDS-H-paniculata_contig654:18533..18929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig654 18534..18929 +
1691481443.1445482-CDS-H-paniculata_contig654:18533..189291691481443.1445482-CDS-H-paniculata_contig654:18533..18929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig654 18534..18929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig654.14394.1

>prot_H-paniculata_contig654.14394.1 ID=prot_H-paniculata_contig654.14394.1|Name=mRNA_H-paniculata_contig654.14394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MYIEVAEACQVFPRDVGTLTMAIYRLMQAGRCWYNKFNNDLKALGFQPLH
AEPCAYRRNMDGELKKLVVAYVDDRLIASKGKEAKDPFVTELESRYKIQD
LGEESYYMGCHISPNRDARELKLDQHLYVQT*
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mRNA from alignment at H-paniculata_contig654:18489..19000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig654.14394.1 ID=mRNA_H-paniculata_contig654.14394.1|Name=mRNA_H-paniculata_contig654.14394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=512bp|location=Sequence derived from alignment at H-paniculata_contig654:18489..19000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACTTCGGGCAAGCGTTTTTGACGGTAGACATTGACATCGAGATGTA TATCGAGGTGGCGGAGGCATGCCAGGTGTTTCCGAGAGATGTGGGAACGC TGACGATGGCCATCTACCGCCTGATGCAAGCCGGCCGCTGCTGGTACAAC AAGTTCAACAACGACCTGAAAGCGCTGGGTTTCCAGCCATTACACGCTGA GCCCTGCGCATACCGCCGGAACATGGACGGAGAGTTAAAGAAACTGGTGG TGGCATACGTGGACGACCGCCTGATCGCCAGCAAAGGAAAGGAAGCCAAG GATCCGTTTGTGACAGAGCTGGAATCGAGGTACAAAATTCAGGACTTGGG GGAAGAGTCCTATTACATGGGCTGCCACATATCGCCCAACAGGGACGCGC GGGAGCTGAAGCTCGACCAGCACCTCTACGTGCAGACATAGCCCAGCAAT CTAGATCGTCAAGCCCAGCATGATCCCGGCGGAGACGGGGGTCCAACCGC TGTTGAAGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig654:18489..19000+

>mRNA_H-paniculata_contig654.14394.1 ID=mRNA_H-paniculata_contig654.14394.1|Name=mRNA_H-paniculata_contig654.14394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig654:18489..19000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATATCGAGGTGGCGGAGGCATGCCAGGTGTTTCCGAGAGATGTGGG
AACGCTGACGATGGCCATCTACCGCCTGATGCAAGCCGGCCGCTGCTGGT
ACAACAAGTTCAACAACGACCTGAAAGCGCTGGGTTTCCAGCCATTACAC
GCTGAGCCCTGCGCATACCGCCGGAACATGGACGGAGAGTTAAAGAAACT
GGTGGTGGCATACGTGGACGACCGCCTGATCGCCAGCAAAGGAAAGGAAG
CCAAGGATCCGTTTGTGACAGAGCTGGAATCGAGGTACAAAATTCAGGAC
TTGGGGGAAGAGTCCTATTACATGGGCTGCCACATATCGCCCAACAGGGA
CGCGCGGGAGCTGAAGCTCGACCAGCACCTCTACGTGCAGACATAGATGT
ATATCGAGGTGGCGGAGGCATGCCAGGTGTTTCCGAGAGATGTGGGAACG
CTGACGATGGCCATCTACCGCCTGATGCAAGCCGGCCGCTGCTGGTACAA
CAAGTTCAACAACGACCTGAAAGCGCTGGGTTTCCAGCCATTACACGCTG
AGCCCTGCGCATACCGCCGGAACATGGACGGAGAGTTAAAGAAACTGGTG
GTGGCATACGTGGACGACCGCCTGATCGCCAGCAAAGGAAAGGAAGCCAA
GGATCCGTTTGTGACAGAGCTGGAATCGAGGTACAAAATTCAGGACTTGG
GGGAAGAGTCCTATTACATGGGCTGCCACATATCGCCCAACAGGGACGCG
CGGGAGCTGAAGCTCGACCAGCACCTCTACGTGCAGACATAG
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