mRNA_H-paniculata_contig63753.14175.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63753.14175.1
Unique NamemRNA_H-paniculata_contig63753.14175.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: D7G8M9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8M9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.370e-22
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 QEHPEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVFR 153
            +E P+ Y+P WG FCSWGIS EDWW  D LGP ADPN WLIT DG LH FR
Sbjct:  148 EESPKSYIPQWGGFCSWGISREDWWNADELGPPADPNQWLITDDGGLHFFR 198          
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: D7G5N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.190e-18
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   10 PEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVFR 153
            P  Y+PAWG FC++GI+ EDWWT  +LGP +DPNSWLIT D VL +FR
Sbjct:  131 PLDYIPAWGGFCAYGIAAEDWWTVSTLGPPSDPNSWLITDDNVLRIFR 178          
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: A0A7S2CFY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFY1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.940e-13
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   10 PEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVF 150
            P  Y P WG FC +GIS E WWTK +LGPDA+PN W I  DG L+ F
Sbjct:  130 PTSYFPKWGGFCGYGISEETWWTKSTLGPDANPNVWSII-DGDLYFF 175          
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: A0A6H5JXZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.480e-13
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 QEHPEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVFR 153
            +  PEKY+PAWG FCS+GIS+ED W  D LGP ++P+ WLI  D  L++FR
Sbjct:  159 ESDPEKYLPAWGGFCSFGISHEDIWGPDVLGPPSNPDIWLIEDDR-LYLFR 208          
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: A0A6V1WB01_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WB01_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 4.810e-13
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   10 PEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVFRR 156
            PEKY+P +GAFCSWGIS E +WT  +LGP  DPN W I +  +L  +R 
Sbjct:  125 PEKYVPKYGAFCSWGISAESFWTPSTLGPPVDPNVWQIYAGELLLFYRE 173          
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: A0A7S3JR48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR48_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.310e-11
Identity = 26/48 (54.17%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    7 HPEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVF 150
            +P+KY+P +G FCS+GI+NE +WTKD+LGP+A+ N W+I  D   H+F
Sbjct:  195 NPDKYVPKFGGFCSYGITNEFFWTKDTLGPNANKNVWIIYDD---HLF 239          
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: D7FW15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW15_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.840e-11
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 QEHPEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVFR 153
            +  PE+Y+PAWG FC +GIS+E  W  D LGP ++P+ WLI  D  L++FR
Sbjct:  159 ESDPERYLPAWGGFCGFGISHEVVWGPDVLGPPSNPDFWLIEDDR-LYLFR 208          
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: A0A7S3UVA0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA0_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 4.100e-10
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 QEHPEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVFR 153
            +  PEKY+PAWG FC++G++ E WWT +++     P++W I  DG L  F 
Sbjct:   62 ESDPEKYVPAWGGFCAYGVAEETWWTAETMSAGVVPDAWRII-DGRLFFFH 111          
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: F0Y5C1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5C1_AURAN)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-9
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   10 PEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVF 150
            P +Y P +G FCS+GIS+E +WTK +LGP ++PN W I  DG L VF
Sbjct:   77 PARYAPKFGGFCSYGISDETFWTKSTLGPFSNPNVWRIV-DGRLLVF 122          
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Match: A0A7S3UXT1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXT1_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 3.450e-7
Identity = 20/51 (39.22%), Postives = 29/51 (56.86%), Query Frame = 1
Query:    1 QEHPEKYMPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVFR 153
            +  PE Y+PAWG FCS+G+S E WWT +++      +      DG L +F 
Sbjct:  140 ESSPETYVPAWGGFCSYGVSQESWWTAETMRAGVYASGAWRVVDGRLFLFH 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63753.14175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G8M9_ECTSI6.370e-2268.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G5N6_ECTSI3.190e-1864.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CFY1_9STRA1.940e-1359.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5JXZ9_9PHAE4.480e-1356.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1WB01_HETAK4.810e-1355.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3JR48_9STRA2.310e-1154.17Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
D7FW15_ECTSI8.840e-1150.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UVA0_HETAK4.100e-1043.14Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
F0Y5C1_AURAN1.820e-955.32Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3UXT1_HETAK3.450e-739.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63753contigH-paniculata_contig63753:452..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue9.2e-15
Seed eggNOG ortholog2880.D7G8M9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2D48G@1,2SU9E@2759
Ec32 ortholog descriptionYHS domain
Ec32 orthologEc-12_008530.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size138
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930736.8233864-UTR-H-paniculata_contig63753:451..4721622930736.8233864-UTR-H-paniculata_contig63753:451..472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig63753 452..472 +
1691481429.4399812-UTR-H-paniculata_contig63753:451..4721691481429.4399812-UTR-H-paniculata_contig63753:451..472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig63753 452..472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930736.843166-CDS-H-paniculata_contig63753:472..6101622930736.843166-CDS-H-paniculata_contig63753:472..610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63753 473..610 +
1691481429.4529417-CDS-H-paniculata_contig63753:472..6101691481429.4529417-CDS-H-paniculata_contig63753:472..610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63753 473..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63753.14175.1prot_H-paniculata_contig63753.14175.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63753 473..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63753.14175.1

>prot_H-paniculata_contig63753.14175.1 ID=prot_H-paniculata_contig63753.14175.1|Name=mRNA_H-paniculata_contig63753.14175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MPAWGAFCSWGISNEDWWTKDSLGPDADPNSWLITSDGVLHVFRR*
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mRNA from alignment at H-paniculata_contig63753:452..610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63753.14175.1 ID=mRNA_H-paniculata_contig63753.14175.1|Name=mRNA_H-paniculata_contig63753.14175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig63753:452..610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACACCCAGAGAAGTATATGCCCGCCTGGGGAGCGTTTTGCAGCTG GGGAATCTCCAATGAAGATTGGTGGACCAAGGATTCGTTAGGACCGGATG CTGACCCAAACAGTTGGCTCATCACTTCAGACGGCGTGCTCCATGTTTTC CGCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig63753:452..610+

>mRNA_H-paniculata_contig63753.14175.1 ID=mRNA_H-paniculata_contig63753.14175.1|Name=mRNA_H-paniculata_contig63753.14175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig63753:452..610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGCCTGGGGAGCGTTTTGCAGCTGGGGAATCTCCAATGAAGATTG
GTGGACCAAGGATTCGTTAGGACCGGATGCTGACCCAAACAGTTGGCTCA
TCACTTCAGACGGCGTGCTCCATGTTTTCCGCAGGTAAATGCCCGCCTGG
GGAGCGTTTTGCAGCTGGGGAATCTCCAATGAAGATTGGTGGACCAAGGA
TTCGTTAGGACCGGATGCTGACCCAAACAGTTGGCTCATCACTTCAGACG
GCGTGCTCCATGTTTTCCGCAGGTAA
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