mRNA_H-paniculata_contig638.14186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig638.14186.1
Unique NamemRNA_H-paniculata_contig638.14186.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig638.14186.1 vs. uniprot
Match: D7G731_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G731_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 1.180e-122
Identity = 244/359 (67.97%), Postives = 281/359 (78.27%), Query Frame = 1 
Query:    1 DGGRRAGEDKAEARRIKQQLEVAERRMKNSLYINEAHESRAALATTREREANARATEFERQLSRALEKLESIERRDTITGLHASCIRDEEAIHMTEQELRAHQLDPELYLPVNTARRRQLARSEQRLQRLRLRHASQSAALVQVEVVERLHSDLRMAAGSGDVAATAKVLEAASGLSVNIPDETGLSAFFYACGQANPELVKVLLEAGGDVLDGENKITGLIIAARKGEVNTVRALXXXXADVSARDSAGGTALHIAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLASPTA--KGAS--------AELAILLLEWGASVDIKNSEGLTAVSAAHETRNHALVRAYRAFFGEDTGL 1047
            DG  RA +   EARRIK+QLEVAERR+KNS YINEAHES AA AT RE+EANARA E  R+L RALEKLESIER+D I  L  SC RDEE     E+ELRAHQ+DPELYLPVNTA+RRQ+ARSE+RL+RLRLRH SQSAAL Q +  ERLH+DLR AAG GD+  T K L+  SG+SVN+PD++GLSAF YACGQAN ELV++L++AGGDVLDG+  ITGLIIAARKG +  V+ L    ADV ARDSAGGTALH A +     XXXXXXXXXXXXXXXXXXXXXXXXMLAS ++   G S        A++A LLLEWGAS DIKNS+GLT +SAA +TRN A+V AYR FFGED+GL
Sbjct:  161 DGRHRALDKDNEARRIKRQLEVAERRVKNSFYINEAHESLAAKATEREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAERELRAHQMDPELYLPVNTAKRRQVARSEKRLRRLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLD--SGISVNVPDQSGLSAFLYACGQANAELVQILVDAGGDVLDGDGTITGLIIAARKGTMGVVQTLLEAGADVCARDSAGGTALHAATLHRHVDXXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKDGGSDVRGGETGADVAGLLLEWGASADIKNSKGLTPISAALDTRNRAMVLAYREFFGEDSGL 517
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BLAST of mRNA_H-paniculata_contig638.14186.1 vs. uniprot
Match: A0A7R9VLG3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLG3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.070e-13
Identity = 61/188 (32.45%), Postives = 89/188 (47.34%), Query Frame = 1 
Query:  460 LRMAAGSGDVAATAKVLEAASGLSVNIPDETGLSAFFYACGQANPELVKVLLEAGGDVLDGENKITGLIIAARKGEVNTVRALXXXXADVSARDSAGGTALHIAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLASPT-----AKGASAELAILLLEWGASVDIKNSEGLTAVSAAHETRNHALV 1008
            +R A+  GD     +++E   G+SVN+PD+ G SAF YACG  + + V++++++  D+ D + + T LI A R G    VR L    ADV +RD  G TAL IA            XXXX                          A+    E+A LLL+ GA    KN+ G+T +  A   R+  +V
Sbjct:    1 MRQASSRGDTKCIKQLME--QGVSVNVPDKAGFSAFKYACGGGHLDAVRLMVQSA-DLNDADGRTTALIAATRNGHAPVVRFLLEEGADVESRDDGGNTALLIACAGGYVDCARALXXXXKKGGRRGGGADPNAANAVGNAGLHLCARDGREEIASLLLDRGAEAGAKNASGMTPMEIAKARRHQGVV 185
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BLAST of mRNA_H-paniculata_contig638.14186.1 vs. uniprot
Match: A0A7S2NX54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NX54_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.540e-7
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  523 GLSVNIPDETGLSAFFYACGQANPELVKVLL---EAGGDVLDGENKITGLIIAARKGEVNTVRALXXXXADVSARDSAGGTALHI 768
            G SVN PDE+G SAF YACGQ + ++VK ++   EA  +  D E  +  LI+AA+  +   +  L    AD + +D  G TALHI
Sbjct:   22 GFSVNFPDESGFSAFKYACGQGSIDVVKYIIDQDEADINYCD-EKSMPPLILAAKNAQDEVLECLLNGGADANVKDHNGRTALHI 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig638.14186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G731_ECTSI1.180e-12267.97Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A7R9VLG3_9STRA1.070e-1332.45Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2NX54_9STRA1.540e-742.35Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig638contigH-paniculata_contig638:20442..21845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score377.1
Seed ortholog evalue8.9e-102
Seed eggNOG ortholog2880.D7G731
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_011230.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1047
Cds size1047
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930738.1603563-CDS-H-paniculata_contig638:20441..208071622930738.1603563-CDS-H-paniculata_contig638:20441..20807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 20442..20807 -
1691481430.148265-CDS-H-paniculata_contig638:20441..208071691481430.148265-CDS-H-paniculata_contig638:20441..20807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 20442..20807 -
1622930738.1781251-CDS-H-paniculata_contig638:21164..218451622930738.1781251-CDS-H-paniculata_contig638:21164..21845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 21165..21845 -
1691481430.1617243-CDS-H-paniculata_contig638:21164..218451691481430.1617243-CDS-H-paniculata_contig638:21164..21845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 21165..21845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig638.14186.1prot_H-paniculata_contig638.14186.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig638 20442..21845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig638.14186.1

>prot_H-paniculata_contig638.14186.1 ID=prot_H-paniculata_contig638.14186.1|Name=mRNA_H-paniculata_contig638.14186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=349bp
DGGRRAGEDKAEARRIKQQLEVAERRMKNSLYINEAHESRAALATTRERE
ANARATEFERQLSRALEKLESIERRDTITGLHASCIRDEEAIHMTEQELR
AHQLDPELYLPVNTARRRQLARSEQRLQRLRLRHASQSAALVQVEVVERL
HSDLRMAAGSGDVAATAKVLEAASGLSVNIPDETGLSAFFYACGQANPEL
VKVLLEAGGDVLDGENKITGLIIAARKGEVNTVRALLEAGADVSARDSAG
GTALHIAVVCGHMEASRVLLEGGSDSNAIDLGTNTPLHMLASPTAKGASA
ELAILLLEWGASVDIKNSEGLTAVSAAHETRNHALVRAYRAFFGEDTGL
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mRNA from alignment at H-paniculata_contig638:20442..21845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig638.14186.1 ID=mRNA_H-paniculata_contig638.14186.1|Name=mRNA_H-paniculata_contig638.14186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig638:20442..21845- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGAGGACGCAGGGCCGGAGAAGATAAAGCCGAAGCTAGGCGAATCAA
GCAGCAATTAGAGGTTGCAGAGCGAAGAATGAAAAACTCACTCTATATCA
ATGAAGCGCATGAGAGCCGCGCTGCCCTGGCCACCACGCGAGAACGGGAA
GCAAACGCCCGTGCCACTGAATTCGAGCGTCAGCTTAGTCGCGCCCTAGA
AAAGTTAGAATCTATTGAGCGACGGGATACCATTACTGGCCTCCATGCGT
CTTGCATCCGCGACGAAGAAGCGATCCACATGACTGAGCAAGAGCTACGG
GCACACCAACTTGACCCCGAGCTCTACCTACCTGTAAATACGGCTCGACG
ACGGCAGTTGGCACGTTCAGAGCAACGCCTGCAACGCCTTAGGTTACGGC
ATGCCAGCCAATCTGCCGCATTAGTTCAGGTGGAAGTTGTAGAAAGGTTA
CATTCGGATCTGCGGATGGCTGCGGGGTCGGGAGATGTAGCAGCAACCGC
TAAGGTTTTGGAAGCCGCTAGCGGACTATCCGTCAATATTCCTGACGAAA
CAGGTCTCTCGGCCTTCTTTTATGCTTGTGGGCAGGCGAACCCAGAACTT
GTGAAAGTATTGTTAGAGGCCGGCGGAGATGTGTTGGATGGCGAAAACAA
GATCACGGGACTTATAATCGCTGCTCGCAAGGTACGTAACATAGCCTCTT
TTCGGCGTCGCACCAACCCACAAGATGCACTTGGGATGGGTTCGACACGT
