mRNA_H-paniculata_contig63777.14177.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63777.14177.1
Unique NamemRNA_H-paniculata_contig63777.14177.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: A0A6H5KWG9_9PHAE (ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG9_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.400e-43
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:   16 ARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEYM 294
            ARVAQ+EWA T+FAER+RVL+CLQR+ILDNQ+DIARVASRDSGK + DALLAEVMITCEKIR +SS+GE WL RE RP+GPLVFYKKAYVEYM
Sbjct:  115 ARVAQEEWALTTFAERKRVLACLQRYILDNQDDIARVASRDSGKPVVDALLAEVMITCEKIRCISSNGEGWLARETRPTGPLVFYKKAYVEYM 207
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: D7G3G9_ECTSI (Bifunctional Aldehyde Dehydrogenase/Phosphoglucomutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G9_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 4.020e-43
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:   16 ARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEYM 294
            ARVAQ+EWA T+FAERRRVL+CLQR+ILDNQ+DIARVASRDSGK + DALLAEVMITCEKIR +SS+GE WL RE RP+GPLVFYKKAYVEYM
Sbjct:  115 ARVAQEEWALTTFAERRRVLACLQRYILDNQDDIARVASRDSGKPVVDALLAEVMITCEKIRCISSNGEGWLARETRPTGPLVFYKKAYVEYM 207
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: A0A7S2XYE7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.320e-31
Identity = 58/92 (63.04%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:   16 ARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEY 291
            AR+AQ+EW KTSF+ERRRVL  +Q +IL+++EDI RVASRDSGK   DA+L EV+ TCEKIR + ++GEKWL  E RP+GP++ +K AYVEY
Sbjct:  130 ARLAQQEWCKTSFSERRRVLQVVQEYILNHEEDICRVASRDSGKPKLDAMLGEVITTCEKIRCIQANGEKWLKPEYRPTGPVMMHKNAYVEY 221
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: B7FZZ1_PHATC (Aldehyde dehydrogenase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZZ1_PHATC)

HSP 1 Score: 122 bits (305), Expect = 1.790e-30
Identity = 58/93 (62.37%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:   16 ARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEYM 294
            A +AQKEWA+TSFA+RRRVL  +Q++I+ + EDI RVASRDSGK   DALL EV+ TCEKIRAV+++GE WL    RP+GPL+ +K A+VEY+
Sbjct:   31 ASIAQKEWARTSFAQRRRVLRTIQKYIVHHVEDICRVASRDSGKPKVDALLGEVLTTCEKIRAVNAYGELWLRPSYRPTGPLMLHKTAFVEYV 123
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: A0A7R9UB35_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB35_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.440e-29
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:   16 ARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEY 291
            A+ AQ+ W  T+FAERRRVL  +Q++I  +  +I RVASRDSGK + DALL EV+ TCEKIR V ++GEKWL REVRP+GPL+ +K +YVEY
Sbjct:  116 AKKAQEAWVNTTFAERRRVLMTMQKYITGHVHEICRVASRDSGKPLLDALLGEVLTTCEKIRCVCANGEKWLQREVRPNGPLMMHKTSYVEY 207
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: A0A835YP03_9STRA (Aldehyde/histidinol dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP03_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.830e-29
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:   16 ARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEY 291
            A  AQ EWAKTSF ER+RVL  +Q + L +Q+DI RVA RDSGKS  DALL EV++TCEK R   +HG  WL RE RP+GPL+ +K AYVEY
Sbjct:   41 AAAAQVEWAKTSFKERKRVLQTMQEYFLAHQDDIVRVACRDSGKSKVDALLGEVLVTCEKFRCTWAHGAAWLAREKRPAGPLLPHKTAYVEY 132
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: A0A6S8YE02_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YE02_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.190e-27
Identity = 51/93 (54.84%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   16 ARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEYM 294
            A  AQK W++T++A+RR V+  +Q++I+++ EDI RV +RDSGK   DALL EVM TCEKIR ++++GE+WL R+ RPSGP++ +K AYVEY+
Sbjct:  120 AAKAQKSWSRTTYAQRRLVMRTIQKYIVNHVEDICRVCTRDSGKPKVDALLGEVMTTCEKIRTINANGEEWLRRQYRPSGPMMMHKTAYVEYV 212
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: A0A7S1Y488_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y488_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.370e-27
Identity = 53/93 (56.99%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:   16 ARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEYM 294
            A  AQKEWA T+FA+RRRVL  +Q++I+ + EDI RVA RDSGK+  DALL EV+ TCEKIR ++++GE WL    R +GP++ +K AYVEY+
Sbjct:  121 AAEAQKEWATTTFAQRRRVLRTIQKYIVAHVEDICRVACRDSGKTKVDALLGEVLTTCEKIRTINANGELWLRPSYRSTGPVMVHKTAYVEYV 213
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: A0A830I212_9CHLO (Aldedh domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830I212_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 2.190e-26
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    1 GTRDSARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEYM 294
            G  + A  AQ EW  +SF  RR++L  LQ+FIL NQE I RVASRDSGK + DA   EVM+TCEKI  V S GEKWL  E R SG ++FYKKA+VE++
Sbjct:  164 GVCERASQAQNEWKHSSFHTRRQLLRILQKFILANQETICRVASRDSGKPLVDAAFGEVMVTCEKINWVLSEGEKWLKPEKRSSGTMMFYKKAWVEFV 261
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BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Match: UPI000867AAFD (Aldedh-domain-containing protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI000867AAFD)

HSP 1 Score: 109 bits (272), Expect = 9.650e-26
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 GTRDSARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKSMTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEY 291
            G  D A  AQ  WAKTSFAERR+VL+ LQRF+L+NQ++IARVA RD+GK+M DA L E+++T EKIR    HGE  L  E +P+  L+ YKKA V Y
Sbjct:  108 GAIDRAEKAQVAWAKTSFAERRKVLNTLQRFLLENQDEIARVACRDTGKTMVDAALGEILVTTEKIRWTLKHGEDALKPEKKPTNLLMIYKKAEVRY 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63777.14177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWG9_9PHAE2.400e-4381.72ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G3G9_ECTSI4.020e-4382.80Bifunctional Aldehyde Dehydrogenase/Phosphoglucomu... [more]
A0A7S2XYE7_9STRA2.320e-3163.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B7FZZ1_PHATC1.790e-3062.37Aldehyde dehydrogenase n=1 Tax=Phaeodactylum trico... [more]
A0A7R9UB35_9STRA3.440e-2960.87Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835YP03_9STRA4.830e-2961.96Aldehyde/histidinol dehydrogenase n=1 Tax=Tribonem... [more]
A0A6S8YE02_9STRA1.190e-2754.84Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1Y488_9STRA2.370e-2756.99Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A830I212_9CHLO2.190e-2658.16Aldedh domain-containing protein n=1 Tax=Pycnococc... [more]
UPI000867AAFD9.650e-2657.73Aldedh-domain-containing protein n=1 Tax=Saitoella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63777contigH-paniculata_contig63777:109..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue8.3e-37
Seed eggNOG ortholog2880.D7G3G9
Preferred nameMSC7
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K10661
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko04141,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map04141
KEGG ModuleM00135
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0003674,GO:0003824,GO:0004029,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016620,GO:0016903,GO:0022402,GO:0022414,GO:0031224,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046483,GO:0048285,GO:0051321,GO:0055114,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0140013,GO:1901360,GO:1903046
EggNOG free text desc.aldehyde dehydrogenase (NAD) activity
EggNOG OGsCOG1012@1,COG1109@1,KOG1220@2759,KOG2454@2759
EC1.2.1.3,2.3.2.27
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.0160708-CDS-H-paniculata_contig63777:108..2541622930737.0160708-CDS-H-paniculata_contig63777:108..254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63777 109..254 -
1691481429.548664-CDS-H-paniculata_contig63777:108..2541691481429.548664-CDS-H-paniculata_contig63777:108..254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63777 109..254 -
1622930737.0299525-CDS-H-paniculata_contig63777:572..7231622930737.0299525-CDS-H-paniculata_contig63777:572..723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63777 573..723 -
1691481429.5622587-CDS-H-paniculata_contig63777:572..7231691481429.5622587-CDS-H-paniculata_contig63777:572..723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63777 573..723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63777.14177.1prot_H-paniculata_contig63777.14177.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63777 109..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63777.14177.1

>prot_H-paniculata_contig63777.14177.1 ID=prot_H-paniculata_contig63777.14177.1|Name=mRNA_H-paniculata_contig63777.14177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
GTRDSARVAQKEWAKTSFAERRRVLSCLQRFILDNQEDIARVASRDSGKS
MTDALLAEVMITCEKIRAVSSHGEKWLGREVRPSGPLVFYKKAYVEYM*
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mRNA from alignment at H-paniculata_contig63777:109..723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63777.14177.1 ID=mRNA_H-paniculata_contig63777.14177.1|Name=mRNA_H-paniculata_contig63777.14177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=615bp|location=Sequence derived from alignment at H-paniculata_contig63777:109..723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACACGTGACAGCGCGCGAGTGGCTCAGAAGGAATGGGCGAAGACTAG
CTTCGCTGAGCGGAGGCGTGTTTTGTCATGCCTCCAGCGTTTTATTCTGG
ATAACCAAGAAGATATCGCTAGGGTCGCGTCCAGGGATTCAGGGAAGTCA
AGTGAGCACTTGTTTTTTTCTCTTTTATGTGCCCGTCTTCCCTCCCCTCC
CCGCCCGCCTCCATATCCTCGATATCCTTGATGTTGGTTAATTGAGGTAC
GCTGTTGTTGTACTGTTGGCGGCGAAAAAGAAGTATTTGAGTTTGGTCGC
CAAAAACACGAAAAAAAAACAAGTCTAACCCTAACCCTAACCCTAACCCT
AAGTGGGGGCGGAGGCAAATGATGGGCGGAAATTGTAACTTGAAAAGCAC
ACACATTGCCATGTGCCCTGATTTTTTTTCGGCTGAAATTGTGTGTACCC
GATTCTGGTCGCTTGCTAGTGACGGACGCTCTGCTGGCGGAGGTGATGAT
CACTTGCGAAAAGATCCGTGCGGTGAGCAGCCATGGGGAGAAGTGGTTGG
GGAGGGAGGTCAGGCCTTCGGGACCCCTGGTTTTCTATAAAAAAGCGTAC
GTGGAGTACATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig63777:109..723-

>mRNA_H-paniculata_contig63777.14177.1 ID=mRNA_H-paniculata_contig63777.14177.1|Name=mRNA_H-paniculata_contig63777.14177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig63777:109..723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACACGTGACAGCGCGCGAGTGGCTCAGAAGGAATGGGCGAAGACTAG
CTTCGCTGAGCGGAGGCGTGTTTTGTCATGCCTCCAGCGTTTTATTCTGG
ATAACCAAGAAGATATCGCTAGGGTCGCGTCCAGGGATTCAGGGAAGTCA
AGGCACACGTGACAGCGCGCGAGTGGCTCAGAAGGAATGGGCGAAGACTA
GCTTCGCTGAGCGGAGGCGTGTTTTGTCATGCCTCCAGCGTTTTATTCTG
GATAACCAAGAAGATATCGCTAGGGTCGCGTCCAGGGATTCAGGGAAGTC
AATGACGGACGCTCTGCTGGCGGAGGTGATGATCACTTGCGAAAAGATCC
GTGCGGTGAGCAGCCATGGGGAGAAGTGGTTGGGGAGGGAGGTCAGGCCT
TCGGGACCCCTGGTTTTCTATAAAAAAGCGTACGTGGAGTACATGTGATG
ACGGACGCTCTGCTGGCGGAGGTGATGATCACTTGCGAAAAGATCCGTGC
GGTGAGCAGCCATGGGGAGAAGTGGTTGGGGAGGGAGGTCAGGCCTTCGG
GACCCCTGGTTTTCTATAAAAAAGCGTACGTGGAGTACATGTGA
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