mRNA_H-paniculata_contig6474.14300.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: A0A6H5JAK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAK5_9PHAE) HSP 1 Score: 286 bits (733), Expect = 4.820e-85 Identity = 150/250 (60.00%), Postives = 193/250 (77.20%), Query Frame = 2
Query: 326 MVTLVIIFIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLLAFLMGLSMSMVTFVLGATIAFLLSRSVLPPACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAGMVISSIKYLDTMFSHTDTLWYCIYAAFGVVCIVSCVALVRYTAAEMKAAVADAPQSPDGGDGSGASQVGCRGDDEDDFGPLDEERATLFGTFVSREAGGGGEGG 1075
M+ ++IFI+FGA+++V LLPQT LFL AGY C+ R+ N LAF + L++S+VTF++GA+IAFLL+RSVLPP+CTRKFF+H + GLDHAL+H GRRI LLR+NP+ PYNALNYGLGL+SCT YL GM+GA PFTC+AVYAGM+ISS+ +D++F++T T WYC+YAA GV C+VS VA+VRYT+AEMKAAV AP+ P GGD R D E++FG L + +T+FGTF SR GGE G
Sbjct: 1 MLAFIVIFIVFGALSIVMLLPQTVLFLAAGYACADRLRNQYLAFAVALNLSLVTFIIGASIAFLLARSVLPPSCTRKFFKHFAILEGLDHALQHKGRRIIFLLRINPMSPYNALNYGLGLSSCTFRAYLQGMVGAFPFTCIAVYAGMLISSVDDIDSLFTYTSTGWYCVYAALGVACVVSFVAIVRYTSAEMKAAVRSAPR-PAGGD---------RVDGEEEFGELPPD-STMFGTFTSRSECYGGEEG 239
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: A0A7S2PYG7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PYG7_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.280e-16 Identity = 56/188 (29.79%), Postives = 105/188 (55.85%), Query Frame = 2
Query: 200 WPQIIFCVVLLAALVGTTIDLLTQCYVLRFTEKLLSWMDGKDMVTLVIIFIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLLAFLMGLSMSMVTFVLGATIAFLLSRSVLPPACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAG 763
W +I+ +L+ + ID LT Y+ ++ L+W++ ++V V F+ +A V +P + L LG+G++ S + L +++ V LG+ AFLL R ++ R+ + V +D AL++NG +I +LLR++P++P+NA+NY G+T +L DY++ ++G +P T + + G
Sbjct: 43 WGKILVATILIGIVTFVIIDSLTTKYISTGFQEFLTWIES-NLVAGVFAFMGVYFIATVCFVPGSLLTLGSGFVFGSAVGVGYGVVLASIAV-FVGASLGSIAAFLLGRYLMRDCVRRRLVKKYPVIEAIDEALQNNGLKIFLLLRLSPIVPFNAINYIAGVTGISLKDYVIALIGILPGTILYCFIG 228
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.040e-15 Identity = 87/294 (29.59%), Postives = 137/294 (46.60%), Query Frame = 2
Query: 206 QIIFCVVLLAALVGTTIDLLTQCYVLRFTEKLLSWMDGKDMVTLVIIFIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLLAFLMGLSMSMVTFVLGATIAFLLSRSVLPPACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAGMVISSIKYLDTMFSHTDTLWYCIYAAFGVV-CIVSCVALVRYTAAEMKA---------AVADAPQSPDGGDGSGASQVGCRG--DDEDDFGPLDEERATLFGTFVSRE 1051
+I F ++L+ ++ IDL T +R L W++ V FI +A + +P L LGAG++ ++ + + FL +++ F GA +FL+ R +L C K + +F +D AL+ G RI ILLRV+PL+P+N NY G+TS +L DY +GM+G +P T + + G S+ +D+ S D+ I G+V ++ A Y E+ A A D +G GAS +G DEDD E A T+ + E
Sbjct: 29 KIGFGLILVGFIIYVIIDLATTKNTMRIVADFLDWIEDNPAAG-VFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFF-GACASFLIGRYLLRD-CVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSL--VDSSSSGNDSTVRIISIVLGIVFAVLGVYATTYYAKKELNKILSQRREVNAAASTEGDVDSSNGKGASTIGNDSVTTDEDDV-EAQSETAKEGDTYKNEE 316
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: B7GDD3_PHATC (Predicted protein n=3 Tax=Sar TaxID=2698737 RepID=B7GDD3_PHATC) HSP 1 Score: 88.6 bits (218), Expect = 2.810e-15 Identity = 61/207 (29.47%), Postives = 113/207 (54.59%), Query Frame = 2
Query: 197 TWPQIIFCVVLLAALVGTTIDLLTQCYVLRFTEKLLSWMDGKDMVTLVIIFIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLLAFLMGLSMSMVTFVLGATIAFLLSRSVLPPACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAGMVISSIKYLDTMFSHTDT 817
T +++ ++LL + +D LT YV + L W++ ++ V + +F++ A + +P + L LGAG++ +S L ++G+ + LGAT +F + R +L T K + VF LD AL+ NG +I +LLR++P++P+NA+NY G+T+ ++ DY++ + +P T + V+ G S+ D+ S D+
Sbjct: 20 TTIKLVIGLLLLGFVAFVILDSLTNRYVRDGIDSFLDWIE-ENSVEGIFLFVLVYFAATILFIPGSILTLGAGFVFASSFGLGL-GLVIGVFAVFLGASLGATASFFIGRYLLRDQAT-KLTKKYAVFEALDVALQENGLKILVLLRLSPIVPFNAINYICGVTAVSIRDYILALFAILPGTTLYVFLGASAGSLS--DSASSGDDS 221
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: A0A1Q7N443_9BACT (TVP38/TMEM64 family membrane protein n=4 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1Q7N443_9BACT) HSP 1 Score: 85.5 bits (210), Expect = 9.650e-15 Identity = 56/143 (39.16%), Postives = 82/143 (57.34%), Query Frame = 2
Query: 341 IIFIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLLAFLMGLSMSMVTFVLGATIAFLLSRSVLPPACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAGMV 769
I+FI+ A+AVVAL+P + L + G +L L G ++ LG+T AFLL R V A + R +V +D A+ GRRI +LLR++PL+P+N LNY LGLT+ +LGD+L+ +G IP + Y G +
Sbjct: 59 IVFILIYAIAVVALIPASLLTIAGG---------ALFGVLHGTLYAVTGAALGSTSAFLLGRHVARRAIAHRLARLPRVA-AIDRAVSVQGRRIVLLLRLSPLVPFNVLNYALGLTTISLGDFLLASVGMIPGAFMYAYCGKI 191
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.540e-14 Identity = 65/207 (31.40%), Postives = 110/207 (53.14%), Query Frame = 2
Query: 206 QIIFCVVLLAALVGTTIDLLTQCYVLRFTEKLLSWMDGKDMVTLVIIFIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLLAFLMGLSMSMVTFVLGATIAFLLSRSVLPP---ACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAGMVISSIKYLDTMFSHTDT 817
+++ +VL+ +V ID T Y+ + L W++ + + ++ +A V +P L LGAGY+ S+ L F+ +S+ V LG+ +AFL+SR +L T KF +F +D AL G +I ILLR++P++P+NALNY G+T+ + DY + + +P T + V+ G +S + L T+ S TD+
Sbjct: 18 KLVLALVLIGFIVFVIIDSTTNGYIKDGIQTFLRWIEENPIEGFFMFMGVY-VLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISV-FVGASLGSMLAFLISRYILREWAVGLTEKF----PIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLG---ASAQSLATIGSSTDS 215
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: UPI0019D41DDF (TVP38/TMEM64 family protein n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI0019D41DDF) HSP 1 Score: 83.2 bits (204), Expect = 2.910e-14 Identity = 52/151 (34.44%), Postives = 87/151 (57.62%), Query Frame = 2
Query: 347 FIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLLAFLMGLSMSMVTFVLGATIAFLLSRSVLPPACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAGMVISSIKYLDTM 799
F++ ++A VA +P + L LGAG ++ L G + +GAT+AFL+ R + +RK + + F +D A+ +G +I +L R++P++P+N LNYGLG+T +L DY++G +G IP T + VY G + S+ L T+
Sbjct: 19 FVLVYSLATVAFVPGSLLTLGAG---------AVFGLLWGSVWVFLGATIGATLAFLIGRYGVRGWVSRKIANYPR-FQAIDRAVSQSGLKIVLLARLSPVIPFNLLNYGLGITGVSLKDYVLGSVGMIPGTVLYVYLGSIAGSLANLGTV 159
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: A0A843T7A3_9BACT (TVP38/TMEM64 family membrane protein n=1 Tax=Gemmatimonas sp. TaxID=1962908 RepID=A0A843T7A3_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 6.680e-14 Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query: 341 IIFIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLLAFLMGLSMSMVTFVLGATIAFLLSRSVLPPACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAGMVISSIKYL 790
