mRNA_H-paniculata_contig6472.14299.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A438H3Q3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H3Q3_VITVI) HSP 1 Score: 127 bits (320), Expect = 7.090e-30 Identity = 74/209 (35.41%), Postives = 114/209 (54.55%), Query Frame = 2
Query: 575 RNYLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETS-RIRAMSGAPALSIGDEPKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCGRQGCGLSMEEYTGSDFGACLDTRRSVSGRVVMLAKGAISWHSRVQEIAAWGTLEAEDVAVSESVN 1198
+ +L +F++ DLG+A F + H+ R+R L L Q Y+ + + + R ++ S+ PK EK+++ +FPY A+G+LM TRP IA V ++ R NPG H K +++QYL T + +T R+ L + Y+ SDF CLD++RS SG + MLA GA+SW S Q + A T+EAE +A E+ N
Sbjct: 105 KRFLSSKFDMKDLGNASFVLGIHIHRDRSRGILGLSQKAYIDKVLSRFGMSNCAPRDTPVAKGNKFSLHQCPKNELEKKDMERFPYASAIGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMQYLQRTKDYMLTY-RRSSHLEIVGYSDSDFARCLDSKRSTSGYIFMLAGGAVSWKSVKQTLIASSTMEAEFIACYEASN 312
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A6A3IVK9_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IVK9_9STRA) HSP 1 Score: 125 bits (314), Expect = 9.270e-30 Identity = 74/218 (33.94%), Postives = 119/218 (54.59%), Query Frame = 2
Query: 572 IRNYLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETSRIRAMSG-APALSIGDEPKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCG-----RQGCGLSMEEYTGSDFGACLDTRRSVSGRVVML-AKGAISWHSRVQEIAAWGTLEAEDVAVSESVNDV 1204
+++ L+ RF + DLG + + +H+ R R R + + Q Y + ++ + +R+ + LS D P+T EEK+ + KFPY EAVG+ M TRP +A +R V+R +NPGP H +++ ++YL T GIT G + ++ Y+ +D+ +DTRRSVSG V L ISW S +Q++ T EAE VA++ +V +V
Sbjct: 46 MKDILKRRFQMADLGGVSYPLGWHIERRRSERIIFVHQEKYATKVLDRFGLAQCRPVRSPEETSQKLSESDFPQTEEEKQNMEKFPYREAVGSFMYLMMGTRPDLANFIRQVSRYLQNPGPHHWNYVVRGLKYLNGTRNFGITLGARDVTKASLAHALSAYSDADYANSVDTRRSVSGYVTYLFGNSPISWRSSLQKLVTLATTEAEYVALASTVQEV 263
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A151QLV5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QLV5_CAJCA) HSP 1 Score: 127 bits (320), Expect = 2.840e-29 Identity = 75/210 (35.71%), Postives = 113/210 (53.81%), Query Frame = 2
Query: 572 IRNYLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETS-RIRAMSGAPALSIGDEPKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCGRQGCGLSMEEYTGSDFGACLDTRRSVSGRVVMLAKGAISWHSRVQEIAAWGTLEAEDVAVSESVN 1198
++ +L F++ D+G+A + + + R R L L Q Y+ + E+ ++ S + + L + PK E+E + PY AVG+LM TRP IA AV V+ R NPG H KA K+++YL T + + R+ L + Y+ SDF C+DTR+S SG V MLA GA+SW SR Q + A T+EAE V+ E+ +
Sbjct: 117 VKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKGDKLELSQCPKNNLEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKD-FMLIYRRTDSLEVIGYSDSDFAGCIDTRKSTSGYVFMLACGAVSWSSRKQTLTATSTMEAEFVSCFEATS 325
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A2N9GE28_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GE28_FAGSY) HSP 1 Score: 129 bits (323), Expect = 1.350e-28 Identity = 74/217 (34.10%), Postives = 119/217 (54.84%), Query Frame = 2
Query: 563 DGVIRNYLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETSRIRA-MSGAPALSIGDEPKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCGRQGCGLSMEEYTGSDFGACLDTRRSVSGRVVMLAKGAISWHSRVQEIAAWGTLEAEDVAVSESVNDVMF 1210
D + R ++ F + D+G+A F + +TR+R + L L Q Y++ + E+ + I M LS+ PK EEK +++K PY A+G+LM TRP I AV +V+R NPGPAH +A+ +I++YL T + + G L + Y+ +D+ + D R+S SG +L GA+SW S+ Q A T+E+E VA S +V + ++
Sbjct: 843 DSIPRVHITSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY--HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVW 1057
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A2N9GPY6_FAGSY (Uncharacterized protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GPY6_FAGSY) HSP 1 Score: 128 bits (322), Expect = 1.970e-28 Identity = 73/215 (33.95%), Postives = 118/215 (54.88%), Query Frame = 2
Query: 569 VIRNYLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETSRIRA-MSGAPALSIGDEPKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCGRQGCGLSMEEYTGSDFGACLDTRRSVSGRVVMLAKGAISWHSRVQEIAAWGTLEAEDVAVSESVNDVMF 1210
+ +L F + D+G+A F + +TR+R + L L Q Y++ + E+ + I M LS+ PK EEK +++K PY A+G+LM TRP I AV +V+R NPGPAH +A+ +I++YL T++ + G L + Y+ +D+ + D R+S SG +L GA+SW S+ Q A T+E+E VA S +V + ++
Sbjct: 1186 TTKKWLSSTFEMKDIGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKMPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTIDHALCY--HGEDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVW 1398
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY) HSP 1 Score: 127 bits (320), Expect = 2.830e-28 Identity = 78/214 (36.45%), Postives = 118/214 (55.14%), Query Frame = 2
Query: 572 IRNYLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETSR-IRAMSGAPALSIGDEPKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCGRQGCGLSMEEYTGSDFGACLDTRRSVSGRVVMLAKGAISWHSRVQEIAAWGTLEAEDVAVSESVNDVMF 1210
I+ +L F + DLG+A + + + R+RK R L L Q Y+ + + +++ + LS PKT EE+E++ PY AVG+LM TRP I AV +V+R NPGP H A+ I++YL T + G + L+++ YT SDF + +D R+S+SG V L KGAISW S Q+ A T+EAE +A SE+ + ++
Sbjct: 528 IKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVHLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTIEAEYIAASEAAKEAVW 739
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A2N9H9J3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H9J3_FAGSY) HSP 1 Score: 127 bits (320), Expect = 2.900e-28 Identity = 73/215 (33.95%), Postives = 117/215 (54.42%), Query Frame = 2
Query: 569 VIRNYLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETSRIRA-MSGAPALSIGDEPKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCGRQGCGLSMEEYTGSDFGACLDTRRSVSGRVVMLAKGAISWHSRVQEIAAWGTLEAEDVAVSESVNDVMF 1210
+ +L F + D+G+A F + +TR+R + L L Q Y++ + E+ + I M LS+ PK EEK +++K PY A+G+LM TRP I AV +V+R NPGPAH +A+ +I++YL T + + G L + Y+ +D+ + D R+S SG +L GA+SW S+ Q A T+E+E VA S +V + ++
Sbjct: 564 TTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY--HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVW 776
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI) HSP 1 Score: 126 bits (316), Expect = 2.910e-28 Identity = 83/226 (36.73%), Postives = 123/226 (54.42%), Query Frame = 2
Query: 560 DDGVIRN---YLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETSRIRAMSGAPALSIGDE------PKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCGRQGCGLSMEEYTGSDFGACLDTRRSVSGRVVMLAKGAISWHSRVQEIAAWGTLEAEDVAVSESVNDVMF 1210
D G++R YL F++ D+G+A + +S + R+R L L Q Y+ + E+ + S SG + GD+ P+ E+E++ K PY AVG+LM T TRP I+ AV ++ R +PG H KA K+++YL T + +T R L + Y+ SD+G CLD+ +S SG V MLA GAISW S Q I A T+EAE VA E+ + ++
Sbjct: 200 DLGLLRETKEYLSKNFHMVDMGEANYVISIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCS-----SGIAPILKGDKLSKMQCPRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSE-QLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALW 419
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A2N9F135_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F135_FAGSY) HSP 1 Score: 127 bits (320), Expect = 3.040e-28 Identity = 73/215 (33.95%), Postives = 117/215 (54.42%), Query Frame = 2
Query: 569 VIRNYLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETSRIRA-MSGAPALSIGDEPKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCGRQGCGLSMEEYTGSDFGACLDTRRSVSGRVVMLAKGAISWHSRVQEIAAWGTLEAEDVAVSESVNDVMF 1210
+ +L F + D+G+A F + +TR+R + L L Q Y++ + E+ + I M LS+ PK EEK +++K PY A+G+LM TRP I AV +V+R NPGPAH +A+ +I++YL T + + G L + Y+ +D+ + D R+S SG +L GA+SW S+ Q A T+E+E VA S +V + ++
Sbjct: 644 TTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY--HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVW 856
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Match: A0A2N9HQ47_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HQ47_FAGSY) HSP 1 Score: 127 bits (320), Expect = 3.210e-28 Identity = 73/215 (33.95%), Postives = 117/215 (54.42%), Query Frame = 2
Query: 569 VIRNYLRGRFNLTDLGDAEFYMSYHVTRNRKARELKLDQHIYVQSMAEKIRCRETSRIRA-MSGAPALSIGDEPKTPEEKEEVTKFPYGEAVGALMRTATMTRPGIACAVRVVARSCENPGPAHKKAMIKIVQYLLHTME*GITCGRQGCGLSMEEYTGSDFGACLDTRRSVSGRVVMLAKGAISWHSRVQEIAAWGTLEAEDVAVSESVNDVMF 1210
+ +L F + D+G+A F + +TR+R + L L Q Y++ + E+ + I M LS+ PK EEK +++K PY A+G+LM TRP I AV +V+R NPGPAH +A+ +I++YL T + + G L + Y+ +D+ + D R+S SG +L GA+SW S+ Q A T+E+E VA S +V + ++
Sbjct: 766 TTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY--HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVW 978 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6472.14299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6472.14299.1 >prot_H-paniculata_contig6472.14299.1 ID=prot_H-paniculata_contig6472.14299.1|Name=mRNA_H-paniculata_contig6472.14299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp MLEYQVLRRHDGNLVRAVKDRPVHVQEGRRRRGGNGGGREHGQHSCPRKGback to top mRNA from alignment at H-paniculata_contig6472:3602..4811+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6472.14299.1 ID=mRNA_H-paniculata_contig6472.14299.1|Name=mRNA_H-paniculata_contig6472.14299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-paniculata_contig6472:3602..4811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6472:3602..4811+ >mRNA_H-paniculata_contig6472.14299.1 ID=mRNA_H-paniculata_contig6472.14299.1|Name=mRNA_H-paniculata_contig6472.14299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig6472:3602..4811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |