mRNA_H-paniculata_contig6381.14189.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6381.14189.1
Unique NamemRNA_H-paniculata_contig6381.14189.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6381.14189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6381contigH-paniculata_contig6381:585..1512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930738.6314256-CDS-H-paniculata_contig6381:586..7111622930738.6314256-CDS-H-paniculata_contig6381:586..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 587..711 -
1691481430.374449-CDS-H-paniculata_contig6381:586..7111691481430.374449-CDS-H-paniculata_contig6381:586..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 587..711 -
1622930738.651466-CDS-H-paniculata_contig6381:1331..15121622930738.651466-CDS-H-paniculata_contig6381:1331..1512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 1332..1512 -
1691481430.3837445-CDS-H-paniculata_contig6381:1331..15121691481430.3837445-CDS-H-paniculata_contig6381:1331..1512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6381 1332..1512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6381.14189.1prot_H-paniculata_contig6381.14189.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6381 587..1512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6381.14189.1

>prot_H-paniculata_contig6381.14189.1 ID=prot_H-paniculata_contig6381.14189.1|Name=mRNA_H-paniculata_contig6381.14189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
QDSGSLSPCVSGRTLIRTPPPSSARDSPSMLGDDGGSGGPRLTPGKPNSG
RSWVTPKFAIDAENRTPSTLHEDSPGDDHHHYTPPLPEHSVSVDNIRYGM
SR
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mRNA from alignment at H-paniculata_contig6381:585..1512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6381.14189.1 ID=mRNA_H-paniculata_contig6381.14189.1|Name=mRNA_H-paniculata_contig6381.14189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=928bp|location=Sequence derived from alignment at H-paniculata_contig6381:585..1512- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACTCTGGGAGCCTGTCACCGTGCGTATCCGGTCGCACTTTGATAAG
AACTCCCCCTCCCTCGTCGGCGAGGGATTCGCCGTCGATGTTGGGGGATG
ACGGTGGCAGCGGAGGACCCCGCCTGACGCCTGGCAAGCCTAACAGCGGT
CGCTCGTGGGTGACGCCCAAGTTCGCCATAGGTGTGTGTGTGTGTGTGTG
TTTGTATGTTTGTGTGTTTGTGTCATTTTTGTACATCTAGCGTGCTGTGT
TTCAGCTTTGAGAAATGTATTGTATAGCTCTGCTTCTACCCTTCGGACGA
GTGTGAGTATTACGAATATTCTGCAATATATATTTTTTTTCATGTATTTG
CCTGAAGGTTTGTCACAGCATGGGCATCTTTTTCTTCATTTTTTCATGTG
CCATGGATCATCTACGAGTACTCTAAGTGATGACAATAGAAGGGATAAAT
AGAGGGGGAATCAAGACTTGAGTGGTTTTATGTGTTTCTTGCACAGCTGA
AATCCTCATGAATAGTTGCGTTTTTTTTTTAACTTCCATTTTTGGTCTGA
ACCGTTAGAAAAATTTGTTGATTTTCCGGAGGTGTGAATCCAGTCGTTGG
CACGACCTCTCGTTGATTTTTTTTTTTTTCATTAATATGAATTATTTGTC
ACATTAGGTATGACTGTAGTTGAAAATTTGGTGATTTGGATTACAAAAGT
AAGCGTTTACTGGGAGGTAAAATATGTTTTGGACGACCACTTTCTTTCCT
TATTTTTTTACGATAATTATTATCCCTTTGTTTTTCGTCATGATACCGCA
GACGCTGAAAATCGTACTCCCAGTACCCTCCATGAAGATTCTCCGGGAGA
TGACCACCATCACTATACTCCTCCGTTACCGGAGCACAGCGTATCTGTCG
ACAACATCCGGTATGGCATGTCTCGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig6381:585..1512-

>mRNA_H-paniculata_contig6381.14189.1 ID=mRNA_H-paniculata_contig6381.14189.1|Name=mRNA_H-paniculata_contig6381.14189.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig6381:585..1512- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACTCTGGGAGCCTGTCACCGTGCGTATCCGGTCGCACTTTGATAAG
AACTCCCCCTCCCTCGTCGGCGAGGGATTCGCCGTCGATGTTGGGGGATG
ACGGTGGCAGCGGAGGACCCCGCCTGACGCCTGGCAAGCCTAACAGCGGT
CGCTCGTGGGTGACGCCCAAGTTCGCCATAGCAGGACTCTGGGAGCCTGT
CACCGTGCGTATCCGGTCGCACTTTGATAAGAACTCCCCCTCCCTCGTCG
GCGAGGGATTCGCCGTCGATGTTGGGGGATGACGGTGGCAGCGGAGGACC
CCGCCTGACGCCTGGCAAGCCTAACAGCGGTCGCTCGTGGGTGACGCCCA
AGTTCGCCATAGACGCTGAAAATCGTACTCCCAGTACCCTCCATGAAGAT
TCTCCGGGAGATGACCACCATCACTATACTCCTCCGTTACCGGAGCACAG
CGTATCTGTCGACAACATCCGGTATGGCATGTCTCGGACGCTGAAAATCG
TACTCCCAGTACCCTCCATGAAGATTCTCCGGGAGATGACCACCATCACT
ATACTCCTCCGTTACCGGAGCACAGCGTATCTGTCGACAACATCCGGTAT
GGCATGTCTCGG
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