mRNA_H-paniculata_contig6383.14191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: W4FLT8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLT8_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.880e-28 Identity = 98/309 (31.72%), Postives = 150/309 (48.54%), Query Frame = 1
Query: 1 WDGMEAAVAEFVRQCFHYADSKVGSRVPPPLGELMYGTEVRDVLHVDYLHLGASDPRAMTEIVDGGCPYLVVLVNDLSGYVWLEPALECTARVAAETILRVEDLD-----VPHERMQGLVEDWVKSQEATRREVL--------QHVR--------RYRERKWEMNGVGYLPNFEVGDYVLTAWVCKLANILTLVGTWTGPWRVVGGGSAHVYEIQDIVT-GATKDVRAVRMRPYADKSLDVGMDVQAMFEATKHQGEFEIADIVDIGENSVREGEYMVLVEWVGLDAAEERSWEPVSTIYEDVPAYLRR 861
W ++ V FV C H G VP P GE ++ T+ +++H D+L L P A GG Y++V+ +D+SG+V L + +A A ++ L V + + + DW+KS+ + L +HV + R R+ V L F +GD+VL AW + LTL W GP+RVV S ++ E+Q +V GAT A R+R Y + +V D++ A +G F + D+ D+ +R+G + VL++W+GLD E SWEP +IYEDVP RR
Sbjct: 4 WPTLKTDVKNFVTACLHCMVVD-GESVPRPWGEALHATKPNELIHFDWLSL----PEA-----PGGLKYVLVIKDDMSGFVRLHASTTASAAETAAALMECRSLPPLTGLVHPDESREVTIDWIKSRAIRQVTELADALGIMHKHVAETAAAKRAKARYRRDGQRSVK-LVKFTLGDFVLVAWTLQHPGKLTL--RWKGPFRVVKVVSDYLMEVQQLVPPGATSLHHACRLRLYCESGREVNEDLKTQI-AFGDEG-FYVEDLRDL---RLRDGVWEVLIKWLGLDNLES-SWEPALSIYEDVPVLFRR 293
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.070e-18 Identity = 45/100 (45.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 1 WDGMEAAVAEFVRQCFHYADSKVGSRVPPPLGELMYGTEVRDVLHVDYLHLGASDPRAMTEI-VDGGCPYLVVLVNDLSGYVWLEPALECTARVAAETIL 297
W ME V +FV+QC H DSK G +VP PLGE ++GT +V+H DYL++GAS P + + G Y++V+++D+S +VWLEP CTA + A+ +L
Sbjct: 1323 WFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLL 1422
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 4.530e-18 Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 1 WDGMEAAVAEFVRQCFHYADSKVGSRVPPPLGELMYGTEVRDVLHVDYLHLGASDPRAMTEIVDG-GCPYLVVLVNDLSGYVWLEPALECTARVAAETILR-VEDLDVP 321
W M+ V EFV+QC H DSK G VP P GE ++G +VLH DYLH+G S P + + G YL+V+++DLS + W+EP CTAR+ A+ +L + L VP
Sbjct: 445 WSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 553
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 5.570e-18 Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 1 WDGMEAAVAEFVRQCFHYADSKVGSRVPPPLGELMYGTEVRDVLHVDYLHLGASDPRAMTEIVDG-GCPYLVVLVNDLSGYVWLEPALECTARVAAETILR-VEDLDVP 321
W M+ V EFV+QC H DSK G VP P GE ++G +VLH DYLH+G S P + + G YL+V+++DLS + W+EP CTAR+ A+ +L + L VP
Sbjct: 1221 WSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 1329
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: UPI001E1D7BCA (uncharacterized protein LOC123543770 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7BCA) HSP 1 Score: 90.1 bits (222), Expect = 1.460e-17 Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 1
Query: 409 RERKWEMNGVGYLPNFEVGDYVLTAWVCKLANILTLVGTWTGPWRVVGGGSAHVYEIQDIVTGATKDVRAVRMRPYADKSLDVGMDVQAMFEATKHQGEFEIADIVDIGENSVREGEYMVLVEWVGLDAAEERSWEPVSTIYEDVPAYLRRKLNKC 876
R+R+ GV PNF++GD+VL A L + L W GP RVV S HVY ++D+ +G D + R+R + D LDV D+ A A QG +++ I+D+ +S G + VLV W+G + + +WEP++TI+EDVP + +C
Sbjct: 67 RQRQHAKIGVA-APNFDLGDFVLVAQREALVHS-KLSLRWRGPRRVVRVLSDHVYSVEDLSSGHVTDAHSTRLRFFHDSLLDVSADLLAQV-AHNEQG-YDVRAIIDL-RHSAEHGHFEVLVAWLGFEP-HDYTWEPLTTIFEDVPHKVNTFFKRC 216
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 3.760e-17 Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 10 MEAAVAEFVRQCFHYADSKVGSRVPPPLGELMYGTEVRDVLHVDYLHLGASDPRAMTEIVDG-GCPYLVVLVNDLSGYVWLEPALECTARVAAETILR-VEDLDVP 321
M+ V EFV+QC H DSK G VP P GE ++G +VLH DYLH+G S P + + G YL+V+++DLS + W+EP CTAR+ A+ +L + L VP
