mRNA_H-paniculata_contig6386.14192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6386.14192.1
Unique NamemRNA_H-paniculata_contig6386.14192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: D7G8K1_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K1_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 2.700e-112
Identity = 178/288 (61.81%), Postives = 211/288 (73.26%), Query Frame = 1
Query:    1 EAFLAWLQRNGAQFDGVEWPCT-TDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLSVFKNDNGLTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVF-------NRYLKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVELSCTLS---EREPSADRRREVLSASGQFSSR 831
            + FL WL+ +GA  D VEWP + T+SG RGAVARRDIA G+HMVIIP  LMMSE HAK DP+ GHVHR N  +  +DNGL LY+MQE+LK ++SFYWPYL +LP P NLR+W+ ++L  LQD +LVRR  AR R L ALYR T+  L SSYP L+  ++YTFELFDFAW TIQARAFG+RL  +ALVP ADCLNHGNVQTKYDFDV  NG F       NRY + SEVLNSYGRR ND LLL+YGFAM  NEWD  E+ C+L    ++ P   RR+  L ASGQ + R
Sbjct:   21 QEFLRWLRSHGAAIDCVEWPSSETESGVRGAVARRDIAPGDHMVIIPHALMMSEFHAKADPKYGHVHRLNTRLLGSDNGLALYIMQEILKEERSFYWPYLRMLPTPCNLRNWNRESLLLLQDHKLVRRTAARSRQLLALYRETIEFLSSSYPELYTADRYTFELFDFAWRTIQARAFGKRLKSSALVPFADCLNHGNVQTKYDFDVGGNGTFRLFPSGNNRYPRNSEVLNSYGRRANDNLLLDYGFAMLDNEWDAAEVICSLPPSHDQSPLDRRRKACLRASGQHTVR 308          
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: A0A6H5JC99_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC99_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 6.300e-107
Identity = 181/316 (57.28%), Postives = 213/316 (67.41%), Query Frame = 1
Query:    1 EAFLAWLQRNGAQFDGVEWPCT-TDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLSVFKNDNGLTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPT----------------------------EQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVF-------NRYLKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVELSCTL--SEREPSADRRREV-LSASGQFSSR 831
            + FL WL+ +GA  D VEWP + T+SG RGAVARRDIA G+HMVIIP  LMMSE HAK DP+ GHVHR N  +  +DNGL LY+MQE+LK ++SFYWPYL +LP P NLR+W+ ++L  LQD +LVRR  AR R L ALYR T+  L SSYP L+                              ++YTFELFDFAW TIQARAFG+RL  +ALVP ADCLNHGNVQTKYDFDVE NG F       NRY + SEVLNSYGRR ND LLL+YGFAM  NEWD  E++C L  S  +   DRRR+  L ASGQ + R
Sbjct:   21 QEFLRWLRSHGAVIDCVEWPSSETESGVRGAVARRDIAPGDHMVIIPHALMMSEFHAKADPKYGHVHRLNTRLLGSDNGLALYIMQEILKEERSFYWPYLRMLPTPCNLRNWNRESLLLLQDHKLVRRTAARGRQLLALYRETIEFLSSSYPDLYTVSRRFDFWHPESRLLRLRVWCIYPCAPCADRYTFELFDFAWTTIQARAFGKRLKSSALVPFADCLNHGNVQTKYDFDVERNGTFRLFPSGNNRYPRNSEVLNSYGRRANDNLLLDYGFAMLDNEWDTAEVTCFLPPSHGQSPLDRRRKACLLASGQHTVR 336          
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: A0A225UML7_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UML7_9STRA)

HSP 1 Score: 266 bits (679), Expect = 3.210e-84
Identity = 137/273 (50.18%), Postives = 172/273 (63.00%), Query Frame = 1
Query:    1 EAFLAWLQRNGAQFDGVEWPCTTDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLSVFKNDNG-LTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVFNRY-------LKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVELSCTLSEREPSADRRR 795
            + FL WL+ NGA F  ++WP TT +G RGAVA  DIAT E M+ +PR L++SE     DP+L  V+R N  VF  D+  LTL++M+E++ G++SF+ PYL+ILP P +++ W+   L EL D RLV     R   +   Y   M  L   YPG FP   YT + F FAW TIQAR FGRRL  TALVP ADCLNH NV TKYDFDV+ENG+F  Y        KG EV NSYGRR N  LLL+YGFA+P NEWD V++  +     P   + R
Sbjct:   13 QRFLQWLRDNGATFPKLQWPTTTPNGLRGAVALEDIATDEPMICVPRSLLISEHLCWQDPQLQCVYRDNRDVFTRDDPVLTLFIMRELVLGERSFFHPYLSILPYPESVQDWNVDELRELHDDRLVAAAARRSSEINVYYDRVMTRLQQKYPGEFPETLYTLDKFRFAWKTIQARTFGRRLPWTALVPFADCLNHSNVATKYDFDVDENGMFRLYPSSSTCFAKGEEVFNSYGRRANFQLLLDYGFALPDNEWDYVDVEISKDRAGPRGKKLR 285          
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: A0A8K1FF70_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF70_PYTOL)

HSP 1 Score: 261 bits (668), Expect = 4.910e-82
Identity = 133/259 (51.35%), Postives = 169/259 (65.25%), Query Frame = 1
Query:    1 EAFLAWLQRNGAQFDGVEWPCTTDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLSVFKNDNG-LTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVF-------NRYLKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVELS 753
            E F+ WL  NGA F  +EWP  T++G RGA+AR +I   E M+ IP++LM+SE     DP+L  V+  N  VF  D+  + L++++E LKG++SFY PYL ILP+  N++ W  + LEEL+D  L      R   +Q  Y   M +LD  YPG FP  QYTF+ F FAW +IQAR FGRRL  T+LVP ADCLNH NV TKYDFDV+ NG F       N Y KG+EV NSYGRR N  LLL+YGFA+  NEW+ VE+S
Sbjct:    7 ERFVQWLLDNGASFPKLEWPVLTENGLRGAIAREEIHPNEAMLTIPQRLMISEATCWADPQLRRVYEENRDVFARDDPVIALFLVREKLKGEESFYHPYLAILPEVINVQDWSKEELEELRDSSLAEAAARRSTEVQTFYDGIMELLDEKYPGEFPRNQYTFDRFRFAWKSIQARTFGRRLPWTSLVPFADCLNHSNVATKYDFDVDGNGSFRLFPSASNSYAKGAEVFNSYGRRPNFQLLLDYGFALEDNEWEYVEVS 265          
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: W2Z914_PHYPR (SET domain-containing protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2Z914_PHYPR)

HSP 1 Score: 259 bits (663), Expect = 1.220e-81
Identity = 134/271 (49.45%), Postives = 169/271 (62.36%), Query Frame = 1
Query:    7 FLAWLQRNGAQFDGVEWPCTTDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLSVFKNDNG-LTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVFNRY-------LKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVELSCTLSEREPSADRRR 795
            FL WL+ NGA F  +EWP TT +G RGAVA   I TGE M+ IPR+L++SE     DP+LG V R N  VF  D+  + L++++E+L  + SF+ PYL+ILP P +++ W    L EL D RLV     R   +   YR  +  L   YPG FP   YTF+ F FAW TIQAR FGRRL  TALVP ADCLNH NV TKYDFDV +NG+F  Y       +KG+EV NSYGRR+N  L+L+YGFA+  NEWD V++        P   + R
Sbjct:    8 FLQWLRDNGATFPKLEWPVTTPNGLRGAVATETITTGEPMLCIPRRLLISEELCWQDPQLGPVFRDNRDVFTRDDPVMALFIVRELLLKESSFFHPYLSILPYPESVQDWTHDELHELYDERLVDAAARRSSEVSIYYRRVLTRLQEKYPGEFPETLYTFDKFKFAWKTIQARTFGRRLPWTALVPFADCLNHNNVSTKYDFDVNDNGLFRLYPSAATSFVKGAEVFNSYGRRSNFQLMLDYGFALTDNEWDYVDVEIDKDRAGPRGKKLR 278          
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: W2Q7U8_PHYPN (SET domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q7U8_PHYPN)

