mRNA_H-paniculata_contig64559.14280.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig64559.14280.1
Unique NamemRNA_H-paniculata_contig64559.14280.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig64559.14280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig64559contigH-paniculata_contig64559:370..795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930751.4892006-CDS-H-paniculata_contig64559:369..7951622930751.4892006-CDS-H-paniculata_contig64559:369..795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64559 370..795 -
1691481436.2002864-CDS-H-paniculata_contig64559:369..7951691481436.2002864-CDS-H-paniculata_contig64559:369..795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64559 370..795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig64559.14280.1prot_H-paniculata_contig64559.14280.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig64559 370..795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig64559.14280.1

>prot_H-paniculata_contig64559.14280.1 ID=prot_H-paniculata_contig64559.14280.1|Name=mRNA_H-paniculata_contig64559.14280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
SSFHQHTVICDNGATKHMTHDSDFLFVYQQCNGHVRLADGNRLPIEGDGM
LFLQFRFDSEVVLTKLTQVAFVPLLSHHLLSLGKIADFGHEYRCSREGLR
INLKTGRVLSAKRFGSLDVMQGLRVCPEDSALATIAPSRLPI
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mRNA from alignment at H-paniculata_contig64559:370..795-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig64559.14280.1 ID=mRNA_H-paniculata_contig64559.14280.1|Name=mRNA_H-paniculata_contig64559.14280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig64559:370..795- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTCATTTCACCAACATACTGTTATATGTGATAATGGTGCAACGAAACA
CATGACCCACGATTCAGATTTTCTTTTTGTTTATCAGCAATGTAATGGGC
ATGTACGCCTTGCAGATGGCAACCGTCTCCCGATCGAAGGAGATGGCATG
CTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTGACGAAGTTAAC
TCAGGTTGCATTCGTACCACTCCTCAGTCATCACCTCCTATCTCTCGGGA
AAATCGCGGACTTTGGTCATGAATATAGGTGTTCCCGCGAAGGGCTCAGA
ATTAACCTTAAAACAGGGAGAGTTCTGAGTGCTAAGCGATTTGGTAGCCT
TGACGTGATGCAAGGGTTGCGAGTTTGTCCCGAAGATAGTGCGCTTGCAA
CGATAGCCCCGTCCCGCCTGCCGATA
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Coding sequence (CDS) from alignment at H-paniculata_contig64559:370..795-

>mRNA_H-paniculata_contig64559.14280.1 ID=mRNA_H-paniculata_contig64559.14280.1|Name=mRNA_H-paniculata_contig64559.14280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig64559:370..795- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTCATTTCACCAACATACTGTTATATGTGATAATGGTGCAACGAAACA
CATGACCCACGATTCAGATTTTCTTTTTGTTTATCAGCAATGTAATGGGC
ATGTACGCCTTGCAGATGGCAACCGTCTCCCGATCGAAGGAGATGGCATG
CTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTGACGAAGTTAAC
TCAGGTTGCATTCGTACCACTCCTCAGTCATCACCTCCTATCTCTCGGGA
AAATCGCGGACTTTGGTCATGAATATAGGTGTTCCCGCGAAGGGCTCAGA
ATTAACCTTAAAACAGGGAGAGTTCTGAGTGCTAAGCGATTTGGTAGCCT
TGACGTGATGCAAGGGTTGCGAGTTTGTCCCGAAGATAGTGCGCTTGCAA
CGATAGCCCCGTCCCGCCTGCCGATATCCTCATTTCACCAACATACTGTT
ATATGTGATAATGGTGCAACGAAACACATGACCCACGATTCAGATTTTCT
TTTTGTTTATCAGCAATGTAATGGGCATGTACGCCTTGCAGATGGCAACC
GTCTCCCGATCGAAGGAGATGGCATGCTGTTCCTTCAATTTCGATTTGAC
TCCGAGGTTGTTTTGACGAAGTTAACTCAGGTTGCATTCGTACCACTCCT
CAGTCATCACCTCCTATCTCTCGGGAAAATCGCGGACTTTGGTCATGAAT
ATAGGTGTTCCCGCGAAGGGCTCAGAATTAACCTTAAAACAGGGAGAGTT
CTGAGTGCTAAGCGATTTGGTAGCCTTGACGTGATGCAAGGGTTGCGAGT
TTGTCCCGAAGATAGTGCGCTTGCAACGATAGCCCCGTCCCGCCTGCCGA
TA
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