I+F++ A A VA +P + L L AG ++ G+++ + VLG+++AFLL+R P + + F+ +D A+ GR+I LLR++PL+PYN LNY LGLT DYL+ +G +P T + VY+G VI + L
Sbjct: 74 ILFVLGYAAATVAFVPGSLLTLAAG---------AVFGVARGVTLVFLGAVLGSSLAFLLARHAARPLVESRIANDSR-FDRIDRAVARRGRKIVFLLRLSPLLPYNLLNYALGLTRVRFPDYLLASIGMLPGTLLYVYSGRVIGDLAAL 213
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: A0A6C1NRM9_9BACT (TVP38/TMEM64 family membrane protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A6C1NRM9_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 7.970e-14 Identity = 59/166 (35.54%), Postives = 85/166 (51.20%), Query Frame = 2
Query: 284 RFTEKLLSWMDGKDMVTLVIIFIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLLAFLMGLSMSMVTFVLGATIAFLLSRSVLPPACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAGMVISSI 781
++ E W+DG + I+FI AVA VA +P + L L AG ++ G+ VLG+T AFL+ R + K + F+ +D A+ G +I LLR+ P+MPYN LNY LGLT L DY++G +G +P T + VY+G V I
Sbjct: 70 QYIEAFALWVDGLGALA-PIVFIAGYAVATVAFIPGSILTLAAG---------AVFGITQGVLYVFAGAVLGSTAAFLVGRHLARDRIRAKVSEDPR-FSAIDRAIGREGLKIVTLLRLTPVMPYNLLNYALGLTDVRLRDYVIGALGMLPGTLLYVYSGRVAGDI 224
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Match: A0A7S2E6M1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6M1_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 2.090e-13 Identity = 59/183 (32.24%), Postives = 98/183 (53.55%), Query Frame = 2
Query: 239 LVGTTIDLLTQC-YVLRFTEKLLSWMDGKDMVTLVIIFIIFGAVAVVALLPQTFLFLGAGYLCSSRIDNSLL-AFLMGLSMSMVTFVLGATIAFLLSRSVLPPACTRKFFRHIKVFNGLDHALRHNGRRINILLRVNPLMPYNALNYGLGLTSCTLGDYLMGMMGAIPFTCVAVYAGMVISSI 781
LV IDL T ++ + + LLSWM+ V++FI+ A+ V +P L +G G+ D SL A ++ + + LG+ +AFLL R + C + +F +D AL HNG +I ILLR++PL+PYNAL++ G+TS ++ Y + ++G +P + + G S++
Sbjct: 101 LVLVIIDLSTSSQHIQHWLKDLLSWMEFHPYAG-VLVFILVYALCTVLFIPGAILTIGCGFTFGYVHDTSLTKAVIIASTTVFLGASLGSIMAFLLGRYLFRD-CVLNMAKEYPMFEAVDRALEHNGIKIMILLRLSPLIPYNALDFMSGITSISIASYSIALLGVLPGVVLYTFIGATASTL 281 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6474.14300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6474.14300.1 >prot_H-paniculata_contig6474.14300.1 ID=prot_H-paniculata_contig6474.14300.1|Name=mRNA_H-paniculata_contig6474.14300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=369bp MRTSSNCRRGLRLGYGDVYATWPQIIFCVVLLAALVGTTIDLLTQCYVLRback to top mRNA from alignment at H-paniculata_contig6474:3710..12125+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6474.14300.1 ID=mRNA_H-paniculata_contig6474.14300.1|Name=mRNA_H-paniculata_contig6474.14300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8416bp|location=Sequence derived from alignment at H-paniculata_contig6474:3710..12125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6474:3710..12125+ >mRNA_H-paniculata_contig6474.14300.1 ID=mRNA_H-paniculata_contig6474.14300.1|Name=mRNA_H-paniculata_contig6474.14300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2214bp|location=Sequence derived from alignment at H-paniculata_contig6474:3710..12125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |