mRNA_H-paniculata_contig65385.14391.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65385.14391.1
Unique NamemRNA_H-paniculata_contig65385.14391.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65385.14391.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.520e-11
Identity = 36/133 (27.07%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:    1 MVIDGSPSGAWSIFEDWFRGTTSGERTRVRKEFENLAIQPNETPNEFLARSFVIVERMKEIGVDMTETEVHHQIVRPLPDRFAIAKYIMFMSKNLCRKDLEEGVRTAKLEM-DLKDESGKGGNGSQQAAVVIG 396
            ++ DGSPSG W IF +++      E+ R+  ++  L ++  ETP ++  R  V+  R+   GV  ++ + +  +V  L D + + K +        R+ +E+GVR A  E+   ++E  K G G+  +  + G
Sbjct:   94 IIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLSDEYMMEKILTMSPIPRSREKIEKGVRDAHAELLRRREEEPKNGAGTHASGDIRG 226
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BLAST of mRNA_H-paniculata_contig65385.14391.1 vs. uniprot
Match: A0A151SHZ5_CAJCA (Uncharacterized protein n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SHZ5_CAJCA)

HSP 1 Score: 52.8 bits (125), Expect = 1.670e-5
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   28 AWSIFEDWFRGTTSGERTRV---RKEFENLAIQPNETPNEFLARSFVIVERMKEIGVDMTETEVHHQIVRPLPDRFAIAKYIMFMSKNLCRKDLEE 306
            AW I E    G T  ++ R+   R+++E L+++ NET  +++ R   +V  MK +G  M E +V  +++R LP +F      +  SKNL    L+E
Sbjct:   94 AWEILERVHSGATKTKKVRLQTLRRQYELLSMESNETVVDYITRVQTMVNTMKGLGEKMAELQVIEKVLRTLPMKFDHIVVAIEESKNLEDMSLDE 189
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BLAST of mRNA_H-paniculata_contig65385.14391.1 vs. uniprot
Match: UPI00063AB69A (uncharacterized protein LOC105767199 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AB69A)

HSP 1 Score: 52.8 bits (125), Expect = 2.560e-5
Identity = 32/109 (29.36%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    1 MVIDGSPSGAWSIFEDWFRGTTSGERTRV---RKEFENLAIQPNETPNEFLARSFVIVERMKEIGVDMTETEVHHQIVRPLPDRFAIAKYIMFMSKNLCRKDLEEGVRT 318
            M  D SP  AW   ++ F GT    + +V   R++FENL ++ +ET  ++  R   IV  ++ +GVD TE+ V  +++  L ++F      +  S++L    L E + +
Sbjct:   84 MACD-SPKQAWEKLKEEFMGTDKTRQQQVMNLRRDFENLRMRESETIKQYSDRIMAIVNSIRLLGVDFTESRVVEKVITTLSEKFESKISSLEDSRDLSAISLSELINS 191
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BLAST of mRNA_H-paniculata_contig65385.14391.1 vs. uniprot
Match: A0A151T3F7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T3F7_CAJCA)

HSP 1 Score: 53.1 bits (126), Expect = 2.740e-5
Identity = 33/109 (30.28%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:   28 AWSIFEDWFRGTTSGERTRV---RKEFENLAIQPNETPNEFLARSFVIVERMKEIGVDMTETEVHHQIVRPLPDRFAIAKYIMFMSKNLCRKDLEEGVRTAKLEMDLKD 345
            AW I E    G T  ++ R+   R+++E L+++ NET  +++ R   +V  MK +G  M E +V  +++R LP +F      +  SKNL    L+E   + + E++ +D
Sbjct:   94 AWEILERVHGGATKTKKVRLQTLRRQYELLSMESNETVVDYITRVQTMVNTMKGLGEKMAELQVIEKVLRTLPMKFDHIVVEIEESKNLEDMSLDELQGSLEQEVNSED 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65385.14391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE6.520e-1127.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A151SHZ5_CAJCA1.670e-532.29Uncharacterized protein n=2 Tax=Cajanus cajan TaxI... [more]
UPI00063AB69A2.560e-529.36uncharacterized protein LOC105767199 n=1 Tax=Gossy... [more]
A0A151T3F7_CAJCA2.740e-530.28Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65385contigH-paniculata_contig65385:308..751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930766.7216053-CDS-H-paniculata_contig65385:307..7511622930766.7216053-CDS-H-paniculata_contig65385:307..751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65385 308..751 -
1691481442.9001486-CDS-H-paniculata_contig65385:307..7511691481442.9001486-CDS-H-paniculata_contig65385:307..751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65385 308..751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65385.14391.1prot_H-paniculata_contig65385.14391.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65385 308..751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65385.14391.1

>prot_H-paniculata_contig65385.14391.1 ID=prot_H-paniculata_contig65385.14391.1|Name=mRNA_H-paniculata_contig65385.14391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MVIDGSPSGAWSIFEDWFRGTTSGERTRVRKEFENLAIQPNETPNEFLAR
SFVIVERMKEIGVDMTETEVHHQIVRPLPDRFAIAKYIMFMSKNLCRKDL
EEGVRTAKLEMDLKDESGKGGNGSQQAAVVIGANISSISSANNSSHRT
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mRNA from alignment at H-paniculata_contig65385:308..751-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65385.14391.1 ID=mRNA_H-paniculata_contig65385.14391.1|Name=mRNA_H-paniculata_contig65385.14391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at H-paniculata_contig65385:308..751- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATCGATGGCTCGCCATCTGGGGCGTGGAGTATTTTTGAAGACTG
GTTCAGAGGCACAACATCTGGAGAACGTACTAGAGTTAGGAAGGAATTTG
AGAACTTGGCAATACAGCCAAATGAGACACCCAATGAATTTCTGGCTAGA
TCTTTTGTCATCGTAGAGCGGATGAAGGAGATTGGTGTTGACATGACAGA
GACAGAAGTTCACCATCAGATCGTTCGTCCCCTGCCCGATCGTTTCGCTA
TTGCGAAATACATTATGTTTATGAGTAAGAATTTGTGTAGGAAAGATCTG
GAAGAAGGGGTCCGAACTGCCAAACTAGAGATGGACCTCAAGGACGAGTC
AGGTAAGGGGGGAAACGGGTCGCAGCAAGCGGCGGTGGTAATCGGGGCAA
ATATCAGTAGCATCAGCAGCGCCAACAACAGCAGTCATCGTACC
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Coding sequence (CDS) from alignment at H-paniculata_contig65385:308..751-

>mRNA_H-paniculata_contig65385.14391.1 ID=mRNA_H-paniculata_contig65385.14391.1|Name=mRNA_H-paniculata_contig65385.14391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig65385:308..751- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATCGATGGCTCGCCATCTGGGGCGTGGAGTATTTTTGAAGACTG
GTTCAGAGGCACAACATCTGGAGAACGTACTAGAGTTAGGAAGGAATTTG
AGAACTTGGCAATACAGCCAAATGAGACACCCAATGAATTTCTGGCTAGA
TCTTTTGTCATCGTAGAGCGGATGAAGGAGATTGGTGTTGACATGACAGA
GACAGAAGTTCACCATCAGATCGTTCGTCCCCTGCCCGATCGTTTCGCTA
TTGCGAAATACATTATGTTTATGAGTAAGAATTTGTGTAGGAAAGATCTG
GAAGAAGGGGTCCGAACTGCCAAACTAGAGATGGACCTCAAGGACGAGTC
AGGTAAGGGGGGAAACGGGTCGCAGCAAGCGGCGGTGGTAATCGGGGCAA
ATATCAGTAGCATCAGCAGCGCCAACAACAGCAGTCATCGTACCATGGTG
ATCGATGGCTCGCCATCTGGGGCGTGGAGTATTTTTGAAGACTGGTTCAG
AGGCACAACATCTGGAGAACGTACTAGAGTTAGGAAGGAATTTGAGAACT
TGGCAATACAGCCAAATGAGACACCCAATGAATTTCTGGCTAGATCTTTT
GTCATCGTAGAGCGGATGAAGGAGATTGGTGTTGACATGACAGAGACAGA
AGTTCACCATCAGATCGTTCGTCCCCTGCCCGATCGTTTCGCTATTGCGA
AATACATTATGTTTATGAGTAAGAATTTGTGTAGGAAAGATCTGGAAGAA
GGGGTCCGAACTGCCAAACTAGAGATGGACCTCAAGGACGAGTCAGGTAA
GGGGGGAAACGGGTCGCAGCAAGCGGCGGTGGTAATCGGGGCAAATATCA
GTAGCATCAGCAGCGCCAACAACAGCAGTCATCGTACC
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