mRNA_H-paniculata_contig6371.14172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6371.14172.1
Unique NamemRNA_H-paniculata_contig6371.14172.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: A0A6H5JGY0_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGY0_9PHAE)

HSP 1 Score: 915 bits (2364), Expect = 0.000e+0
Identity = 521/612 (85.13%), Postives = 556/612 (90.85%), Query Frame = 1
Query:    1 MESSTNVKSLKLKAGALALLMASSEAFMVSSKIRATTSKASVNGFARRSALVSSRP-LSLRAPVAPMMAMESEGFNPVHSVAALLAAATIAFSSSALAVDVA--VSPFAEVASQAPPAMMKSQSVQTVEDIRYSDFVSAVEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQLGSLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKNARVNDEMRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            M+SSTN++S+KLKAG LA+LMASSEAFMVSS IR  TS  +   F R S+ +S+R  +     VAP MAM+ EGFN   S+AA+LAAATIAFSS A+AVDV    SPFA    QAPPAMM+ +SVQTVE+IRYSDFV+AVEKDEIEKVSFSYDGKKL+AVDTDG+RVK+DSIPNDPELLTILTKHKVDVTVMPNQ NQGGGG  GQLG LIFPAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NPM+ TKSKGKLEVNPDTGV FDQVAGCDSAKFELEEVVDFLKNP KYTK+GA+IPRGVILEGPPGTGKTL+ARAVAGEAG PFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRG GMAGGNDEREQTLNQMLVEMDGF GNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNF GR AILKVHARGKPLAPDVDIEGIARRTPGFSGAQL+NLLNEAAIFAARK+RPVPSIEWEDVD AVDRLLVGLEKK ARV+++MR +VAYHE+GHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSK YMESQLAVALGGRLAEE+++GEDQV
Sbjct:    1 MDSSTNMRSMKLKAGVLAMLMASSEAFMVSSNIRVGTSAPTAGAFTRSSSALSARTAVRPMQSVAPAMAMKGEGFNAPASLAAMLAAATIAFSSPAMAVDVPPPASPFANAGGQAPPAMMQ-RSVQTVENIRYSDFVNAVEKDEIEKVSFSYDGKKLVAVDTDGVRVKLDSIPNDPELLTILTKHKVDVTVMPNQTNQGGGGGLGQLGGLIFPALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----NPMDMTKSKGKLEVNPDTGVMFDQVAGCDSAKFELEEVVDFLKNPAKYTKVGAKIPRGVILEGPPGTGKTLIARAVAGEAGVPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGSGMAGGNDEREQTLNQMLVEMDGFVGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFQGRVAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLKNLLNEAAIFAARKQRPVPSIEWEDVDGAVDRLLVGLEKKGARVDEQMRTIVAYHEAGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKVYMESQLAVALGGRLAEEVMFGEDQV 606          
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: A0A835YMI8_9STRA (FtsH protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMI8_9STRA)

HSP 1 Score: 701 bits (1809), Expect = 1.200e-244
Identity = 390/601 (64.89%), Postives = 461/601 (76.71%), Query Frame = 1
Query:   37 KAGALALLMASSEAFMVSSKIRATTSKASVNGFARRSALVSSRPLSLRAPVAPMMAMESEGFNP-VHSVAALLAAATIAFSSSALAVDVAVSPFAEVASQAPPAMMKSQSVQTVEDIRYSDFVSAVEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQ---LGSLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKNARVNDEMRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            KA AL  L  SSEAF VSS IR T S  + +  + RS    + P  +         M S   NP V ++AA+L+ A +  S++A ++    S   ++ +       +S SV  V +IRYSDF+  VE+D IEKVSFS DG++L+A+DTDG RVKMD++PNDPELLTILTKHKVDVTV+P                LGSL+FPA+                 XXXXXXXX          NPMEF KS+ K+++ PDTGV F  VAGCDSAK ELEEVVDFLKNP KYT++GA+IPRGVILEGPPGTGKTLLARAVAGEAG PFIA SGSEFVEMFVGVGA+RVRDLF KAKEN+PCIIFIDEIDAVGRQRG G+AGGNDEREQTLNQ+L EMDGF GNPG+IV+AATNR DILD ALLRPGRFDRRV VDLP+F+GR A+LKVHARGKPL+PDVD+  +ARRTPGFSGAQLQNLLNEAAIFAARK++ +  I+W+D+D A+DRLLVGLEKKNA+ ++ M+++VAYHE+GHAIVGALMPDYD VQKVTI+PR+NGAGGLTFF+PSE RLE GLYS+ Y+E+QLAVALGGRLAEE+IYG+D V
Sbjct:   10 KALALTWLAVSSEAFTVSSNIRGTNSWTTGSKTSSRSMAQVAHPQRVTDVTMASRPMFS---NPAVKTLAAMLSTAAVILSTAAPSIAAEASVLDQIPAAPSALQSRSASVSQVNEIRYSDFIKEVEEDRIEKVSFSSDGQRLLAIDTDGNRVKMDALPNDPELLTILTKHKVDVTVIPAAXXXXXXXXXXXXXLLGSLLFPAILFGGLFLLTRRGGEGGEXXXXXXXXMG--------NPMEFAKSQSKVQLQPDTGVNFADVAGCDSAKLELEEVVDFLKNPAKYTELGAKIPRGVILEGPPGTGKTLLARAVAGEAGVPFIAVSGSEFVEMFVGVGASRVRDLFTKAKENAPCIIFIDEIDAVGRQRGAGIAGGNDEREQTLNQILTEMDGFEGNPGIIVIAATNRADILDSALLRPGRFDRRVNVDLPDFSGRMAVLKVHARGKPLSPDVDLSSVARRTPGFSGAQLQNLLNEAAIFAARKEKTI--IDWDDIDGAIDRLLVGLEKKNAQTSERMKEIVAYHEAGHAIVGALMPDYDMVQKVTIIPRSNGAGGLTFFAPSEARLESGLYSRQYLEAQLAVALGGRLAEEIIYGDDGV 597          
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: A0A835YNY9_9STRA (Metalloprotease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY9_9STRA)

HSP 1 Score: 643 bits (1659), Expect = 1.020e-223
Identity = 346/474 (73.00%), Postives = 396/474 (83.54%), Query Frame = 1
Query:  409 VEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQLGSLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKNARVNDE-MRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            VEKD IEKV+FS DG++L+AVDTDG R+++D++PNDPELLTILTKHKVDVTVMP  A++  G   G + SL FP +                    XX  XXXXXXXXX  NPM+F KS+ K+++ PDTG  F  VAGCD AK ELEEVVDFLKNP KYT++GA IPRGVILEGPPGTGKTLLARAVAGEAG PFIA SGSEFVEMFVGVGA+RVRDLF +AK+N+PCIIFIDEIDAVGRQRG G+AGGNDEREQTLNQ+L EMDGF GN G+IV+AATNR DILD+ALLRPGRFDRRV VDLPNFTGR AILKVHARGKPL+ DVD+E IARRTPG+SGAQLQNL+NEAAIFAARK + +  IEWED+DSA+DRL+VGLEKK      + M+++VAYHESGHAI GALMPDYD VQKVTI+PR+NGAGGLTFF+PSE RLE GLYS+ Y+E+QLAVALGGR+AEELIYGE+ V
Sbjct:    2 VEKDNIEKVTFSADGQRLVAVDTDGSRLRLDALPNDPELLTILTKHKVDVTVMP-AADKTQGMMSGVVSSLAFPLILFLGLLFLTRRSGDEEGGGGXXDMXXXXXXXXX--NPMDFGKSQSKIQMQPDTGTKFTDVAGCDQAKLELEEVVDFLKNPTKYTELGATIPRGVILEGPPGTGKTLLARAVAGEAGVPFIAISGSEFVEMFVGVGASRVRDLFGQAKKNAPCIIFIDEIDAVGRQRGAGIAGGNDEREQTLNQILTEMDGFEGNNGIIVIAATNRADILDNALLRPGRFDRRVNVDLPNFTGRIAILKVHARGKPLSSDVDLESIARRTPGYSGAQLQNLMNEAAIFAARKDKTI--IEWEDIDSALDRLMVGLEKKGGWGEAKRMKEIVAYHESGHAIAGALMPDYDMVQKVTIIPRSNGAGGLTFFAPSESRLESGLYSRQYLEAQLAVALGGRVAEELIYGENGV 470          
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: A0A4D9D8S0_9STRA (AAA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8S0_9STRA)

HSP 1 Score: 632 bits (1629), Expect = 9.340e-217
Identity = 335/508 (65.94%), Postives = 407/508 (80.12%), Query Frame = 1
Query:  310 PFAEVASQAPPAMMKSQSVQTVED--IRYSDFVSAVEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQLGSLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKNARVNDEMRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            P A  A+ APPA+ +S + Q      +RYSDF+  VEK +IEKV+FS DG+KL+A DTDG R ++D++PNDP+LL  LT+  VDVTV+P Q  +  G NF Q  S++FP L                 XXXXXXXXXX         PMEF+KS  K+ + PDTGVTFD VAGCD AK EL EVVDFLKNP KYT +GA+IPRGVIL+GPPGTGKTLLA+AVAGE+G PFI+ +GSEFVEMFVGVGA+RVRD+F++AK+N+PCIIFIDEIDAVGRQRG G AGGNDEREQTLNQ+L EMDGF GNPG+IV+AATNR D+LD ALLRPGRFDRRV VDLP+F GRTAILKVH++GKPLAPDVD+E I+RRTPGFSGA LQN++NEAAI AAR  +    + WE++D+AVDR+LVGLEK+ A V    +++VA+HE+GHAIVGA++PDYD VQKVTI+PR+NGAGGLTFF+P+E+RLE  +Y++ Y+E+QLAVALGGRLAEELI+G DQV