GTGAACAGGATGCCGTATTTTACAAACAATAATAGATGAGAGCTTTATGA
ATCCAAATACCTGCCCGCTCGTTTAGGGTTGTCCATGTTTGCCAACTCTC
CGTAACAAAAAAACAAAGGCCTGGCAGAACGGAGCCGTCGCCGTCGGACC
ATTATGAGGCGAGATCCGATAATTAATAATGTTCCGCTCTCAGGTACCTG
TGAGGAGGGAGTAAAATTCACGTCGTCGAAATATTCATACAGTTTTTCAT
CTGTAACCTTGCTTCTCGCGTCGCCAATTCCTCTCAAGGGAGAGGTTAAC
ACTGTCCGAGCCTTACTGGAAGCCGGGGCGGACGTTTCGGCGCGTGATTC
CGCCGGGGGTACCGCCCTCCATATTGCTGTTGTCTGCGGACACATGGAGG
CATCCCGAGTACTACTTGAGGGCGGTTCTGATAGCAACGCCATCGATCTG
GGAACTAATACCCCTCTGCACATGCTTGCCTCACCTACAGCGAAAGGGGC
TAGCGCGGAGCTGGCAATATTGTTGTTGGAATGGGGAGCGTCTGTTGACA
TCAAGAACTCGGAGGGACTAACCGCGGTGTCGGCTGCTCACGAGACTAGA
AATCACGCATTGGTCCGTGCGTACCGTGCGTTTTTCGGTGAAGACACTGG
ACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig638:20442..21845-

>mRNA_H-paniculata_contig638.14186.1 ID=mRNA_H-paniculata_contig638.14186.1|Name=mRNA_H-paniculata_contig638.14186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2094bp|location=Sequence derived from alignment at H-paniculata_contig638:20442..21845- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGAGGACGCAGGGCCGGAGAAGATAAAGCCGAAGCTAGGCGAATCAA
GCAGCAATTAGAGGTTGCAGAGCGAAGAATGAAAAACTCACTCTATATCA
ATGAAGCGCATGAGAGCCGCGCTGCCCTGGCCACCACGCGAGAACGGGAA
GCAAACGCCCGTGCCACTGAATTCGAGCGTCAGCTTAGTCGCGCCCTAGA
AAAGTTAGAATCTATTGAGCGACGGGATACCATTACTGGCCTCCATGCGT
CTTGCATCCGCGACGAAGAAGCGATCCACATGACTGAGCAAGAGCTACGG
GCACACCAACTTGACCCCGAGCTCTACCTACCTGTAAATACGGCTCGACG
ACGGCAGTTGGCACGTTCAGAGCAACGCCTGCAACGCCTTAGGTTACGGC
ATGCCAGCCAATCTGCCGCATTAGTTCAGGTGGAAGTTGTAGAAAGGTTA
CATTCGGATCTGCGGATGGCTGCGGGGTCGGGAGATGTAGCAGCAACCGC
TAAGGTTTTGGAAGCCGCTAGCGGACTATCCGTCAATATTCCTGACGAAA
CAGGTCTCTCGGCCTTCTTTTATGCTTGTGGGCAGGCGAACCCAGAACTT
GTGAAAGTATTGTTAGAGGCCGGCGGAGATGTGTTGGATGGCGAAAACAA
GATCACGGGACTTATAATCGCTGCTCGCAAGGATGGAGGACGCAGGGCCG
GAGAAGATAAAGCCGAAGCTAGGCGAATCAAGCAGCAATTAGAGGTTGCA
GAGCGAAGAATGAAAAACTCACTCTATATCAATGAAGCGCATGAGAGCCG
CGCTGCCCTGGCCACCACGCGAGAACGGGAAGCAAACGCCCGTGCCACTG
AATTCGAGCGTCAGCTTAGTCGCGCCCTAGAAAAGTTAGAATCTATTGAG
CGACGGGATACCATTACTGGCCTCCATGCGTCTTGCATCCGCGACGAAGA
AGCGATCCACATGACTGAGCAAGAGCTACGGGCACACCAACTTGACCCCG
AGCTCTACCTACCTGTAAATACGGCTCGACGACGGCAGTTGGCACGTTCA
GAGCAACGCCTGCAACGCCTTAGGTTACGGCATGCCAGCCAATCTGCCGC
ATTAGTTCAGGTGGAAGTTGTAGAAAGGTTACATTCGGATCTGCGGATGG
CTGCGGGGTCGGGAGATGTAGCAGCAACCGCTAAGGTTTTGGAAGCCGCT
AGCGGACTATCCGTCAATATTCCTGACGAAACAGGTCTCTCGGCCTTCTT
TTATGCTTGTGGGCAGGCGAACCCAGAACTTGTGAAAGTATTGTTAGAGG
CCGGCGGAGATGTGTTGGATGGCGAAAACAAGATCACGGGACTTATAATC
GCTGCTCGCAAGGGAGAGGTTAACACTGTCCGAGCCTTACTGGAAGCCGG
GGCGGACGTTTCGGCGCGTGATTCCGCCGGGGGTACCGCCCTCCATATTG
CTGTTGTCTGCGGACACATGGAGGCATCCCGAGTACTACTTGAGGGCGGT
TCTGATAGCAACGCCATCGATCTGGGAACTAATACCCCTCTGCACATGCT
TGCCTCACCTACAGCGAAAGGGGCTAGCGCGGAGCTGGCAATATTGTTGT
TGGAATGGGGAGCGTCTGTTGACATCAAGAACTCGGAGGGACTAACCGCG
GTGTCGGCTGCTCACGAGACTAGAAATCACGCATTGGTCCGTGCGTACCG
TGCGTTTTTCGGTGAAGACACTGGACTAGGAGAGGTTAACACTGTCCGAG
CCTTACTGGAAGCCGGGGCGGACGTTTCGGCGCGTGATTCCGCCGGGGGT
ACCGCCCTCCATATTGCTGTTGTCTGCGGACACATGGAGGCATCCCGAGT
ACTACTTGAGGGCGGTTCTGATAGCAACGCCATCGATCTGGGAACTAATA
CCCCTCTGCACATGCTTGCCTCACCTACAGCGAAAGGGGCTAGCGCGGAG
CTGGCAATATTGTTGTTGGAATGGGGAGCGTCTGTTGACATCAAGAACTC
GGAGGGACTAACCGCGGTGTCGGCTGCTCACGAGACTAGAAATCACGCAT
TGGTCCGTGCGTACCGTGCGTTTTTCGGTGAAGACACTGGACTA
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