mRNA_H-paniculata_contig6390.14196.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6390.14196.1 vs. uniprot
Match: D7G220_ECTSI (FYR N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G220_ECTSI) HSP 1 Score: 201 bits (511), Expect = 5.670e-53 Identity = 166/415 (40.00%), Postives = 210/415 (50.60%), Query Frame = 3
Query: 6 GVDMWALRGDRVARDRAHRRARAEMKRFTVSKKFPLDVGVIHVHSLGKIKPEPGFYSLGRLAPIGFRASRKEYSPLHGALVNCLMEVVEISGPGSLGAEPSNNAGAAARGFPGEGSSSGDGSKVSPGSENFFGIMAKPEALIPSSYGNPNGLGEQGGGAGAQKGEAVAGYRVTVSTLEGRSEMFEDVAAGRAWRAALNSIGMEVLREGDEDIFPAWESDDPYTTSVEPQRPEPQREHEDAIRAPEENFYKTSENEGYPFSSAAAANNNTNAYDGSHNANGDKPPTTMASLKITDGGIVASKTPQEMERAPGEAKTVGKASESAITIATTAAAGTAGTGIDAEALVAVGXXXXXXXXXXXXXXXXXXXXXXXXRQLRREVSDLIMARAAARARVETNSKAIFEVTGEISPPVRIPR 1250
G + W RGDR +R++AHRRARAE+KRF S+KFP +VGV+ VHSLGK+KPEPGFY+LGRLAP+GFRASR E SP +LV+C+MEVVE+ P G +A A A + P GE G G G K VA +RVT+S L+G+ F+DV+AG+AWRAAL SIG EV G ED FP+WE D V+ P P ++AA A PP A G A +E GEA+ G S +++ AG G+ A +V+ XXXXXXXXXXXXXXX +LRRE + L+ ARA ARARV+ NS IF++TGE+ PP R P+
Sbjct: 416 GGEAWDRRGDRASREKAHRRARAELKRFAASRKFPTNVGVVQVHSLGKVKPEPGFYALGRLAPVGFRASRTERSPDDESLVHCVMEVVEVPDPEEAGTADGGSADAPAXXX-----------XXXXXXXXXXXXXXXXXXXDDAGRPPPEAGGEAGDGGGTAK--TVAVFRVTLSGLKGKRGTFQDVSAGKAWRAALQSIGAEVAPTGQEDYFPSWEGDG-EDGLVDTGDPVTDDNSXXXXXXXXXXXXXXXXXXXSPGAAAAVA-----------------PPAVHAGDGDVVGSNGAEHKAEEATVKKGEAE--GDGSGGGVSVLAETGAGQGGSAGSAAMVVST------ERTSXXXXXXXXXXXXXXXNELRRETAKLLHARAGARARVDANSATIFDITGEVLPPARAPK 791 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6390.14196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6390.14196.1 >prot_H-paniculata_contig6390.14196.1 ID=prot_H-paniculata_contig6390.14196.1|Name=mRNA_H-paniculata_contig6390.14196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=451bp MWALRGDRVARDRAHRRARAEMKRFTVSKKFPLDVGVIHVHSLGKIKPEPback to top mRNA from alignment at H-paniculata_contig6390:2079..10081- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6390.14196.1 ID=mRNA_H-paniculata_contig6390.14196.1|Name=mRNA_H-paniculata_contig6390.14196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8003bp|location=Sequence derived from alignment at H-paniculata_contig6390:2079..10081- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6390:2079..10081- >mRNA_H-paniculata_contig6390.14196.1 ID=mRNA_H-paniculata_contig6390.14196.1|Name=mRNA_H-paniculata_contig6390.14196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2706bp|location=Sequence derived from alignment at H-paniculata_contig6390:2079..10081- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |