mRNA_H-paniculata_contig638.14188.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig638.14188.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI) HSP 1 Score: 394 bits (1012), Expect = 1.290e-119 Identity = 241/415 (58.07%), Postives = 301/415 (72.53%), Query Frame = 1
Query: 172 GANSAGVCETCGIGTSAFAGAXXXXXXXXXSYGVLXXXXTCEPCPLGTYLNATGSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTVAFSDGGGXXXXXXXXXXSTYAEAQNMNCTQCVGGFYSNNIGLDACAECLEDEISYNAHAQCLACDTNDTCPLGPNGDYCSNYGSCFLGVCSCSDGFYGVDCANGTRDGCAGVFGFAFESTMTKTSESSGTITLTLVRLAGTDGEMEVTVNHTDGNASQGLDFGGTWPTQVTFSSGETEASVSVSLIHDSDPDEGCELLVLEVTNVSSANGSVVVVGGIHDVSAAAVVAIEEVDFNGAVLETKLPVGVLDGAGGLSPIAAEVLVAEFSSTWSSNVSLSVVGTTPSNRSRALPLDILFVAEADGSLSDDLGRLTQLLPGLAAEVNT 1416
GA+S G C+TC GT A G+ XXXX Y L TC+ CP+GTY++ TGS S XXXXXXXXXXXXXXXXXXXXXXXXXXXX +GGG STY AQ MNCT+CVGGF+++ IG D C EC E+++SY+AH CLAC TN +CP+GPNG+ CS G C+LGVC CS GF VDC++GT DGC GVFGF ++S + T+ES GT++LTLVRL GTDGE+ V ++ T GNA++ DFGGTWP QV F G+TE++VS+ ++HD+DPDEGCE + + VT VS GS VV GGIHDVSA AVV IEE DF AV T LP G+ G G LSP AEV++A+ ++TWSS+V+LSVVG TP+NRS ALPLD+LF+AE+ +++ DL RL +LLPGL AE+ +
Sbjct: 677 GASSDGACQTCLSGTFAGVGSSSXXXXVAGQYSTLDGSETCDLCPVGTYVDVTGSMSIGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGGGCQDCPRGEYTSTYEAAQEMNCTKCVGGFFADTIGSDLCTECPEEQLSYSAHETCLACITNTSCPIGPNGETCSGVGDCYLGVCDCSTGFDSVDCSSGTCDGCGGVFGFDYDSAVVGTAESGGTVSLTLVRLVGTDGEVTVDLDVTGGNATEVSDFGGTWPIQVVFDDGQTESAVSLPVVHDNDPDEGCEGVTIGVTAVSGT-GSAVVNGGIHDVSAEAVVTIEEDDFTSAVRSTTLPTGLGVGGGELSPATAEVVIADATATWSSDVTLSVVGVTPTNRSTALPLDVLFLAESHSTVATDLERLVELLPGLVAEMQS 1090 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig638.14188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig638.14188.1 >prot_H-paniculata_contig638.14188.1 ID=prot_H-paniculata_contig638.14188.1|Name=mRNA_H-paniculata_contig638.14188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=474bp AGGTTSCSPCPAGTIGEYIAGGNATDACRSCEAGQYTELDGSASCDDCAAback to top mRNA from alignment at H-paniculata_contig638:28887..33681+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig638.14188.1 ID=mRNA_H-paniculata_contig638.14188.1|Name=mRNA_H-paniculata_contig638.14188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4795bp|location=Sequence derived from alignment at H-paniculata_contig638:28887..33681+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig638:28887..33681+ >mRNA_H-paniculata_contig638.14188.1 ID=mRNA_H-paniculata_contig638.14188.1|Name=mRNA_H-paniculata_contig638.14188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2844bp|location=Sequence derived from alignment at H-paniculata_contig638:28887..33681+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |