mRNA_H-paniculata_contig6381.14190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6381.14190.1
Unique NamemRNA_H-paniculata_contig6381.14190.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6381.14190.1 vs. uniprot
Match: D7FY03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY03_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 3.060e-45
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 3 
Query:  171 MLGRPNPYRKARAKGSIDDLMFDMDKRRHTSFRFQNYQNFITDRPGKLDERYRQKLSWCALDEETGKLDYLTEGGLSPNNGRRMSTSSVGSRGTMG 458
            ML RPNPYRK+RA G++DDLMFDMDKRRHTSFRFQNYQNFITDRPGK DERYRQKLSWCALDEETG+LDYLTEG LSP  GRRMSTSSVGS  T G
Sbjct:    1 MLKRPNPYRKSRAAGTLDDLMFDMDKRRHTSFRFQNYQNFITDRPGKFDERYRQKLSWCALDEETGQLDYLTEG-LSPKGGRRMSTSSVGSSRTGG 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6381.14190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY03_ECTSI3.060e-4586.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6381contigH-paniculata_contig6381:4214..10392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size585
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6381.14190.1prot_H-paniculata_contig6381.14190.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6381 4214..10222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930738.7001076-CDS-H-paniculata_contig6381:4213..44371622930738.7001076-CDS-H-paniculata_contig6381:4213..4437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 4214..4437 -
1691481430.3934648-CDS-H-paniculata_contig6381:4213..44371691481430.3934648-CDS-H-paniculata_contig6381:4213..4437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 4214..4437 -
1622930738.7208617-CDS-H-paniculata_contig6381:5744..57901622930738.7208617-CDS-H-paniculata_contig6381:5744..5790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 5745..5790 -
1691481430.4048862-CDS-H-paniculata_contig6381:5744..57901691481430.4048862-CDS-H-paniculata_contig6381:5744..5790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 5745..5790 -
1622930738.742096-CDS-H-paniculata_contig6381:10078..102221622930738.742096-CDS-H-paniculata_contig6381:10078..10222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 10079..10222 -
1691481430.4177563-CDS-H-paniculata_contig6381:10078..102221691481430.4177563-CDS-H-paniculata_contig6381:10078..10222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 10079..10222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930738.765001-UTR-H-paniculata_contig6381:10222..103921622930738.765001-UTR-H-paniculata_contig6381:10222..10392Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6381 10223..10392 -
1691481430.426146-UTR-H-paniculata_contig6381:10222..103921691481430.426146-UTR-H-paniculata_contig6381:10222..10392Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6381 10223..10392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6381.14190.1

>prot_H-paniculata_contig6381.14190.1 ID=prot_H-paniculata_contig6381.14190.1|Name=mRNA_H-paniculata_contig6381.14190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MLGRPNPYRKARAKGSIDDLMFDMDKRRHTSFRFQNYQNFITDRPGKLDE
RYRQKLSWCALDEETGKLDYLTEGGLSPNNGRRMSTSSVGSRGTMGGGDR
DSLLPSWDALKSNTTEGGSKSGDGNEDDSASASGKEGQ
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mRNA from alignment at H-paniculata_contig6381:4214..10392-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6381.14190.1 ID=mRNA_H-paniculata_contig6381.14190.1|Name=mRNA_H-paniculata_contig6381.14190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6179bp|location=Sequence derived from alignment at H-paniculata_contig6381:4214..10392- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTTGTGCTGTGGTGCGGGTATTTAGGTGTTGTGTTCAGCGGACTCACA
GTCACTATCCGTTGCAATTTTTTTTCTCGAGGAGAATAACCTAAAGTGTG
CCTGTGGAGCCGCCAGATCGAAGATCGCCGAGAAGATTGAGGGAGTAGCA
ACAACGAGGCAGAAGATATCATGTTAGGTCGACCGAATCCGTACCGCAAG
GCTCGTGCGAAGGGAAGCATCGATGACCTGATGTTCGACATGGACAAGCG
TCGCCATACCTCCTTTCGGTTTCAGAACTACCAGAACTTCATCACAGACC
GACCTGGGAAACTGGTAAGAACCATGCGAAGGGGAGAGATGGAGAGAGCA
ACGGCGCAAATTTCGCGATGGGCTCTGAGCTTAACCGGGTTTAGTGACTT
TGTCTGATATTTTGATATTTTGCAGGCGATGTGCTTCCAAGCCGACGAAA
CATGCGGCTGTTTGTGAGTCAGTACAATAGTAATAGTAACAAAAGTGAGG
CGGAATGCACGAGAGAGGAGACATGCAGCTAAATAAAATATGCAACAGCA
GGAGGATAGAAACAAGATAGATGGCAAGAGTCATGCATGGGGTCTTCGTT
GTCTAACAAACGATATTTTGGTCACATATCATAATCGTCTAATTTGAAGT
TCACACAAGGTCTACTCATAGGGTGTGTAAATGTCGAAAAGAGACAGGTG
TGACCCCATTACGTTTCGCGCAATCCCAACCTAACTTACACATGTACAGT
ATTTAGTAGATCGGCTATTGGATGGCATTGCGAAAATATACAGCAACAGT
AAATTGCACCCGTTGTTGTGCTGGTCGAAACGCTGTAGCCGCTGTAGTAG
TGTACGCTGGCTATGAGTGGTAAGCACGACCGAAGGTCACCCATTGCCCA
AAGACTGGTGGAAACTTTGACAGTCGCATAGACAAAGATAAATAATAGAG
TAGAGACAATCATTGGTATATACTTTTGGATACTCTCTGCACAGCGAGGC
CCAGCCGAAGTTTCGGAGATAGCCCAAGAGTTGCCTCGCGTGCTGTGTGC
ATGCAATCATAACTGTTTCGTTGTGCTTTCTGTACTCAACTGACTGTACT
TTTGTACAAACTGATGCTCTCTGTCGTAGTTGTCTAACGGGCTGTAAATA
GAATCATGAAACAAGGTTGACAGTTGCAAAGAGAGGGCTAAAATAGACAA
TCAATTTCCGGAGCTTCTCTCTCGTCCATGATGGGTCTGTGATAATACAT
ACGACCCAACGTCTAAGCTTTAGCGAAGTAAGTTCATTTATCAATAATTG
AGTGTTGTTATAATCACTGTCTACGAGTTCACCCTCTGGTTGTATTGTCT
GCTATCTTGTGGTGGTGTTTTGTTTGACCCGCTTGCCACGCAATACACTC
TCATCTGAAACACATACATATGAGGGTAAACTATACTCAATCTATACTAC
TCTATTTACATGGCGTTGGATAACACCCGGGTCACGGACATTTTTCAGTC
GCGTTTTCCCTCCAAAATTACACCGATGTACAGGGCTCGTGATATACCTT
GTTGGAAAGTTCTCGTAAAGTTCTGTCTATATACACATGCTCGTATGCTC
TTTCGACAACTCACAGTCAGAGCAAGGTCGTGCTCTCTCGAGAAAAATCG
AGTTTAAAGGAACCGAATCATTGGGCGTACCAAACGCCGTAAGTTGTGGT
ATGTGTCGGTTGAAGCGCAGACAGGCAACCGGCGAACAGTGAAAGACCGT
ACCTTGGCTTACGCGCATGTCATATCATCTGCACCTCGAGTGCTATCTAC
CATGAACATGGTTTTCAGCTCGATTATCTAGGGGCCTACCTACTACCTCA
CTACTGACTATATAATCCCACACCTGGTGTAAAAAGCGCGCGTCTCTGTA
TGCAACTACAAAAATACACTACAGAGTACATGATAGACACCGCGTCTTTT
CAAATGGCGCAAGTGTGCTTTATTCGTTTTCGTCGAGAACATTCGAGCTT
GAAAAGATCTTCAAACCTCATGAGTATATCGATGTTCAACGCGATGTATG
TGCCGTGTACAAATATAGTAGTCGGCGCTAAAAAGTACTACTGTTTGTGG
TCGGGTTTCGTACCGCTTTCAGGTCGAGAAAATTCGAAGGGGAAACGAAG
ATTATCACATGTTTTACCGAGTTTCATGTGACAGCGGCAGATTTTATCGC
GGCCCCTCAGGATGGCGGGTCTATCCGTTGATACGCTATCTGGTGTTATC
GGGCATCATGAACCCGCCCTGCGTCGTGTGCGGCAAGCAATCTAAGATAG
TACAATATAGGATGGACAGTTGAGAGCGTAGCGGCGTGTGGAGGTTTGGG
CGTCGAAAACCTTCTTGCTCTTTTGGATGCGTCATGCCGGAATCACGGGA
AGATCCGCTCGGAAAGTAGTTTTTCCCAATTGTATGTACTCTTGTCATTT
CTGCAGTTGCAATGGCTGTCCCCTCGAGTGTTTTCAACCCCCGCCTGCCT
GTGGTGTGCCGGACGTTGAAAAATAAACACTAGTGGCATCTCGAAGTTCC
GCCGCCCAAAAGGGGAGGGGTAGACGGGGGAGATGGAGACTTTTTTTTTT
TTTAGAGATGGCTGCCACAGCCAGTTGAGTTAAAACTCTGAACCTATTGT
AATAATTCCTCTGTATCCATGTTGAGGTCATGTCTTCAGTCTGCACTTGT
ATACACCTTATATAAGCAAAATTAACCCTTGTGATTGTGGGTCCGCAAAG
AACGAACATAAGGAACCTGGAAGTCCTACGGCGAAACCATGGCGAAAAAG
GGAGGCCAGGTCCTATTTGACAAGGGGGGGTGGGGGGGGGGGAGTCCGAT
CTCGTCGGGCTGGAGTATGGTCGATTGTACACTTGTCAGTGGACAGGTAG
GACAAGAACGACGGTAGCGCATGGTACGCCTGAGTGCCCTCCCTTCCCAC
TGTGGGTGCGACCGATTCTCTTAGCAACGACACGGACAACGTAGCTGTTG