Sbjct:   94 PQAAQAADAPPALQQSMNRQAGVPSLVRYSDFLDMVEKGQIEKVTFSADGQKLVATDTDGQRYRLDALPNDPDLLATLTQKMVDVTVLPEQP-KADGFNFFQ--SILFPGLLFLGLFFLARRGGSGAGXXXXXXXXXXMGGQ----GPMEFSKSSAKIMLTPDTGVTFDNVAGCDGAKMELTEVVDFLKNPEKYTDVGAKIPRGVILDGPPGTGKTLLAKAVAGESGVPFISAAGSEFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRQRGAGFAGGNDEREQTLNQLLTEMDGFEGNPGIIVIAATNRADVLDQALLRPGRFDRRVTVDLPDFKGRTAILKVHSKGKPLAPDVDLESISRRTPGFSGASLQNIMNEAAISAARADKSY--VGWEEIDNAVDRVLVGLEKRGADVPALRKELVAFHEAGHAIVGAVIPDYDMVQKVTIIPRSNGAGGLTFFAPNEDRLESSMYTRQYLEAQLAVALGGRLAEELIFGADQV 592          
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: B7FPI1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPI1_PHATC)

HSP 1 Score: 626 bits (1614), Expect = 4.080e-216
Identity = 321/484 (66.32%), Postives = 377/484 (77.89%), Query Frame = 1
Query:  379 DIRYSDFVSAVEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQLG-SLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKNARVNDEMRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            D+RYSDF+  V  D +EKV+FS DG +L+ VD DG RVK++++PNDP+LLT LT HKVDVTV+P Q   G     G+L  SLIFPA                                    NPM F KSK ++++ PDTGVTFD VAGCD AK EL EVVDFLK P  YTK G +IPRGVIL+GPPGTGKTLLA+AVAGEAG PFI+ SGSEFVEMFVGVGA+RVRD+F +AK+N+PCIIFIDEIDAVGRQRG G AGGNDEREQT+NQ+LVEMDGF GNPGVI +AATNR+DILD ALLRPGRFDR+V VDLP+F GRT IL VH+RGKPL PDVD+E I+RRTPGFSGAQL+NL+NEAAI AAR ++   +I WE +D AVDR++VGLEKK      + +++VAYHE+GHAIVGAL+PDYD VQK+TI+PR+NGAGGLTFF+P E RLE G+YSK Y+ESQLAVALGGRLAEE+IYGED V
Sbjct:   66 DVRYSDFLRLVNADRVEKVTFSADGTQLLGVDVDGARVKIEALPNDPDLLTSLTTHKVDVTVLPAQEASG----LGELAQSLIFPAALFAGLFFLSRRAGGGMGGGMGGPG-----------NPMGFGKSKAQVQMVPDTGVTFDDVAGCDGAKLELAEVVDFLKQPEAYTKNGCKIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFSQAKKNAPCIIFIDEIDAVGRQRGAGFAGGNDEREQTVNQILVEMDGFDGNPGVITIAATNRVDILDSALLRPGRFDRKVTVDLPDFKGRTRILGVHSRGKPLEPDVDLEAISRRTPGFSGAQLENLMNEAAISAARAEKS--TIGWEQIDGAVDRIMVGLEKKGGNPQLKQKELVAYHEAGHAIVGALVPDYDQVQKITIIPRSNGAGGLTFFAPQESRLESGMYSKQYLESQLAVALGGRLAEEIIYGEDMV 532          
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: A0A1Z5JQE6_FISSO (Cell division protease FtsH n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQE6_FISSO)

HSP 1 Score: 625 bits (1613), Expect = 4.560e-216
Identity = 323/484 (66.74%), Postives = 381/484 (78.72%), Query Frame = 1
Query:  379 DIRYSDFVSAVEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQLG-SLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKNARVNDEMRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            D+RYSDF+  V  D IEKV+FS DG +L+ VD DG+R+K++S+PNDP+LLT LT HKVDVTV+P Q   G     G+L  SLIFPA+                 XXX               NPM F KSK ++++ PDTGVTFD VAGCD AK EL EVVDFLK P  YTK G RIPRGVIL+GPPGTGKTLLA+AVAGEAG PFI+ SGSEFVEMFVGVGA+RVRD+F +A++N+PCIIFIDEIDAVGRQRG G AGGNDEREQT+NQ+LVEMDGF GNPG+I +AATNR+DILD ALLRPGRFDR+V VDLP+F GRT IL VH+RGKPL PDVD+E I+RRTPGFSGAQL+NL+NEAAI AAR  +   +I WE +D AVDR++VGLEKK      + +++VAYHE+GHAIVGAL+PDYD VQK++I+PR+NGAGGLTFF+P E RLE G+YS+ Y+ESQLAVALGGRLAEELIYGED V
