mRNA_H-paniculata_contig63909.14197.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63909.14197.1
Unique NamemRNA_H-paniculata_contig63909.14197.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.350e-12
Identity = 33/55 (60.00%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    7 AVRQIVEAAGQRPQDFALHSLRVGEATSLAAGGDNMSETVLKREGRWRSDTVRRY 171
            A+R+IVE +G+ P+DFALHSLR+G A++LAAGG  +SE V++REGRW+SD  + Y
Sbjct:  371 ALREIVERSGRNPKDFALHSLRIGGASTLAAGGA-VSERVIQREGRWKSDAYKVY 424          
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: A0A6H5K297_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K297_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.770e-10
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 TDAVRQIVEAAGQRPQDFALHSLRVGEATSLAAGGDNMSETVLKREGRWRSDT 159
            T A+RQ+V  AG +P+++ALHSLR+G AT LAAGG   S  VL+REGRW  ++
Sbjct:   36 TVALRQVVALAGLQPEEYALHSLRIGGATFLAAGG--ASPEVLRREGRWSGES 86          
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: A0A6H5KE53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE53_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.570e-9
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 TDAVRQIVEAAGQRPQDFALHSLRVGEATSLAAGGDNMSETVLKREGRWRSDT 159
            T A+RQ+V  AG +P+++ALHSLR+G AT LAA G   S  VL+REGRW  ++
Sbjct:   38 TVALRQVVALAGLQPEEYALHSLRIGGATFLAAEG--ASPEVLRREGRWSGES 88          
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.320e-8
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    7 AVRQIVEAAGQRPQDFALHSLRVGEATSLAAGGDNMSETVLKREGRWR--SDTVRRYCR 177
            A+RQIV+ AG  P+   LHSLR+G AT+LAAGGD + + +++ EGRW+  S T + Y R
Sbjct:  834 ALRQIVDKAGGDPKQVGLHSLRIGAATTLAAGGD-VPDRIIQSEGRWKEASGTFKIYTR 891          
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: G5A872_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A872_PHYSP)

HSP 1 Score: 53.9 bits (128), Expect = 5.560e-8
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    4 DAVRQIVEAAGQ---RPQDFALHSLRVGEATSLA-AGGDNMSETVLKREGRWRSDTVRRYCRVTRKI 192
            D VR I  AAG+    PQD+A HSLR G AT+L  AG D+++   +K  GRW+SD V RY R++ ++
Sbjct:    1 DVVRAIKPAAGRAGHNPQDYASHSLRSGSATALFNAGFDSLA---VKLFGRWKSDAVERYTRISGQL 64          
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.050e-7
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   16 QIVEAAGQRPQDFALHSLRVGEATSLAAGGDNMSETVLKREGRWR--SDTVRRYCR 177
            QIVE AG  P+   LHSLR+G AT+LAAGGD + + +++ EGRW+  S T + Y R
Sbjct:  218 QIVEKAGGNPKQVGLHSLRIGAATTLAAGGD-VPDRIIQGEGRWKEGSGTFKIYTR 272          
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: G4ZHH4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZHH4_PHYSP)

HSP 1 Score: 53.9 bits (128), Expect = 8.020e-7
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 TDAVRQIVEAAGQ---RPQDFALHSLRVGEATSL-AAGGDNMSETVLKREGRWRSDTVRRYCRVTRKI 192
            +D VR I  AAG+    PQD+A HSLR G AT+L  AG D+++   +K  GRW+SD V RY R++ ++
Sbjct:  221 SDVVRAIKAAAGRAGHNPQDYASHSLRSGGATALFIAGFDSLA---VKLFGRWKSDAVERYTRISGQL 285          
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: G4ZEH1_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZEH1_PHYSP)

HSP 1 Score: 53.5 bits (127), Expect = 1.180e-6
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 TDAVRQIVEAAGQ---RPQDFALHSLRVGEATSLA-AGGDNMSETVLKREGRWRSDTVRRYCRVTRKI 192
            +D VR I  AAG+    PQD+A HSLR G AT+L  AG D+++   +K  GRW+SD V RY R++ ++
Sbjct:  264 SDVVRAIKAAAGRAGHNPQDYASHSLRSGGATALFNAGFDSLA---VKLFGRWKSDAVERYTRISGQL 328          
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: G5A4S5_PHYSP (Uncharacterized protein (Fragment) n=3 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A4S5_PHYSP)

HSP 1 Score: 47.8 bits (112), Expect = 1.350e-5
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    7 AVRQIVEAAGQRPQDFALHSLRVGEATSLA-AGGDNMSETVLKREGRWRSDTVRRYCRVTRKI 192
            A++   E  G  P  +  HSLR G A++L  AG D++   V+K  GRWRSD V RY R++ ++
Sbjct:    5 ALKHAAELIGHEPDSYGSHSLRSGGASALFNAGYDSL---VIKLFGRWRSDAVERYTRMSSQL 64          
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Match: W2KYM1_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KYM1_PHYPR)

HSP 1 Score: 49.7 bits (117), Expect = 2.600e-5
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    7 AVRQIVEAAGQRPQDFALHSLRVGEATSLAAGG-DNMSETVLKREGRWRSDTVRRYCRVTRKI 192
            A+++I   AG  P+ +A HS+R+G AT+L AGG D +S  +L   GRW SD    Y R + K+
Sbjct:  223 ALKRIAVRAGVSPRAYATHSIRIGGATALVAGGADRLSIKLL---GRWASDCFEEYPRQSAKV 282          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63909.14197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KCI7_9PHAE2.350e-1260.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K297_9PHAE5.770e-1056.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE53_9PHAE9.570e-954.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTP7_9PHAE5.320e-850.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G5A872_PHYSP5.560e-847.76Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6H5K718_9PHAE3.050e-751.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G4ZHH4_PHYSP8.020e-747.06Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
G4ZEH1_PHYSP1.180e-647.06Uncharacterized protein n=2 Tax=Phytophthora sojae... [more]
G5A4S5_PHYSP1.350e-541.27Uncharacterized protein (Fragment) n=3 Tax=Phytoph... [more]
W2KYM1_PHYPR2.600e-542.86Uncharacterized protein n=2 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63909contigH-paniculata_contig63909:148..345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930739.6240683-CDS-H-paniculata_contig63909:147..3451622930739.6240683-CDS-H-paniculata_contig63909:147..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63909 148..345 +
1691481430.779932-CDS-H-paniculata_contig63909:147..3451691481430.779932-CDS-H-paniculata_contig63909:147..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63909 148..345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63909.14197.1prot_H-paniculata_contig63909.14197.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63909 148..345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63909.14197.1

>prot_H-paniculata_contig63909.14197.1 ID=prot_H-paniculata_contig63909.14197.1|Name=mRNA_H-paniculata_contig63909.14197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
TDAVRQIVEAAGQRPQDFALHSLRVGEATSLAAGGDNMSETVLKREGRWR
SDTVRRYCRVTRKIP*
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mRNA from alignment at H-paniculata_contig63909:148..345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63909.14197.1 ID=mRNA_H-paniculata_contig63909.14197.1|Name=mRNA_H-paniculata_contig63909.14197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig63909:148..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGATGCCGTGCGGCAAATAGTGGAAGCCGCGGGACAAAGACCACAGGA CTTTGCACTGCATTCGTTGAGAGTTGGGGAAGCAACGAGTCTCGCTGCGG GTGGTGATAACATGTCGGAGACAGTTCTGAAACGAGAAGGTAGATGGCGA TCAGATACAGTCAGGCGATATTGTCGCGTAACGCGGAAGATCCCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig63909:148..345+

>mRNA_H-paniculata_contig63909.14197.1 ID=mRNA_H-paniculata_contig63909.14197.1|Name=mRNA_H-paniculata_contig63909.14197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig63909:148..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGATGCCGTGCGGCAAATAGTGGAAGCCGCGGGACAAAGACCACAGGA
CTTTGCACTGCATTCGTTGAGAGTTGGGGAAGCAACGAGTCTCGCTGCGG
GTGGTGATAACATGTCGGAGACAGTTCTGAAACGAGAAGGTAGATGGCGA
TCAGATACAGTCAGGCGATATTGTCGCGTAACGCGGAAGATCCCATAAAC
AGATGCCGTGCGGCAAATAGTGGAAGCCGCGGGACAAAGACCACAGGACT
TTGCACTGCATTCGTTGAGAGTTGGGGAAGCAACGAGTCTCGCTGCGGGT
GGTGATAACATGTCGGAGACAGTTCTGAAACGAGAAGGTAGATGGCGATC
AGATACAGTCAGGCGATATTGTCGCGTAACGCGGAAGATCCCATAA
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