Sbjct: 1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVP 106
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: G4YEE3_PHYSP (Chromo domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YEE3_PHYSP) HSP 1 Score: 88.2 bits (217), Expect = 4.200e-17 Identity = 49/136 (36.03%), Postives = 78/136 (57.35%), Query Frame = 1
Query: 451 NFEVGDYVLTAWVCKLANILTLVGTWTGPWRVVGGGSAHVYEIQDIVTGATKDVRAVRMRPYADKSLDVGMDVQAMFEATKHQGEFEIADIVDIGENSVREGEYMVLVEWVGLDAAEERSWEPVSTIYEDVPAYLR 858
NF +GDYVL + ++ L W GP+RV+G A+ +EI+ +++GAT+ V A R++ YAD SLD+ + + F +A + ++ Y VLV W GL+ E+ SWEP++T++EDVP L+
Sbjct: 27 NFHIGDYVLWPRIDSEVHVNKLAVKWIGPYRVIGA-QANSFEIEHLLSGATRRVHASRLKMYADSSLDLRAFGEILEHIANQDVYFTVASFKEHRKHPAHS--YEVLVAWEGLEEIED-SWEPMTTMHEDVPVKLQ 158
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.120e-16 Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 10 MEAAVAEFVRQCFHYADSKVGSRVPPPLGELMYGTEVRDVLHVDYLHLGASDPRAMTEI-VDGGCPYLVVLVNDLSGYVWLEPALECTARVAAETIL 297
ME V +FV+ C + DSK G +VP PLGE +GT +V+ DYL++GAS + + G Y++V+++D+S +VWLEP CTAR+ ++ +L
Sbjct: 1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLL 97
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: H3GNA9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNA9_PHYRM) HSP 1 Score: 89.4 bits (220), Expect = 3.460e-16 Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1
Query: 451 NFEVGDYVLTAWVCKLANILTLVGTWTGPWRVVGGGSAHVYEIQDIVTGATKDVRAVRMRPYADKSLDVGMDVQAMFEATKHQGEFEIADIVDIGENSVREGE--YMVLVEWVGLDAAEERSWEPVSTIYEDVPAYLR 858
NF VGDYVL + V L TW GP+RV+G +A+ +EI+ ++T TK A R++ YAD+SLDV ++ A H +I V+ + Y +LV W GL+A E+ SWEPV+T+YEDVP L+
Sbjct: 900 NFHVGDYVLWSRVDAKKKGNKLSVTWVGPYRVIGA-NANSFEIEHLITATTKFAHASRLKMYADQSLDVNEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMYEDVPIKLQ 1029
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Match: A0A6A3M013_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3M013_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 4.040e-16 Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1
Query: 451 NFEVGDYVLTAWVCKLANILTLVGTWTGPWRVVGGGSAHVYEIQDIVTGATKDVRAVRMRPYADKSLDVGMDVQAMFEATKHQGEFEIADIVDIGENSVREGE--YMVLVEWVGLDAAEERSWEPVSTIYEDVPAYLR 858
NF VGDYVL + V L TW GP+RV+G +A+ +EI+ ++T TK A R++ YAD+SLDV ++ A H +I V+ + Y +LV W GL+A E+ SWEPV+T+YEDVP L+
Sbjct: 508 NFHVGDYVLWSRVDAKKKGNKLSVTWIGPYRVIGA-NANSFEIEHLITATTKFAHASRLKMYADQSLDVNEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMYEDVPIKLQ 637 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6383.14191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6383.14191.1 >prot_H-paniculata_contig6383.14191.1 ID=prot_H-paniculata_contig6383.14191.1|Name=mRNA_H-paniculata_contig6383.14191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp MEAAVAEFVRQCFHYADSKVGSRVPPPLGELMYGTEVRDVLHVDYLHLGAback to top mRNA from alignment at H-paniculata_contig6383:4838..6073- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6383.14191.1 ID=mRNA_H-paniculata_contig6383.14191.1|Name=mRNA_H-paniculata_contig6383.14191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig6383:4838..6073- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6383:4838..6073- >mRNA_H-paniculata_contig6383.14191.1 ID=mRNA_H-paniculata_contig6383.14191.1|Name=mRNA_H-paniculata_contig6383.14191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig6383:4838..6073- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |