mRNA_H-paniculata_contig6539.14392.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE) HSP 1 Score: 148 bits (374), Expect = 9.510e-38 Identity = 82/170 (48.24%), Postives = 115/170 (67.65%), Query Frame = 1
Query: 13 EYINN-LLAGEGRNL-KLEKYGSSLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERD-EGCFRGEVFIFESGGIEYIEFHVDLLGGQSNEEN-DALCDEVGPEGGSYNIRFDQAAATRCQHKH 510
+YIN LL + +L +L Y +LP+S++T HSWM++L C+++RA +S+YT E+K+VV Y EYIE++R ALRQPLW RV+R +L QEE L +L R EG F EV+ + G + IEFHVDLL + +N D L +GPEGG Y++RFDQAAA +C++ H
Sbjct: 372 KYINGPLLQDDKEDLSRLHAYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLLRDDGSVDNFDKLRAALGPEGGDYSVRFDQAAAAQCEYFH 541
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.590e-37 Identity = 80/173 (46.24%), Postives = 113/173 (65.32%), Query Frame = 1
Query: 13 EYINNLLAGEGRN---LKLEKYGSSLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERD-EGCFRGEVFIFESGGIEYIEFHVDLLGGQSNEEN-DALCDEVGPEGGSYNIRFDQAAATRCQHKHEP 516
+YIN L + + +L Y +LP+S++T+HSWM++L C+++R +S+YT E+K+VV Y EYIE++R ALRQPLW RV+R +L QEE L +L R EG F EV+ + G + IEFHVDLL + +N D L +GPEGG Y++ FDQAAA +C+H H P
Sbjct: 325 KYINGPLLQDDKEEDLSRLHAYQVNLPVSMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLLRDDGSVDNFDKLRAALGPEGGDYSVCFDQAAAAQCEHFHLP 497
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE) HSP 1 Score: 137 bits (344), Expect = 8.470e-34 Identity = 81/170 (47.65%), Postives = 108/170 (63.53%), Query Frame = 1
Query: 16 YINN-LLAGEGRNL-KLEKYGSSLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERDEGCFRGEVFIFESGGIEYIEFHVDLLGGQSNEEN-DALCDEVGPEGGSYNIRFDQAAATRCQHKHEP 516
YIN L A E +L +L Y +LP+S+ T HSWM+ L CK++RA +S+YT G E+KDVV Y +YI+ KR ALRQPLW RV+R +LT EE L ++ F EV+ G E IEFHVDLL + + D L E+GPEGG +++RF++AAA C+H H P
Sbjct: 327 YINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDG-IKGPAKDFCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTP 495
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE) HSP 1 Score: 134 bits (337), Expect = 5.310e-33 Identity = 80/170 (47.06%), Postives = 108/170 (63.53%), Query Frame = 1
Query: 16 YINN-LLAGEGRNL-KLEKYGSSLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERDEGCFRGEVFIFESGGIEYIEFHVDLLGGQSNEEN-DALCDEVGPEGGSYNIRFDQAAATRCQHKHEP 516
YIN L A E +L +L + +LP+S+ T HSW++ L CK++RA +S+YT G E+KDVV Y +YI+ KR ALRQPLW RV+R +LT EE L + E F EV+ G E IEFHVDLL + + D L E+GPEGG +++RF++AAA C+H H P
Sbjct: 285 YINQWLFANEIGDLSRLLSHQVNLPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAED-FCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTP 453
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE) HSP 1 Score: 132 bits (333), Expect = 2.840e-32 Identity = 72/148 (48.65%), Postives = 97/148 (65.54%), Query Frame = 1
Query: 76 SLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERDEGCFRGEVFIFESGGIEYIEFHVDLLGGQSNEEN-DALCDEVGPEGGSYNIRFDQAAATRCQHKHEP 516
+LP+S+ T HSWM+ L CK++RA +S+YT G E+KDVV Y +YI+ KR ALRQPLW RV+R +LT EE L ++ F EV+ G E IEFHVDLL + + D L E+GPEGG +++RF++AAA C+H H P
Sbjct: 454 NLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDG-IKGPAKDFCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTP 600
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE) HSP 1 Score: 132 bits (331), Expect = 3.680e-32 Identity = 85/222 (38.29%), Postives = 116/222 (52.25%), Query Frame = 1
Query: 13 EYINN-LLAGEGRNL-KLEKYGSSLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERD-EGCFRGEVFIFESGGIEYIEFHVDLLGGQSNEEN--------DAL-------------------------------------------CDEVGPEGGSYNIRFDQAAATRCQHKHEP 516
+YIN LL + +L +L Y +LP+S++T HSWM++L CK++RA +S+YT E+K+VV Y EYIE++R ALRQPLW RV+R +L QEE L +L R EG F EV+ + G + IEFHVDLL + +N DA +GPEGG Y++RFDQAAA +C+H H P
Sbjct: 37 KYINGPLLQDDKEDLSRLHAYQVNLPVSMSTTHSWMIRLGCKYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLLRDDGSVDNFDKLRAALDAARTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPEGGDYSVRFDQAAAAQCEHFHPP 258
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.120e-32 Identity = 78/170 (45.88%), Postives = 104/170 (61.18%), Query Frame = 1
Query: 16 YINNLLAGE--GRNLKLEKYGSSLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERDEGCFRGEVFIFESGGIEYIEFHVDLLGGQSNEEN-DALCDEVGPEGGSYNIRFDQAAATRCQHKHEP 516
YIN L G +L Y +LP+S+ T HSWM+ L CK++RA +S+YT G E+KDVV Y +YI+ KR AL QPLW RV+R +LT +E L + E F EV+ G E IEFHVDLL + + D L E+GPEGG +++RF++AAA C+H H P
Sbjct: 442 YINQWLFANQIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALWQPLWVRVQRDTLTPKELQRLDGIKGPAED-FCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTP 610
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE) HSP 1 Score: 116 bits (290), Expect = 1.790e-26 Identity = 75/193 (38.86%), Postives = 99/193 (51.30%), Query Frame = 1
Query: 76 SLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERDE--GCFRG-------------------------------------------EVFIFESGGIEYIEFHVDLLGGQSNEEN-DALCDEVGPEGGSYNIRFDQAAATRCQHKHEP 516
+LP+S+ T HSWM+ L CK++RA +S+YT G E+KDVV Y +YI+ KR ALRQPLW RV+R +LT EE L + E G RG EV+ G E IEFHVDLL + + DA ++GPEGG Y++RF++AAA C+H H P
Sbjct: 375 NLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAEEFGAERGASASSSTSISCGTTAPSIDSTISVLNLXXXXXXXXXXXXXXXAEVYDCVVEGRECIEFHVDLLRDIGSVDRFDARRAKLGPEGGHYSVRFEEAAALPCEHFHTP 567
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE) HSP 1 Score: 109 bits (273), Expect = 3.120e-24 Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 1
Query: 76 SLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERDEGCFRGEVFIFESGGIEYIEFHVDLL-GGQSNEENDALCDEVGPEGGSY 462
+LP+S+ T HSWM+ CK++RA +S+YT G E+KDVV Y +YI+ KR ALRQPLW RV+R +LT EE L + E F EV+ G E IEFHVDL+ S + DAL E+GPEGG +
Sbjct: 290 NLPVSMATTHSWMIVPGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAEE-FGAEVYDCVVEGRESIEFHVDLVRDNDSVDRFDALRAELGPEGGHF 418
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE) HSP 1 Score: 105 bits (262), Expect = 9.230e-23 Identity = 72/170 (42.35%), Postives = 95/170 (55.88%), Query Frame = 1
Query: 16 YINN-LLAGEGRNL-KLEKYGSSLPISLTTVHSWMMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVERLSLTQEEEVNLMALVERDEGCFRGEVFIFESGGIEYIEFHVDLLGGQSNEEN-DALCDEVGPEGGSYNIRFDQAAATRCQHKHEP 516
YIN L A E +L +L Y +LP+S+ T HSW++ L CK KDVV +YI+ KR ALRQPLW RV+R +LT EE L ++ F EV+ G E IEFHVDLL + + D L E+GPEGG +++RF++AAA C+H H P
Sbjct: 400 YINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWIIALGCK---------------KDVVVCRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDG-IKGPAKDFCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTP 553 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6539.14392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6539.14392.1 >prot_H-paniculata_contig6539.14392.1 ID=prot_H-paniculata_contig6539.14392.1|Name=mRNA_H-paniculata_contig6539.14392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp MMKLDCKFDRAGQSYYTGGRERKDVVSYSAEYIEEKRTFALRQPLWKRVEback to top mRNA from alignment at H-paniculata_contig6539:1871..2480+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6539.14392.1 ID=mRNA_H-paniculata_contig6539.14392.1|Name=mRNA_H-paniculata_contig6539.14392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=610bp|location=Sequence derived from alignment at H-paniculata_contig6539:1871..2480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6539:1871..2480+ >mRNA_H-paniculata_contig6539.14392.1 ID=mRNA_H-paniculata_contig6539.14392.1|Name=mRNA_H-paniculata_contig6539.14392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig6539:1871..2480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |