mRNA_H-paniculata_contig65.14338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65.14338.1
Unique NamemRNA_H-paniculata_contig65.14338.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig65.14338.1 vs. uniprot
Match: D8LDZ6_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ6_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.830e-41
Identity = 77/107 (71.96%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 LPSSLMFIVVVYHISGLRFIYANIVAWTHYLLLWVVMLGGFCCTLDFSSFFTQSAAIAPILMLLSMMSSNTGERQIRGDFVLRCNISMERARADEICTSMLPPHVSE 321
            LPSSL+F+VVVYHISGLR++Y+NIVAW HY  LW+ M+ GFCC   F SFFTQS+A+ PIL++LSM+SSNT ERQIR DFVLRCNIS ER RAD IC SMLP  VSE
Sbjct:  164 LPSSLLFVVVVYHISGLRYMYSNIVAWMHYFFLWLAMVSGFCCGDGFWSFFTQSSALVPILLVLSMISSNTVERQIREDFVLRCNISSERGRADAICASMLPASVSE 270
[Close]
BLAST of mRNA_H-paniculata_contig65.14338.1 vs. uniprot
Match: A0A485L1I4_9STRA (Aste57867_14452 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1I4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.020e-10
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   10 SLMFIVVVYHISGLRFIYANIVAWTHYLLLWVVMLGGFCCTLDFSSFFTQSAAIAPILMLLSMMSSNTGERQIRGDFVLRCNISMERARADEICTSMLPPHVSE 321
            SL+FI ++++ SG+ F  A + AW H LL+ +V L  +    +  +         P+L    M+S+   E+ IR +FVLRCN++ +R R D++  +MLP H+ E
Sbjct:  285 SLIFISILFNASGMMFTMATLCAWFHILLMLLVPLILYPARPELQN---SQIVYGPVLTCFCMLSAYNSEKHIRKEFVLRCNVTEDRKRRDDLLETMLPAHIKE 385
[Close]
BLAST of mRNA_H-paniculata_contig65.14338.1 vs. uniprot
Match: A0A024UGZ6_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGZ6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.750e-10
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:   10 SLMFIVVVYHISGLRFIYANIVAWTHYLLLWVVMLGGFCCTLDFSSFFTQSAAIAPILMLLSMMSSNTGERQIRGDFVLRCNISMERARADEICTSMLPPHVSE 321
            SL++  ++++ SG+ FI +   AW H +L+  V  G +              A  PIL    M+S+   ER IR +FVLRCN++ +R R D++  +MLP H+ E
Sbjct:  245 SLIYTSILFNASGMTFIMSTTCAWLHIVLMIAVPFGAYPSHRQLRD---PQLAYGPILTCFCMLSAYNSERHIRKEFVLRCNVTEDRKRRDDLLETMLPAHIKE 345
[Close]
BLAST of mRNA_H-paniculata_contig65.14338.1 vs. uniprot
Match: A0A397EQA6_9STRA (Uncharacterized protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EQA6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.770e-10
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   10 SLMFIVVVYHISGLRFIYANIVAWTHYLLLWVVMLGGFCCTLDFSSFFTQSAAIAPILMLLSMMSSNTGERQIRGDFVLRCNISMERARADEICTSMLPPHVSE 321
            SL++I ++++ SG+ FI +   AW H  L+  V L  +    D         A  PIL    M+S+   ER IR +FVLRCN++ +R R D++  +MLP H+ E
Sbjct:  251 SLIYISILFNASGMTFIMSTACAWFHISLMIAVPLTLY---RDHPQLQDPQLAYGPILTCFCMLSAYNSERHIRKEFVLRCNVTEDRKRRDDLLETMLPAHIKE 351
[Close]
BLAST of mRNA_H-paniculata_contig65.14338.1 vs. uniprot
Match: T0R275_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R275_SAPDV)

HSP 1 Score: 65.1 bits (157), Expect = 5.120e-10
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:    7 SSLMFIVVVYHISGLRFIYANIVAWTHYLLLWVVMLGGFCCTLDFSSFFTQSAAIAPILMLLSMMSSNTGERQIRGDFVLRCNISMERARADEICTSMLPPHVSE 321
            SSL+FI +++H +GL F  A + AW H LL+ +V    F      ++ +    A  P+L    M+S+   ER +R +FVLR N++ +R R D++  +MLP H+ E
Sbjct:  237 SSLLFIAMLFHSTGLMFRAACLCAWLHTLLMLIV---PFTIYSSNAAIWDPQIAFGPVLTAFCMVSTYHNERHVRLEFVLRYNVADDRKRRDDLLETMLPAHIKE 338
[Close]
BLAST of mRNA_H-paniculata_contig65.14338.1 vs. uniprot
Match: A0A662X4Q3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Q3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.150e-5
Identity = 32/106 (30.19%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:   10 SLMFIVVVYHISGLRFIYANIVAWTHYLLLWVVMLGGFC--CTLDFSSFFTQSAAIAPILMLLSMMSSNTGERQIRGDFVLRCNISMERARADEICTSMLPPHVSE 321
            +L++I+ V+ +SG+RF  A++ A  H +++ ++    FC  C LD         A   +++    +++  GER +R +FV R ++  ER R D++  +MLP H+ E
Sbjct:  273 TLLYILNVFIVSGMRFTVASVCALCH-IVVHLLFAVAFCRVCRLD-----DFETATGFVMVAFCTVTAYHGERYVRQEFVARMSVDEERKRRDDLLETMLPVHIKE 372
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65.14338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LDZ6_ECTSI1.830e-4171.96Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A485L1I4_9STRA2.020e-1034.62Aste57867_14452 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UGZ6_9STRA2.750e-1034.62Uncharacterized protein n=4 Tax=Aphanomyces invada... [more]
A0A397EQA6_9STRA2.770e-1036.54Uncharacterized protein n=11 Tax=Aphanomyces astac... [more]
T0R275_SAPDV5.120e-1036.19Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A662X4Q3_9STRA5.150e-530.19Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65contigH-paniculata_contig65:42651..44596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue9.8e-33
Seed eggNOG ortholog2880.D8LDZ6
KEGG rclassRC00295
KEGG koko:K01530,ko:K01769,ko:K11858
KEGG ReactionR00434
KEGG Pathwayko00230,map00230
Hectar predicted targeting categorysignal peptide
GOsGO:0000287,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004016,GO:0004383,GO:0004888,GO:0005034,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006171,GO:0006182,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007189,GO:0008074,GO:0008150,GO:0008152,GO:0008179,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009268,GO:0009410,GO:0009628,GO:0009653,GO:0009847,GO:0009893,GO:0009975,GO:0009987,GO:0010033,GO:0010243,GO:0010447,GO:0010562,GO:0010604,GO:0014070,GO:0014074,GO:0016020,GO:0016021,GO:0016829,GO:0016849,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0030104,GO:0030145,GO:0030154,GO:0030425,GO:0030435,GO:0031000,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031683,GO:0032268,GO:0032270,GO:0032502,GO:0032991,GO:0033554,GO:0033674,GO:0033993,GO:0034641,GO:0034654,GO:0035556,GO:0035690,GO:0036270,GO:0036477,GO:0038023,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043085,GO:0043167,GO:0043169,GO:0043279,GO:0043549,GO:0043934,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044445,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045121,GO:0045859,GO:0045860,GO:0045937,GO:0046058,GO:0046068,GO:0046390,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0052652,GO:0055086,GO:0060089,GO:0060255,GO:0061478,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071310,GO:0071396,GO:0071407,GO:0071470,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0097305,GO:0097306,GO:0097447,GO:0097458,GO:0098589,GO:0098805,GO:0098857,GO:0104004,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901698,GO:1901700,GO:1901701,GO:1904321,GO:1904322,GO:1904359,GO:1904360,GO:2000479,GO:2000481
EggNOG free text desc.guanylate cyclase activity
EggNOG OGsCOG2114@1,KOG1023@2759,KOG4171@2759
EC3.4.19.12,3.6.3.1,4.6.1.2
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons4
Model size321
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65.14338.1prot_H-paniculata_contig65.14338.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65 42651..44581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930759.7931602-CDS-H-paniculata_contig65:42650..426731622930759.7931602-CDS-H-paniculata_contig65:42650..42673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 42651..42673 -
1691481439.718463-CDS-H-paniculata_contig65:42650..426731691481439.718463-CDS-H-paniculata_contig65:42650..42673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 42651..42673 -
1622930759.809607-CDS-H-paniculata_contig65:42979..430911622930759.809607-CDS-H-paniculata_contig65:42979..43091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 42980..43091 -
1691481439.7338624-CDS-H-paniculata_contig65:42979..430911691481439.7338624-CDS-H-paniculata_contig65:42979..43091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 42980..43091 -
1622930759.8232703-CDS-H-paniculata_contig65:43384..435261622930759.8232703-CDS-H-paniculata_contig65:43384..43526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 43385..43526 -
1691481439.7464175-CDS-H-paniculata_contig65:43384..435261691481439.7464175-CDS-H-paniculata_contig65:43384..43526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 43385..43526 -
1622930759.8370025-CDS-H-paniculata_contig65:44552..445811622930759.8370025-CDS-H-paniculata_contig65:44552..44581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 44553..44581 -
1691481439.7549493-CDS-H-paniculata_contig65:44552..445811691481439.7549493-CDS-H-paniculata_contig65:44552..44581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 44553..44581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930759.8547215-UTR-H-paniculata_contig65:44581..445961622930759.8547215-UTR-H-paniculata_contig65:44581..44596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65 44582..44596 -
1691481439.7634194-UTR-H-paniculata_contig65:44581..445961691481439.7634194-UTR-H-paniculata_contig65:44581..44596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65 44582..44596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65.14338.1

>prot_H-paniculata_contig65.14338.1 ID=prot_H-paniculata_contig65.14338.1|Name=mRNA_H-paniculata_contig65.14338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MFIVVVYHISGLRFIYANIVAWTHYLLLWVVMLGGFCCTLDFSSFFTQSA
AIAPILMLLSMMSSNTGERQIRGDFVLRCNISMERARADEICTSMLPPHV
SE
back to top

mRNA from alignment at H-paniculata_contig65:42651..44596-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65.14338.1 ID=mRNA_H-paniculata_contig65.14338.1|Name=mRNA_H-paniculata_contig65.14338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1946bp|location=Sequence derived from alignment at H-paniculata_contig65:42651..44596- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCCCTCTTCCCTCATGTTCATCGTAGTGGTTTACCACATCAGGCATGC
AATAGTGGGAACGGACAGAATAGTGGAAATGGAGAGGACCGGGAAGGTTC
GATAGTACTCAAACGATGGGCCCGTCGACTGTGCTGTTAACACCTGCGCT
ATGCACATGAATCTGTTCCTCCGCGATGGATAACTATCGTTTAGATTTTT
TCCTTTGTTTCTGGGCCACAGTGGTGAACCATGGGCTACCTCACCAGCGG
TATCCCCTCTTCTTTACGTGGCGTATTGGCCTACCTAGAATGGGCATAGT
GTCCCTGTAGTGGGTGGAAATATATCACCTCCCGGTCACTTACGAGTGGA
GTATTTTCAGCCATCTCGAATCGTTATTATTTGTCTTGGGTGAACATGTA
TTTGTTATTTTACAAGTCTATGAATGATCATCTACAGGTGGTCATCAGGT
GGTCGTATACCCGGCGAACAGTGACATATGGAGGTTGTGTTTATTTTCCG
GGTGATATTGTACAGATTGAATACTCTATCTGCCCGAGCTTTTCGATGCT
CGATCGTATGTCGAGTCCACTGCATATTATTCGCGTCATATGGACATCTT
CCCCAACTCAAACAGGTGTAGTATTAATTGCAGATTTCTCGTATTTATTC
GTGTCTTCTTGTCGTACTTGTCCCGTGGGTGAAATAGTTCGTCGATGTCT
GTCTGACAAGTATATCCTTGGCATGAGTTCCTTGTGGAATCGTGCAGGAG
TGTGGTGGCCAGTATGTCGGCCCCAATGTATCGTATCAGTACTGGCTACA
CAATGATACTGTGGTAGAACGCGGTCGACCATACCTCGATAGTCGGAGAG
AAGGGCATCAGAAGGGAGATTTTCGTACTCTCGATACTTGCCCTCCAACT
TTCACCCTTCACTTTCTCAGGCAGCACTAGATCAAAATAGCGGTCACAGA
CTCAACATACTAGCCGTTGGTACTGCGCAATCGTTTTGGAGTATGCTGAT
GCTCCGCCCCCTCCTCGCTCGATCGTTTGTCACATCGACTTTCGACATTT
CGACGCCCGATATTATGCAGCGGTCTGAGGTTCATCTACGCAAATATCGT
GGCATGGACTCACTACCTCCTCCTGTGGGTGGTCATGCTCGGCGGCTTTT
GCTGCACACTCGACTTTAGCTCCTTTTTTACGCAGTCAGCGGCGATCGCG
CCCATCCTAATGGTGAGTGTAAGCTGTAAGGGTGTAATACCTTGACAACC
GATGGCATTACCCCATTTTTCGGAGACTGTTCAAGTGTTCTGTTCCATGA
GAGTAGGATGTGTGCGCAGTTTCTGTTTCACCGTATCATTTGCTATTCGG
GGGTACTCTGTACAGTACTCAATAAATGAAACCGTTCACCTCCCCCATGC
GCCTTCCCTCTCCCTGCGCTTGCCCACCCATGTGCATGTCCAGTCTGACA
TACGCATTTTTCGTGCTTTGTTACTTGTTCCCGAAACGTGCCGTTCCCAT
CCTAGCTGTTGTCGATGATGTCTTCAAATACTGGAGAAAGGCAGATTCGA
GGGGATTTCGTGCTGCGGTGCAACATTTCCATGGAGCGCGCGAGGGCCGA
CGAGATATGTACTTCAAGTGAGAGGCTTTCCAAGGGCATTTCACTGCCCG
ACAACAGATAACACAGATAACGCTCGATCTGTTAACCTCAGCAAACTTCA
GAAAAAGGAGAGTTGGAACAATGCTTTCGTCCCGTACAGTCTTCGCTGTT
TGTTGTTGTGCTGACTGTCAGAGGCATGTAATGTTTCTTGGTGTCTTAAT
GATCACTTCGAGACAAGCACGCTGCCAGTCTGCGATGGTTATACCTATTT
GCCGACCCTGATTGTAGCCCCCCCCCGCTTACCCTCCCCCGCCACTGTGA
ACAAAACAAACATGGCTCACAAGTGCTTCCGCCGCATGTCTCCGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig65:42651..44596-

>mRNA_H-paniculata_contig65.14338.1 ID=mRNA_H-paniculata_contig65.14338.1|Name=mRNA_H-paniculata_contig65.14338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig65:42651..44596- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCATCGTAGTGGTTTACCACATCAGATGTTCATCGTAGTGGTTTAC
CACATCAGCGGTCTGAGGTTCATCTACGCAAATATCGTGGCATGGACTCA
CTACCTCCTCCTGTGGGTGGTCATGCTCGGCGGCTTTTGCTGCACACTCG
ACTTTAGCTCCTTTTTTACGCAGTCAGCGGCGATCGCGCCCATCCTAATG
CGGTCTGAGGTTCATCTACGCAAATATCGTGGCATGGACTCACTACCTCC
TCCTGTGGGTGGTCATGCTCGGCGGCTTTTGCTGCACACTCGACTTTAGC
TCCTTTTTTACGCAGTCAGCGGCGATCGCGCCCATCCTAATGCTGTTGTC
GATGATGTCTTCAAATACTGGAGAAAGGCAGATTCGAGGGGATTTCGTGC
TGCGGTGCAACATTTCCATGGAGCGCGCGAGGGCCGACGAGATATGTACT
TCAACTGTTGTCGATGATGTCTTCAAATACTGGAGAAAGGCAGATTCGAG
GGGATTTCGTGCTGCGGTGCAACATTTCCATGGAGCGCGCGAGGGCCGAC
GAGATATGTACTTCAATGCTTCCGCCGCATGTCTCCGAGTGCTTCCGCCG
CATGTCTCCGAG
back to top