HSP 1 Score: 259 bits (663), Expect = 3.490e-81
Identity = 134/271 (49.45%), Postives = 169/271 (62.36%), Query Frame = 1
Query:    7 FLAWLQRNGAQFDGVEWPCTTDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLSVFKNDNG-LTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVFNRY-------LKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVELSCTLSEREPSADRRR 795
            FL WL+ NGA F  +EWP TT +G RGAVA   I TGE M+ IPR+L++SE     DP+LG V R N  VF  D+  + L++++E+L  + SF+ PYL+ILP P +++ W    L EL D RLV     R   +   YR  +  L   YPG FP   YTF+ F FAW TIQAR FGRRL  TALVP ADCLNH NV TKYDFDV +NG+F  Y       +KG+EV NSYGRR+N  L+L+YGFA+  NEWD V++        P   + R
Sbjct:    8 FLQWLRDNGATFPKLEWPVTTPNGLRGAVATETITTGEPMLCIPRRLLISEELCWQDPQLGPVFRDNRDVFTRDDPVMVLFIVRELLLKESSFFHPYLSILPYPESVQDWTHDELHELYDERLVDAAARRSSEVSIYYRRVLTRLQEKYPGEFPETLYTFDKFKFAWKTIQARTFGRRLPWTALVPFADCLNHNNVSTKYDFDVNDNGLFRLYPSAATSFVKGAEVFNSYGRRSNFQLMLDYGFALTDNEWDYVDVEIDKDRAGPRGKKLR 278          
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: G4ZIF2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZIF2_PHYSP)

HSP 1 Score: 256 bits (653), Expect = 1.320e-79
Identity = 130/258 (50.39%), Postives = 168/258 (65.12%), Query Frame = 1
Query:    1 EAFLAWLQRNGAQFDGVEWPCTTDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLSVFKNDNG-LTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVFNRY-------LKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVEL 750
            + FL WL+ NGA F  ++WP T+ +G RG VA   +A+GE M+ IPR+L++SE     DP+LG V + N  VF  D+  L L++++E+L  D+SF+ PYL +LP P +++ W    L EL D RLV     R   +   YR  M  L + YPG FP   YTF+ F FAW TIQAR FGRRL  TALVP ADCLNH NV TKYDFDV +NG+F  Y        +G+EV NSYGRR+N  LLL+YGFA+P NEWD V++
Sbjct:   12 QRFLQWLRDNGATFPKLQWPVTSPNGLRGTVAAAAVASGEPMLCIPRRLLISEDLCWRDPQLGRVFQDNRDVFTRDDPVLALFLVRELLLADRSFFHPYLAVLPYPESVQDWTQAELGELHDERLVDAAARRTSEIDVYYRRVMVRLQTKYPGEFPEALYTFDRFKFAWKTIQARTFGRRLPWTALVPFADCLNHTNVATKYDFDVNDNGLFRLYPSGATSFAQGAEVFNSYGRRSNFQLLLDYGFALPDNEWDYVDV 269          
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: A0A6A3EG31_9STRA (SET domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EG31_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.620e-79
Identity = 134/258 (51.94%), Postives = 166/258 (64.34%), Query Frame = 1
Query:    1 EAFLAWLQRNGAQFDGVEWPCTTDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLSVFKNDNG-LTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVFNRY-------LKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVEL 750
            + FL WLQ NGA F  ++WP TT SG RGAVA   IATGE M+ IPR+L++SE     DP+L  V + N  VF  D+  L+L++++E L G +SF+ PYL +LP P +++ W    L EL D RLV     R   +   YR  M  L S YPG FP   YTF+ F FAW TIQAR FGRRL  TALVP ADCLNH NV T+YD DV++NG+F  Y        KG+EV NSYGRR N  LLL+YGFA+  NEWD V++
Sbjct:    7 QRFLQWLQDNGATFPKLQWPTTTPSGLRGAVATSAIATGEPMLCIPRRLLISEDLCWRDPQLRCVFQDNRDVFTRDDPVLSLFLVREQLLGARSFFQPYLAVLPYPESVQDWTQDELRELHDGRLVDAAARRSSEIDVYYRRVMNRLQSKYPGEFPEALYTFDRFKFAWKTIQARTFGRRLPWTALVPFADCLNHTNVATRYDLDVDDNGLFRLYPSASTSFAKGAEVFNSYGRRANFQLLLDYGFALFDNEWDYVDV 264          
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: A0A836CPE3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPE3_9STRA)

HSP 1 Score: 249 bits (636), Expect = 3.880e-79
Identity = 134/259 (51.74%), Postives = 161/259 (62.16%), Query Frame = 1
Query:    7 FLAWLQRNGAQFDGVEWPC-TTDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLS-VFKNDNGLTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVFNRYL-----------KGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEV 744
            FL WL+ NGA +D +EWP   T SG+RGA+A  DIA GE  + +P + M++   A+  P +G V  A    + + D  L LYVM E+L+GD SFY PYL +LP P     WD   +  LQD RL     AR R L   +  TM  L +SYPG+FP E YT  L+  AWG I+ARAFGRRL  +ALVPLADCLNHGNV TKYDFD   NGVF  +            +G E LNSYGRR+N  LLLEYGFAM  NEWDEV
Sbjct:    2 FLQWLRENGATWDKLEWPSYATASGSRGAIATADIAPGEPFLCVPERCMLTPPQAQRLPCVGPVFAAEAEGLLRGDAALALYVMHELLRGDASFYAPYLAVLPAPHTAEDWDATAVAVLQDERLAASADARSRQLTRAWERTMSALAASYPGMFPRETYTLALWRRAWGVIRARAFGRRLPWSALVPLADCLNHGNVPTKYDFDAGGNGVFRLWPSGGGSASVAVPRGCEALNSYGRRSNAHLLLEYGFAMLDNEWDEV 260          
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Match: A0A833WJK7_PHYIN (SET domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WJK7_PHYIN)

HSP 1 Score: 251 bits (640), Expect = 5.180e-78
Identity = 132/256 (51.56%), Postives = 161/256 (62.89%), Query Frame = 1
Query:    7 FLAWLQRNGAQFDGVEWPCTTDSGTRGAVARRDIATGEHMVIIPRQLMMSEVHAKNDPELGHVHRANLSVFKNDNG-LTLYVMQEMLKGDQSFYWPYLNILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSYPGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTKYDFDVEENGVFNRY-------LKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVEL 750
            FL WLQ NGA F  ++WP  T +G RGAVA  DIAT E M+ IPR L++SE     DP+LG V R+N  VF  D+  + L++++E+L   +SF+ PYL ILP P +++ W    L EL D RLV     R   +   YR  M  L   Y G FP   YTF+ F FAW TIQAR FGRRL  TALVPLADCLNH  V TKYDFDV  +G+F  Y        K SEV NSYGRR+N  LLL+YGFA+  NEWD V++
Sbjct:    9 FLQWLQDNGATFPKLQWPVATPNGLRGAVATEDIATNEPMLSIPRHLLISEEMCWQDPQLGPVFRSNRDVFTRDDPVMALFIVRELLLEQRSFFHPYLAILPSPESVQDWTHDELRELHDERLVGAAVRRSSEINIYYRRVMTRLQEKYAGEFPETLYTFDKFKFAWKTIQARTFGRRLPWTALVPLADCLNHNTVATKYDFDVNGSGLFRLYPSATTSFAKDSEVFNSYGRRSNFQLLLDYGFALTDNEWDYVDV 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6386.14192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8K1_ECTSI2.700e-11261.81SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JC99_9PHAE6.300e-10757.28SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A225UML7_9STRA3.210e-8450.18SET domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A8K1FF70_PYTOL4.910e-8251.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2Z914_PHYPR1.220e-8149.45SET domain-containing protein n=1 Tax=Phytophthora... [more]
W2Q7U8_PHYPN3.490e-8149.45SET domain-containing protein n=8 Tax=Phytophthora... [more]
G4ZIF2_PHYSP1.320e-7950.39Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3EG31_9STRA1.620e-7951.94SET domain-containing protein n=2 Tax=Phytophthora... [more]
A0A836CPE3_9STRA3.880e-7951.74Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A833WJK7_PHYIN5.180e-7851.56SET domain-containing protein n=2 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6386contigH-paniculata_contig6386:1474..4643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.5
Seed ortholog evalue7.2e-94
Seed eggNOG ortholog2880.D7G8K1
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons5
Model size846
Cds size846
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6386.14192.1prot_H-paniculata_contig6386.14192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6386 1474..4643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930738.926131-CDS-H-paniculata_contig6386:1473..16871622930738.926131-CDS-H-paniculata_contig6386:1473..1687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 1474..1687 -
1691481430.466407-CDS-H-paniculata_contig6386:1473..16871691481430.466407-CDS-H-paniculata_contig6386:1473..1687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 1474..1687 -
1622930738.9502456-CDS-H-paniculata_contig6386:1708..17411622930738.9502456-CDS-H-paniculata_contig6386:1708..1741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 1709..1741 -
1691481430.478893-CDS-H-paniculata_contig6386:1708..17411691481430.478893-CDS-H-paniculata_contig6386:1708..1741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 1709..1741 -
1622930738.9703815-CDS-H-paniculata_contig6386:2215..23491622930738.9703815-CDS-H-paniculata_contig6386:2215..2349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 2216..2349 -
1691481430.4893384-CDS-H-paniculata_contig6386:2215..23491691481430.4893384-CDS-H-paniculata_contig6386:2215..2349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 2216..2349 -
1622930738.9918003-CDS-H-paniculata_contig6386:3297..36451622930738.9918003-CDS-H-paniculata_contig6386:3297..3645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 3298..3645 -
1691481430.4997141-CDS-H-paniculata_contig6386:3297..36451691481430.4997141-CDS-H-paniculata_contig6386:3297..3645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 3298..3645 -
1622930739.0137541-CDS-H-paniculata_contig6386:4526..46431622930739.0137541-CDS-H-paniculata_contig6386:4526..4643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 4527..4643 -
1691481430.5103128-CDS-H-paniculata_contig6386:4526..46431691481430.5103128-CDS-H-paniculata_contig6386:4526..4643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6386 4527..4643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6386.14192.1

>prot_H-paniculata_contig6386.14192.1 ID=prot_H-paniculata_contig6386.14192.1|Name=mRNA_H-paniculata_contig6386.14192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
EAFLAWLQRNGAQFDGVEWPCTTDSGTRGAVARRDIATGEHMVIIPRQLM
MSEVHAKNDPELGHVHRANLSVFKNDNGLTLYVMQEMLKGDQSFYWPYLN
ILPKPRNLRHWDDKNLEELQDPRLVRRNGARKRHLQALYRHTMGILDSSY
PGLFPTEQYTFELFDFAWGTIQARAFGRRLSCTALVPLADCLNHGNVQTK
YDFDVEENGVFNRYLKGSEVLNSYGRRTNDTLLLEYGFAMPYNEWDEVEL
SCTLSEREPSADRRREVLSASGQFSSRYCAP*
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mRNA from alignment at H-paniculata_contig6386:1474..4643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6386.14192.1 ID=mRNA_H-paniculata_contig6386.14192.1|Name=mRNA_H-paniculata_contig6386.14192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3170bp|location=Sequence derived from alignment at H-paniculata_contig6386:1474..4643- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCCTTTCTAGCTTGGCTACAACGAAATGGTGCTCAGTTCGACGGCGT AGAATGGCCTTGCACGACGGACAGCGGGACACGTGGAGCAGTGGCTCGAA GAGACATCGCAACAGGGGTACGTGGTACTAGATAATAGGAAGAAGTTCTG CGTGGTTGATGGGGATCTGCCATGAGTTGTCCTTCCGTCGTGACTGTTTG CGGCAGGAGATATGATCCAAGTGAATCGAAGTCAGTATCTTGTGTTTTGT CCTGCATATTGTACTGTAGCCCAGATATAATGCTGCACCCCAGGCCGCTC GCGCCTAGTCTCATCCTGTCAGCACAAGTGCTTCTCCGTCATATCTGGCC TAAAGCTGTACACACTATCCTCGAACGTGCTATTCGTAGATGTGATTATC GACTGAATAATCGGTTATGTCAAACTCGATCAACACTTACAGATGGTTCA GCTATGTTCCATTCGTCTGCAGACAGATTTATGTCGGTCCGCTCTCTCTC GCATTTCGAAGTCAATTTACCTCTCGCACCTCTCCCTCTCTCTCTGTTTC TCTCTCTATTTCTCTCTCTCTCGCTCTCTCTGTTTCTCTCTGTTTCTCTC TGTTTTTTTCTTTTTTTCTCTCTCTCTGACTCCTTGTCTATTAGTAGCTC TAGCTCCCTCGCTCGCCACCTCTGTGTCACCACAATTTTCTTTCTCGTGC GTATTGACAGATTTTGACACATACCTTCCCTCGATGCTGCGGCCCCAACC CCCGAATCTGTTGTGGTGACAATATAATGCTACTGCTGTGTCGTGCCCGG CAAGCTCACCGCAACTATAGTGCTCCTACAGTTTCTATTTATCGCTATTA TGCGGAACTTAATGGTAGATTTCGAACTGGTCTTCGTTGATAATGCAACC CCAAGCCAATCCATCCTAGCGCTGCCTCTTTGGTTGCTTTGAACGCTGCT GGCTGGCCCTTCCTTGTTATCTTGTCGAAACGAACCACCAAAACGCAGGA GCACATGGTGATAATCCCACGTCAACTCATGATGTCCGAGGTCCACGCGA AGAACGACCCCGAACTAGGTCATGTGCACCGCGCCAACCTTTCCGTTTTC AAGAACGACAACGGTCTAACCCTCTATGTCATGCAGGAGATGCTGAAGGG AGACCAATCTTTTTATTGGCCATACCTGAATATATTGCCCAAGCCCCGTA ACCTGAGACACTGGGATGACAAGAACTTAGAGGAGTTACAAGATCCTAGG TTGGTTCGGCGGAACGGCGCGCGAAAAAGACACCTCCAGGCGTTGTATAG ACATACGATGGGAATTCTCGACAGCAGCTATCCTGGCCTCTTTCCGGTGA GTCGTTGCGTTTGGTAGGTGTATATATCTATCGGGTGTTGTGTTGGTGTT GCAGATGACACGTCGACAAGACACATGCATAGTGTGTTGACTTATTGCTT GAGCCGATAGTCCGAAAAGGTCGAGCACAACTTCGCCGCAAAGTCGACCC GCTTTAGCGGGAACGAGCGGACACAACACTATCGAAAAGGCCGACTGGCT CTCGTTGTACCTATTTATAGTCCCAGATCATTCCTGTATTACTTCCAGCA CAATGAGGTTGCCTCCTTGGTACCCAAGTGCCACGCGGTGTGGAAAGTAG GCTGTTCGGACGTACGCTCGACGTCACTGGTGGGTAGTCTGAAGAGAATG ACCGCGTCAAGTCACCCAATTACATTGTCCTATCGACCGCATCACCGAAA AGATTGCCGCTGTAGTTAGGTATGACACAACTCCAAAATCAGAGTAATGT TTTCATGGCTAACCCGAATCACTAGGAGTTTCTCCCAGCCATAATCAGAC CTGATGTAGAGGATGTATTTATCCATGAACCGTCGTTTCAAAATCGCACG ATACAACTTTGTTCTAACACAACCTTCACGTGTTCGACCCTTGCTTGTAT GCGACCGGGTTAGTTGTACTCAACGCAGACACGCAAACCATCTACTTGTA TACGTGGATAGACTACCTAAATGATGTGCGTGAAGCGCCTCGACTTGTTA AGCAAGTGAATTGCTAAATCTCTCTCGATGCTACCTCATCTCTTTCTCTC TGGGAGCTCACAGACCTTGGGCGTCTTAACAGCAATTAAAACGTAGTTTT TCTGCAGCTTATGTCACTTCGTCCGCGGTAGTATGTTAAGTGCAGTGTGC TTCACCAGTCAGTACCTTCCAATACTTCCCCCCTAAACGGCCACCGTTGT TGTATCCTCGCTCGACACGGGTCACCTCCGAAACCCCCCGAAAGACCGAA CAGTACACGTTCGAGCTGTTCGACTTTGCGTGGGGCACAATTCAGGCCCG AGCGTTTGGAAGGCGGCTCTCGTGCACAGCATTGGTGCCCCTGGCGGACT GCCTCAACCATGGCAACGTGCAGACCAAGTGAGAGACATGCAAAGCAAAC AACGTCATCTGTCCGCTACATGTTAGTATATCTCGCCATCATTTGGACTC ATCAGTCGGGGGGAAGGGGTAACTGTGGAGCAATTTGACTCAGCATATTT TACTGTGCTAGCTAGATGAGCCACATACAAGACAAGGCGATGCCCTCGGC CGTTTCCCCTTCGCCCATAGATCAATGCGAAAATGGCCGTATTTGCTTGA TGTAGATGTAAATGTTGTGTCGGATATCATATATGCGCCAATAGAGAGCC TACTACGCATGAAACACAAAAATTGGGGATAAAGCACAACACAAAGAAGG AAAGCTGCAATATGGTGGTGCGTAGTCTTCAACCGATTTAACCATCCCAC AAATCTGGTACGGTACGTGCTGCCTGGTATTGGCCGTTCGTACATGGGGG CGCGAACAGGTTACGTCCGCGCGCGTGCTAAACACGACTTGAACTCCTCC AGGTACGATTTTGACGTTGAGGAGAACGGCGTTTTCCGACTTTTTCCCTC CGGGAATAATCGGTACCTGAAGGGATCCGAGGTGCTCAACAGCTACGGAC GGAGAACGAACGACACCCTTTTGCTGGAGTACGGCTTTGCGATGCCGTAC AATGAGTGGGATGAAGTAGAACTATCGTGCACGCTGTCCGAACGCGAACC GTCGGCGGACCGAAGAAGAGAGGTGCTGAGTGCCAGCGGACAGTTCTCGT CCAGGTATTGTGCGCCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6386:1474..4643-

>mRNA_H-paniculata_contig6386.14192.1 ID=mRNA_H-paniculata_contig6386.14192.1|Name=mRNA_H-paniculata_contig6386.14192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig6386:1474..4643- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCCTTTCTAGCTTGGCTACAACGAAATGGTGCTCAGTTCGACGGCGT
AGAATGGCCTTGCACGACGGACAGCGGGACACGTGGAGCAGTGGCTCGAA
GAGACATCGCAACAGGGGAAGCCTTTCTAGCTTGGCTACAACGAAATGGT
GCTCAGTTCGACGGCGTAGAATGGCCTTGCACGACGGACAGCGGGACACG
TGGAGCAGTGGCTCGAAGAGACATCGCAACAGGGGAGCACATGGTGATAA
TCCCACGTCAACTCATGATGTCCGAGGTCCACGCGAAGAACGACCCCGAA
CTAGGTCATGTGCACCGCGCCAACCTTTCCGTTTTCAAGAACGACAACGG
TCTAACCCTCTATGTCATGCAGGAGATGCTGAAGGGAGACCAATCTTTTT
ATTGGCCATACCTGAATATATTGCCCAAGCCCCGTAACCTGAGACACTGG
GATGACAAGAACTTAGAGGAGTTACAAGATCCTAGGTTGGTTCGGCGGAA
CGGCGCGCGAAAAAGACACCTCCAGGCGTTGTATAGACATACGATGGGAA
TTCTCGACAGCAGCTATCCTGGCCTCTTTCCGGAGCACATGGTGATAATC
CCACGTCAACTCATGATGTCCGAGGTCCACGCGAAGAACGACCCCGAACT
AGGTCATGTGCACCGCGCCAACCTTTCCGTTTTCAAGAACGACAACGGTC
TAACCCTCTATGTCATGCAGGAGATGCTGAAGGGAGACCAATCTTTTTAT
TGGCCATACCTGAATATATTGCCCAAGCCCCGTAACCTGAGACACTGGGA
TGACAAGAACTTAGAGGAGTTACAAGATCCTAGGTTGGTTCGGCGGAACG
GCGCGCGAAAAAGACACCTCCAGGCGTTGTATAGACATACGATGGGAATT
CTCGACAGCAGCTATCCTGGCCTCTTTCCGACCGAACAGTACACGTTCGA
GCTGTTCGACTTTGCGTGGGGCACAATTCAGGCCCGAGCGTTTGGAAGGC
GGCTCTCGTGCACAGCATTGGTGCCCCTGGCGGACTGCCTCAACCATGGC
AACGTGCAGACCAAACCGAACAGTACACGTTCGAGCTGTTCGACTTTGCG
TGGGGCACAATTCAGGCCCGAGCGTTTGGAAGGCGGCTCTCGTGCACAGC
ATTGGTGCCCCTGGCGGACTGCCTCAACCATGGCAACGTGCAGACCAAGT
ACGATTTTGACGTTGAGGAGAACGGCGTTTTGTACGATTTTGACGTTGAG
GAGAACGGCGTTTTTAATCGGTACCTGAAGGGATCCGAGGTGCTCAACAG
CTACGGACGGAGAACGAACGACACCCTTTTGCTGGAGTACGGCTTTGCGA
TGCCGTACAATGAGTGGGATGAAGTAGAACTATCGTGCACGCTGTCCGAA
CGCGAACCGTCGGCGGACCGAAGAAGAGAGGTGCTGAGTGCCAGCGGACA
GTTCTCGTCCAGGTATTGTGCGCCGTGATAATCGGTACCTGAAGGGATCC
GAGGTGCTCAACAGCTACGGACGGAGAACGAACGACACCCTTTTGCTGGA
GTACGGCTTTGCGATGCCGTACAATGAGTGGGATGAAGTAGAACTATCGT
GCACGCTGTCCGAACGCGAACCGTCGGCGGACCGAAGAAGAGAGGTGCTG
AGTGCCAGCGGACAGTTCTCGTCCAGGTATTGTGCGCCGTGA
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