TGGCACATCTTGATGTATTTTGCTGTCTGCACTGTACTGTGTGGGTGTCG
AAGTAGCTCCTTCGGGATCATGGTGTTGTCGGATCTGTTTGGCGTACAGC
AGTGTGCGGTATACACAGTCGCCATCGTGTTGTTGGTCTATCTGACTTGG
GGCTTTGTGCGTTACAGATACCTGATACACTTCGTCACTCATGATGTGAT
TTGTGCTTCACGTTTCAATGAAGTGCCGGCTGCTGTCGTCTTGGAACGCA
GAACCATGCCAATTCCCGTCTGTGTGTGGATGTCTGGAATAATAATTACA
GGACCGTCTATACTGTCCGTAGAGCTTCCTATCGTCGTAATCATGTCGTG
GGCGTTTGTCAAAAATGATTCCGAATCGGTTTCGATCTGTTTGCGAGAAG
GGATTGCAAAGGGATCGTACGCGTTCCGATGCCATTGAATCAATAAGGGA
TGACTTTCAAACTCTCTGTGCTGTCTTGTGGTAATTTGATTACACACGCA
GAACTTAGGGTAAGGCTAATTAGAAACGTGTCGTGTCCGTTACACTGTCC
GCAGATGTCAGAACAGAGAGAGCCGTGACAACCATGGTATGTTTAATTTC
ATGTGCTGGCGTGCGGTTTTGTGCGGCACACACACACACACACACACCAT
GTACAGTCACTCGCTCACTCGATTCTAGTTTGTGCTTCGCGTGTTGATCA
AATGCTGCTCTTATTGGAATCTAAAGTCGTGGCAACTCTTGTCTATGTAG
CTATTATAATCATTACAGATATGTTTGTACAGCTAAAACTCTCTCTCTCC
GTGGTGATGATCACAGAAAATCCCAGATCGTTTTTACTTGTTCAGCGAGC
TGGAATTTACCAGCGATTTTGTAAGGTCCGATGCCACAAGGGTTGACGTG
CCATTTCAAGGATTTACTGAAGAACGTGGTGCTTGAACATTTACCTCGCT
GGTTTCGAGGTTTGTCTTCTTTGGTACCCACAACCATAAACCGTAACTGG
AAAAAAATAGTGTCTGAAATGATAGCTGGTTTTTGTGATGTTGGTGGCAT
GGTTCTTTATACGCCACCTCGAACATATTTTGTCTTGTGGGCACCGTTAG
CACTGTCTGTTGGCGCACTTTTTTTTCCACAGGCGTTGTTTCTATTACTT
TTTTTTTTTTTTTTTCACCCCCGGAAGGTCGAGGCAAAAACCTTTTCCGC
TGCTTCCACTCTTCGGAAGATTACTAAGTGTCTGCATTTCCTTTAATGGA
TCAGAGTCATTTGTTCCTCTGCGGTGTAGGCGCCACCCCGGTTCGGCGGT
GAACCAGGTAGGCAGTGTAGGAATCCCACCTACTAAAAGACCTCTGACTA
GACTTTCAGTCATACTCAGTACACGAGCTACCCTACCCGTTCGGGCGTAG
GTCCGTGGTGTTTCTATTACTTTGGAGTTTTAAAGCTTGAGATAATGTTG
GGGAAAGTTTCTATGCAAGAGTCGTGTTGATTGATTACTTGACACAGACG
TGAAAAAAAATCCCTCTCTTGGAGGTGTTCAATTATATTCAAGTTCGTGC
TAATTATTTTATCCTCCCGTGCTTTCACTTTTTTTTTTTTTTTATCACAC
AGGATGAGAGATACAGACAGAAGCTTAGTTGGTGTGCCCTGGATGAAGGT
GAGCCACTCGCCCACTTTCGGCCCTTTTGTTGTAGCGGTGGTTCCTACCT
GTACATAAAAATTCCCGATGTACTACCAATCGTTAATCCCCACGTGAAAA
ACAGGAGCAGCTTACATCTTTGACATGATCACGGATATAGGGAGCACCCT
CTCTTTGGACAGAGAGACAATCCAGTGTACAGACAGCACATGCAGTACAA
AATACGGCCAGATAGTTGGCGTACGGTTCAGTAAACGAAAGCCTGCAGCG
CTCGACGTAATATTTGTCAGTTAAAGTTTTGATCCGAGAAGGGAGTCTCC
GGGGGCACCCCCAGAGAGTATGCCGTGAGAGTGTCCTCCGATGTTTCGGG
TCGTGTGTTCGCTCACGTGTACAAATGTCGAATTATAACGGTTCAGAATC
TAAGTGGGTATTGGTCCTCAAGACGTTACCTCTTGGCGATTACTCGGCAT
ATTGGTAAAGTTGAAGGCGAAAAATAAAGCAGCTTCTCTGTTTGCATTGA
TGATGCTTGTGACAGTTAGTGGTGATGACCTTGTTCTCGAAGCGCTTTCC
ACTTTGTGCGTAAGATTCAAGTTTTTTCTGTTTTTTTTCAAACATCACGT
GACAACAGAACAAAGTTCGAGGGGATTGGGATTAGGGTTAGGTCCGCCGC
TGGCGTATTTGATCGTGATGTTTCTACTGTATATATAGTACAGCTATAAT
TATGGGCTACCTGAGGTCAGCATACGTGTCGAAATCAATACTGTGACATA
CCACAGGGTGGGTTGATCGATTCGTGAGGACTGACGAGTTTGGCGGTGTC
TCGATGTTGAGTGAGTGCTACACTGCTGAATGGGTTGTGCAACATGTACA
TTTTTTTTTTTAACCCCCGGAAGGCTGAGGCAAAAACCTTTTCCGCTGCT
TCCACATTCTGCAACATGTACATTGAAGCATTTTATGCTACACACGCGAA
TTATACTTTTGTCCGGGGAATGAAATGTTATTCCCGTACCTCTTGCATTT
TAGTCTATTTTGCTGATGAGTGCATACACGACTGAAATGCGATCTAGGTC
TGCTGGTACAGGTGCAAATGTCCACGTGCCACTTCCGCTCCAAGCAGTGC
TGTAGAAATTTAGTATTATTATACTCTCATCCCCCTCCCCACATGAGCGA
TTGGCCATCGACAATCGCTCTGATGGGAACGACATCCCGTGCTACTCCTC
CCGAGGACACGTGGACAATGGTCTAAACAACTGCGATATGCAAAACATGT
AGTACCGCCCCCGCCCCCCTCTCCTCTTACCCGCATCCCCATATTGGTCA
CTCAGAAACCGGAAAGCTAGACTACCTGACGGAGGGGGGACTCTCCCCTA
ATAATGGCAGGCGTATGTCCACGTCTTCGGTGGGGTCACGCGGTACCATG
GGTGGCGGAGACAGGGATTCGTTGCTGCCGAGCTGGGACGCGCTGAAGAG
CAACACGACGGAGGGGGGCAGCAAGTCCGGGGATGGCAATGAAGATGACT
CGGCGTCGGCATCTGGGAAGGAGGGACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6381:4214..10392-

>mRNA_H-paniculata_contig6381.14190.1 ID=mRNA_H-paniculata_contig6381.14190.1|Name=mRNA_H-paniculata_contig6381.14190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig6381:4214..10392- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGGTCGACCGAATCCGTACCGCAAGGCTCGTGCGAAGGGAAGCAT
CGATGACCTGATGTTCGACATGGACAAGCGTCGCCATACCTCCTTTCGGT
TTCAGAACTACCAGAACTTCATCACAGACCGACCTGGGAAACTGATGTTA
GGTCGACCGAATCCGTACCGCAAGGCTCGTGCGAAGGGAAGCATCGATGA
CCTGATGTTCGACATGGACAAGCGTCGCCATACCTCCTTTCGGTTTCAGA
ACTACCAGAACTTCATCACAGACCGACCTGGGAAACTGGATGAGAGATAC
AGACAGAAGCTTAGTTGGTGTGCCCTGGATGAAGGATGAGAGATACAGAC
AGAAGCTTAGTTGGTGTGCCCTGGATGAAGAAACCGGAAAGCTAGACTAC
CTGACGGAGGGGGGACTCTCCCCTAATAATGGCAGGCGTATGTCCACGTC
TTCGGTGGGGTCACGCGGTACCATGGGTGGCGGAGACAGGGATTCGTTGC
TGCCGAGCTGGGACGCGCTGAAGAGCAACACGACGGAGGGGGGCAGCAAG
TCCGGGGATGGCAATGAAGATGACTCGGCGTCGGCATCTGGGAAGGAGGG
ACAGAAACCGGAAAGCTAGACTACCTGACGGAGGGGGGACTCTCCCCTAA
TAATGGCAGGCGTATGTCCACGTCTTCGGTGGGGTCACGCGGTACCATGG
GTGGCGGAGACAGGGATTCGTTGCTGCCGAGCTGGGACGCGCTGAAGAGC
AACACGACGGAGGGGGGCAGCAAGTCCGGGGATGGCAATGAAGATGACTC
GGCGTCGGCATCTGGGAAGGAGGGACAG
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