Sbjct:   61 DVRYSDFLRLVNGDRIEKVTFSSDGTQLLGVDVDGVRLKIESLPNDPDLLTQLTAHKVDVTVLPTQEASG----LGELAQSLIFPAILFAGLFFLSRRSGGVGGXXXPG-------------NPMGFGKSKAQIQMVPDTGVTFDDVAGCDGAKLELAEVVDFLKQPEAYTKNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFSQARKNAPCIIFIDEIDAVGRQRGAGYAGGNDEREQTVNQILVEMDGFDGNPGIITIAATNRVDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHSRGKPLEPDVDLEAISRRTPGFSGAQLENLMNEAAIAAARANKS--TIGWEQIDGAVDRIMVGLEKKGGNPQLKQKELVAYHEAGHAIVGALVPDYDQVQKISIIPRSNGAGGLTFFAPQESRLESGMYSRQYLESQLAVALGGRLAEELIYGEDMV 525          
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: A0A7S3PD78_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD78_9STRA)

HSP 1 Score: 624 bits (1608), Expect = 3.300e-215
Identity = 320/482 (66.39%), Postives = 377/482 (78.22%), Query Frame = 1
Query:  382 IRYSDFVSAVEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQLGSLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKNARVNDEMRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            +RYSDF+  V  D IEKV+FS DG +L+ VD +G+R+ ++++PNDP+LLT LT HKVDVTV+P Q   GG G   Q  SLIFP                                     NPM F KSK ++++ PDTGVTFD VAGCD AK EL EVVDFLK P  YTK G RIPRGVIL+GPPGTGKTLLA+AVAGEAG PFI+ SGSEFVEMFVGVGA+RVRD+F +AK+N+PCIIFIDEIDAVGRQRG G AGGNDEREQT+NQ+LVEMDGF GNPG+I +AATNRIDILD ALLRPGRFDR+V VDLP+F GRT IL VH+RGKPL PDVD+E I+RRTPGFSGAQL+NL+NEAAI AARK +   +I WE++DSAVDR++VGLEKK      + +++VAYHE+GHAIVGAL+PDYD VQK+TI+PR+NGAGGLTFF+P E RLE G+YS+ Y+ESQLAVALGGRLAEE+IYGED V
Sbjct:   69 VRYSDFLKLVNADRIEKVTFSADGTQLLGVDAEGVRIAIEALPNDPDLLTQLTNHKVDVTVLPTQ-EAGGLGELAQ--SLIFPLALFAGLFFLSRRAGGGNPMGGPG-------------NPMGFGKSKAQIQMVPDTGVTFDDVAGCDGAKLELAEVVDFLKQPEAYTKNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDVFAQAKKNAPCIIFIDEIDAVGRQRGAGYAGGNDEREQTVNQILVEMDGFDGNPGIITIAATNRIDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHSRGKPLEPDVDLEAISRRTPGFSGAQLENLMNEAAITAARKAKS--TIGWEEIDSAVDRIMVGLEKKGGNPQLKQKELVAYHEAGHAIVGALVPDYDQVQKITIIPRSNGAGGLTFFAPQESRLESGMYSRQYLESQLAVALGGRLAEEIIYGEDMV 532          
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: A0A1E7FTT2_9STRA (Cell division protease ftsH 4 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTT2_9STRA)

HSP 1 Score: 620 bits (1599), Expect = 2.240e-214
Identity = 330/502 (65.74%), Postives = 393/502 (78.29%), Query Frame = 1
Query:  322 VASQAPPAMMKSQSVQTVEDIRYSDFVSAVEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQLGSLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKNARVNDEMRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            VA  + P + KS    T  D+RYSDF+  V+ ++IEKV+FS DG +L+ VD DG R+K++S+PNDPELLT LT HKVDVTV+P Q   GG G   Q  SL+FPA                   XXXXXXX            M F KSK ++++ PDTGVTFD VAGCD AK EL EVVDFLKNP  YTK G +IPRGVIL+GPPGTGKTLLA+AVAGE+G PFI+ SGSEFVEMFVGVGA+RVRD+F +AK+N+PCIIFIDEIDAV RQRG G AGGNDEREQT+NQ+LVEMDGF GNPGVI +AATNRIDILD ALLRPGRFDR+V VDLP+F GRT IL VH+RGKPL PDVD+E IARRTPG+SGAQL+NL+NEAAI AAR ++   ++ WE +D AVDRL+VGLEKK    + + + M+AYHE+GHA+VGAL+PDYD VQK++I+PR+NGAGGLTFF+P E RLE G+YSK Y+ESQLAVALGGRLAEE++YGED+V
Sbjct:   13 VAESSTPVITKSTYGPT--DVRYSDFLKLVDGNKIEKVTFSADGTQLLGVDVDGTRLKIESLPNDPELLTQLTGHKVDVTVLPQQ-EAGGLGELAQ--SLLFPAALFAGLFFLSRRAGGEGGPXXXXXXX----------GQMNFGKSKAEVQMVPDTGVTFDDVAGCDGAKLELAEVVDFLKNPEAYTKNGCQIPRGVILDGPPGTGKTLLAKAVAGESGVPFISISGSEFVEMFVGVGASRVRDIFGQAKKNAPCIIFIDEIDAVARQRGSGFAGGNDEREQTVNQILVEMDGFEGNPGVITIAATNRIDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHSRGKPLEPDVDLEAIARRTPGYSGAQLENLMNEAAISAARAEKS--TVGWEQIDGAVDRLMVGLEKKGGNQDPKSKLMIAYHEAGHAVVGALVPDYDQVQKISIMPRSNGAGGLTFFAPQESRLESGMYSKQYLESQLAVALGGRLAEEIMYGEDKV 497          
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: A0A7S2E7W5_TRICV (Hypothetical protein n=3 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E7W5_TRICV)

HSP 1 Score: 622 bits (1603), Expect = 3.230e-214
Identity = 319/485 (65.77%), Postives = 378/485 (77.94%), Query Frame = 1
Query:  379 DIRYSDFVSAVEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQLGSLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKN--ARVNDEMRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            D+RYSDF+  V  D IEKV+FS DG +L+ VDTDG+RVK+ ++PNDP+LLT LT HKVDVTV+P    +GG G   Q  SLI PA+                      X            NPM F KSK ++++ PDTGVTF+ VAGCD AK EL EVVDFLK P  Y+  G RIPRGVIL+GPPGTGKTLLA+AVAGEAG PFI+ SGSEFVEMFVGVGA+RVRD+F +AK+N+PCIIFIDEIDAVGRQRG G AGGNDEREQT+NQ+LVEMDGF GNPG+I +AATNR+D+LD+ALLRPGRFDR++ VDLP+F GR  IL VHARGKPL PDVD+E IARRTPGFSGAQL+NL+NEAAI AAR  +   ++ WE +D AVDR++VGLEKK   A +  +  ++VAYHE+GHAIVGAL+PDYD VQK++I+PR+NGAGGLTFF+P E RLE GLYSK Y+ESQLAVALGGRLAEE+IYGED V
Sbjct:   77 DVRYSDFLKLVNADRIEKVTFSSDGTQLLGVDTDGVRVKIGALPNDPDLLTQLTNHKVDVTVLPANQGEGGLGELAQ--SLILPAVLFAGLFFLSRQGGAGSGMGGGMXGPG---------NPMGFGKSKAQIQMIPDTGVTFEDVAGCDGAKLELAEVVDFLKQPEVYSANGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFSQAKKNAPCIIFIDEIDAVGRQRGAGFAGGNDEREQTINQILVEMDGFDGNPGIITIAATNRVDVLDNALLRPGRFDRKITVDLPDFKGRERILGVHARGKPLEPDVDLEAIARRTPGFSGAQLENLMNEAAISAARAGKS--TVGWEQIDGAVDRIMVGLEKKGGTATIAAQQNELVAYHEAGHAIVGALIPDYDQVQKISIIPRSNGAGGLTFFAPQESRLESGLYSKQYLESQLAVALGGRLAEEVIYGEDMV 548          
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Match: B8BVM2_THAPS (Metalloprotease (Fragment) n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BVM2_THAPS)

HSP 1 Score: 613 bits (1582), Expect = 1.220e-212
Identity = 322/483 (66.67%), Postives = 381/483 (78.88%), Query Frame = 1
Query:  385 RYSDFVSAVEKDEIEKVSFSYDGKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGNFGQLGSLIFPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPMEFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGARIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAARVRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEMDGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILKVHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSIEWEDVDSAVDRLLVGLEKKN--ARVNDEMRKMVAYHESGHAIVGALMPDYDTVQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAEELIYGEDQV 1827
            RYSDF+  V  D+IEKV+FS DG +L+ VDTDG R+K++++PNDP+LLT LT HKVDVTV+P+    GG G+  Q  SLI PA                    XXXXXX          NPM   KSK ++++ PDTGV F+ VAGCD AK EL EVVDFLK P  Y+K G RIPRGVIL+GPPGTGKTLLA+AVAGEAG PFI+ SGSEFVEMFVGVGA+RVRD+F +AK+N+PCIIFIDEIDAVGRQRG G AGGNDEREQT+NQ+LVEMDGF GNPG+I +AATNR+DILD ALLRPGRFDR++ VDLP+F GRT IL VHARGKPL PDVD+E I RRTPGFSGAQL+NL+NEAAI AAR  +   +I WE +D AVDR++VGLEKK   A ++ +  ++VAYHE+GHAI GAL+PDYD VQK++I+PR+NGAGGLTFF+P E+RLE G+YSK Y+ESQLAVALGGRLAEELIYGED V
Sbjct:    1 RYSDFLKLVNGDKIEKVTFSADGTQLLGVDTDGTRIKLEALPNDPDLLTQLTSHKVDVTVLPSNEAAGGLGDLAQ--SLILPAALFAGLFFLSRRAGGGAGMGXXXXXX----------NPMGMGKSKAQIQMIPDTGVNFEDVAGCDGAKLELAEVVDFLKQPEVYSKNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDVFSQAKKNAPCIIFIDEIDAVGRQRGAGFAGGNDEREQTINQILVEMDGFDGNPGIITIAATNRVDILDQALLRPGRFDRKITVDLPDFKGRTRILGVHARGKPLEPDVDLEAIGRRTPGFSGAQLENLMNEAAISAARIGKS--TIGWEQIDGAVDRIMVGLEKKGGTAMLSAKQNELVAYHEAGHAICGALIPDYDQVQKISIIPRSNGAGGLTFFAPQEQRLESGMYSKQYLESQLAVALGGRLAEELIYGEDFV 469          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6371.14172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY0_9PHAE0.000e+085.13AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YMI8_9STRA1.200e-24464.89FtsH protease n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A835YNY9_9STRA1.020e-22373.00Metalloprotease n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A4D9D8S0_9STRA9.340e-21765.94AAA domain-containing protein n=2 Tax=Monodopsidac... [more]
B7FPI1_PHATC4.080e-21666.32Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JQE6_FISSO4.560e-21666.74Cell division protease FtsH n=2 Tax=Fistulifera so... [more]
A0A7S3PD78_9STRA3.300e-21566.39Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7FTT2_9STRA2.240e-21465.74Cell division protease ftsH 4 n=1 Tax=Fragilariops... [more]
A0A7S2E7W5_TRICV3.230e-21465.77Hypothetical protein n=3 Tax=Trieres chinensis Tax... [more]
B8BVM2_THAPS1.220e-21266.67Metalloprotease (Fragment) n=2 Tax=Thalassiosirale... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6371contigH-paniculata_contig6371:8524..10350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score921.0
Seed ortholog evalue2.9e-265
Seed eggNOG ortholog2880.D8LBE1
Preferred nameFTSH1
KEGG koko:K03798
KEGG ModuleM00742
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009892,GO:0009941,GO:0009987,GO:0010033,GO:0010109,GO:0010205,GO:0010206,GO:0010304,GO:0015979,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0019684,GO:0022607,GO:0030091,GO:0030163,GO:0031323,GO:0031324,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0034622,GO:0042221,GO:0042548,GO:0042623,GO:0042651,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048564,GO:0050789,GO:0050794,GO:0050896,GO:0055035,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905156
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
Ec32 ortholog descriptionFtsH protease
Ec32 orthologEc-27_004290.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Exons1
Model size1827
Cds size1827
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930736.558604-CDS-H-paniculata_contig6371:8523..103501622930736.558604-CDS-H-paniculata_contig6371:8523..10350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6371 8524..10350 +
1691481429.3239195-CDS-H-paniculata_contig6371:8523..103501691481429.3239195-CDS-H-paniculata_contig6371:8523..10350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6371 8524..10350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6371.14172.1prot_H-paniculata_contig6371.14172.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6371 8524..10350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6371.14172.1

>prot_H-paniculata_contig6371.14172.1 ID=prot_H-paniculata_contig6371.14172.1|Name=mRNA_H-paniculata_contig6371.14172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=609bp
MESSTNVKSLKLKAGALALLMASSEAFMVSSKIRATTSKASVNGFARRSA
LVSSRPLSLRAPVAPMMAMESEGFNPVHSVAALLAAATIAFSSSALAVDV
AVSPFAEVASQAPPAMMKSQSVQTVEDIRYSDFVSAVEKDEIEKVSFSYD
GKKLIAVDTDGMRVKMDSIPNDPELLTILTKHKVDVTVMPNQANQGGGGN
FGQLGSLIFPALLFGSLLFLSRRGGGQNQGGGPPGGGMGGGGMPGGGNPM
EFTKSKGKLEVNPDTGVTFDQVAGCDSAKFELEEVVDFLKNPGKYTKIGA
RIPRGVILEGPPGTGKTLLARAVAGEAGCPFIATSGSEFVEMFVGVGAAR
VRDLFDKAKENSPCIIFIDEIDAVGRQRGGGMAGGNDEREQTLNQMLVEM
DGFSGNPGVIVMAATNRIDILDDALLRPGRFDRRVLVDLPNFTGRTAILK
VHARGKPLAPDVDIEGIARRTPGFSGAQLQNLLNEAAIFAARKKRPVPSI
EWEDVDSAVDRLLVGLEKKNARVNDEMRKMVAYHESGHAIVGALMPDYDT
VQKVTIVPRTNGAGGLTFFSPSEERLECGLYSKGYMESQLAVALGGRLAE
ELIYGEDQV
back to top

mRNA from alignment at H-paniculata_contig6371:8524..10350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6371.14172.1 ID=mRNA_H-paniculata_contig6371.14172.1|Name=mRNA_H-paniculata_contig6371.14172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1827bp|location=Sequence derived from alignment at H-paniculata_contig6371:8524..10350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCGTCCACGAATGTAAAGAGTCTTAAACTCAAAGCTGGGGCGCT GGCCTTATTGATGGCATCAAGCGAGGCCTTCATGGTTTCATCGAAAATCC GAGCGACGACGAGCAAGGCGTCTGTCAATGGGTTCGCCAGGCGATCTGCC CTCGTATCTTCTCGGCCCCTTTCGTTGCGTGCTCCTGTAGCACCCATGAT GGCCATGGAATCTGAAGGCTTCAACCCCGTCCATTCTGTAGCCGCGCTCC TCGCCGCAGCAACAATTGCGTTTTCTTCCTCTGCGCTGGCGGTAGATGTC GCCGTGTCACCGTTTGCGGAGGTAGCATCACAGGCGCCGCCAGCTATGAT GAAAAGCCAGTCTGTACAGACGGTGGAGGACATTCGCTACTCGGACTTCG TGAGCGCGGTCGAGAAGGACGAGATCGAGAAGGTTTCCTTTTCGTATGAT GGCAAGAAGTTGATCGCCGTCGACACTGATGGCATGCGTGTGAAGATGGA CTCCATCCCGAACGACCCAGAACTTCTCACTATTCTCACCAAGCACAAGG TGGATGTTACCGTCATGCCCAACCAGGCCAACCAGGGCGGCGGCGGCAAC TTCGGGCAGCTGGGTTCGCTCATCTTCCCTGCCCTCTTGTTCGGAAGCTT GCTCTTCCTCTCTCGGAGGGGCGGTGGTCAAAACCAGGGTGGAGGCCCTC CGGGAGGAGGCATGGGCGGTGGCGGGATGCCGGGTGGGGGCAACCCCATG GAATTCACCAAGTCAAAGGGGAAGTTGGAGGTGAACCCTGACACGGGTGT CACCTTCGATCAGGTTGCAGGCTGCGACTCGGCCAAGTTCGAGTTGGAGG AGGTGGTGGACTTCCTCAAGAACCCTGGCAAGTACACGAAGATTGGCGCT AGGATCCCGCGAGGTGTGATTCTCGAGGGGCCGCCGGGTACAGGTAAGAC GCTTCTGGCCCGGGCTGTAGCAGGCGAGGCCGGCTGTCCTTTTATCGCCA CTTCCGGATCTGAGTTTGTCGAGATGTTTGTGGGTGTGGGTGCGGCCCGT GTGCGCGACTTGTTCGACAAGGCGAAAGAGAACTCCCCGTGTATCATCTT CATCGATGAGATCGACGCCGTAGGGCGGCAGCGAGGCGGCGGCATGGCCG GCGGCAACGACGAGCGAGAGCAGACACTGAACCAGATGCTGGTGGAGATG GACGGCTTCAGCGGAAACCCGGGCGTCATCGTCATGGCCGCGACGAACCG TATCGACATCCTCGACGATGCTCTGCTCCGCCCAGGGCGGTTCGACCGCA GGGTGCTGGTCGACCTTCCCAACTTCACAGGCAGAACTGCTATTCTTAAG GTGCACGCGCGTGGCAAGCCCCTTGCACCGGATGTAGACATCGAGGGAAT TGCCCGTCGTACCCCCGGTTTCTCTGGCGCCCAGCTCCAAAACCTGCTCA ATGAGGCGGCGATATTTGCTGCGCGTAAGAAGCGCCCCGTGCCTAGCATC GAGTGGGAAGATGTCGACTCTGCGGTGGACCGTCTGCTTGTCGGCCTTGA GAAGAAGAACGCCCGCGTGAACGACGAGATGCGCAAAATGGTGGCCTACC ACGAGTCCGGCCACGCGATTGTGGGTGCGCTCATGCCTGACTATGACACA GTGCAAAAGGTGACGATCGTGCCGAGGACCAACGGCGCCGGCGGTTTGAC CTTCTTCTCTCCTTCGGAGGAGCGGCTCGAGTGCGGGCTGTACTCGAAGG GCTACATGGAGTCGCAGTTGGCCGTAGCATTGGGTGGGCGTCTGGCTGAG GAGCTCATCTATGGAGAGGACCAGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6371:8524..10350+

>mRNA_H-paniculata_contig6371.14172.1 ID=mRNA_H-paniculata_contig6371.14172.1|Name=mRNA_H-paniculata_contig6371.14172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3654bp|location=Sequence derived from alignment at H-paniculata_contig6371:8524..10350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCGTCCACGAATGTAAAGAGTCTTAAACTCAAAGCTGGGGCGCT
GGCCTTATTGATGGCATCAAGCGAGGCCTTCATGGTTTCATCGAAAATCC
GAGCGACGACGAGCAAGGCGTCTGTCAATGGGTTCGCCAGGCGATCTGCC
CTCGTATCTTCTCGGCCCCTTTCGTTGCGTGCTCCTGTAGCACCCATGAT
GGCCATGGAATCTGAAGGCTTCAACCCCGTCCATTCTGTAGCCGCGCTCC
TCGCCGCAGCAACAATTGCGTTTTCTTCCTCTGCGCTGGCGGTAGATGTC
GCCGTGTCACCGTTTGCGGAGGTAGCATCACAGGCGCCGCCAGCTATGAT
GAAAAGCCAGTCTGTACAGACGGTGGAGGACATTCGCTACTCGGACTTCG
TGAGCGCGGTCGAGAAGGACGAGATCGAGAAGGTTTCCTTTTCGTATGAT
GGCAAGAAGTTGATCGCCGTCGACACTGATGGCATGCGTGTGAAGATGGA
CTCCATCCCGAACGACCCAGAACTTCTCACTATTCTCACCAAGCACAAGG
TGGATGTTACCGTCATGCCCAACCAGGCCAACCAGGGCGGCGGCGGCAAC
TTCGGGCAGCTGGGTTCGCTCATCTTCCCTGCCCTCTTGTTCGGAAGCTT
GCTCTTCCTCTCTCGGAGGGGCGGTGGTCAAAACCAGGGTGGAGGCCCTC
CGGGAGGAGGCATGGGCGGTGGCGGGATGCCGGGTGGGGGCAACCCCATG
GAATTCACCAAGTCAAAGGGGAAGTTGGAGGTGAACCCTGACACGGGTGT
CACCTTCGATCAGGTTGCAGGCTGCGACTCGGCCAAGTTCGAGTTGGAGG
AGGTGGTGGACTTCCTCAAGAACCCTGGCAAGTACACGAAGATTGGCGCT
AGGATCCCGCGAGGTGTGATTCTCGAGGGGCCGCCGGGTACAGGTAAGAC
GCTTCTGGCCCGGGCTGTAGCAGGCGAGGCCGGCTGTCCTTTTATCGCCA
CTTCCGGATCTGAGTTTGTCGAGATGTTTGTGGGTGTGGGTGCGGCCCGT
GTGCGCGACTTGTTCGACAAGGCGAAAGAGAACTCCCCGTGTATCATCTT
CATCGATGAGATCGACGCCGTAGGGCGGCAGCGAGGCGGCGGCATGGCCG
GCGGCAACGACGAGCGAGAGCAGACACTGAACCAGATGCTGGTGGAGATG
GACGGCTTCAGCGGAAACCCGGGCGTCATCGTCATGGCCGCGACGAACCG
TATCGACATCCTCGACGATGCTCTGCTCCGCCCAGGGCGGTTCGACCGCA
GGGTGCTGGTCGACCTTCCCAACTTCACAGGCAGAACTGCTATTCTTAAG
GTGCACGCGCGTGGCAAGCCCCTTGCACCGGATGTAGACATCGAGGGAAT
TGCCCGTCGTACCCCCGGTTTCTCTGGCGCCCAGCTCCAAAACCTGCTCA
ATGAGGCGGCGATATTTGCTGCGCGTAAGAAGCGCCCCGTGCCTAGCATC
GAGTGGGAAGATGTCGACTCTGCGGTGGACCGTCTGCTTGTCGGCCTTGA
GAAGAAGAACGCCCGCGTGAACGACGAGATGCGCAAAATGGTGGCCTACC
ACGAGTCCGGCCACGCGATTGTGGGTGCGCTCATGCCTGACTATGACACA
GTGCAAAAGGTGACGATCGTGCCGAGGACCAACGGCGCCGGCGGTTTGAC
CTTCTTCTCTCCTTCGGAGGAGCGGCTCGAGTGCGGGCTGTACTCGAAGG
GCTACATGGAGTCGCAGTTGGCCGTAGCATTGGGTGGGCGTCTGGCTGAG
GAGCTCATCTATGGAGAGGACCAGGTGATGGAGTCGTCCACGAATGTAAA
GAGTCTTAAACTCAAAGCTGGGGCGCTGGCCTTATTGATGGCATCAAGCG
AGGCCTTCATGGTTTCATCGAAAATCCGAGCGACGACGAGCAAGGCGTCT
GTCAATGGGTTCGCCAGGCGATCTGCCCTCGTATCTTCTCGGCCCCTTTC
GTTGCGTGCTCCTGTAGCACCCATGATGGCCATGGAATCTGAAGGCTTCA
ACCCCGTCCATTCTGTAGCCGCGCTCCTCGCCGCAGCAACAATTGCGTTT
TCTTCCTCTGCGCTGGCGGTAGATGTCGCCGTGTCACCGTTTGCGGAGGT
AGCATCACAGGCGCCGCCAGCTATGATGAAAAGCCAGTCTGTACAGACGG
TGGAGGACATTCGCTACTCGGACTTCGTGAGCGCGGTCGAGAAGGACGAG
ATCGAGAAGGTTTCCTTTTCGTATGATGGCAAGAAGTTGATCGCCGTCGA
CACTGATGGCATGCGTGTGAAGATGGACTCCATCCCGAACGACCCAGAAC
TTCTCACTATTCTCACCAAGCACAAGGTGGATGTTACCGTCATGCCCAAC
CAGGCCAACCAGGGCGGCGGCGGCAACTTCGGGCAGCTGGGTTCGCTCAT
CTTCCCTGCCCTCTTGTTCGGAAGCTTGCTCTTCCTCTCTCGGAGGGGCG
GTGGTCAAAACCAGGGTGGAGGCCCTCCGGGAGGAGGCATGGGCGGTGGC
GGGATGCCGGGTGGGGGCAACCCCATGGAATTCACCAAGTCAAAGGGGAA
GTTGGAGGTGAACCCTGACACGGGTGTCACCTTCGATCAGGTTGCAGGCT
GCGACTCGGCCAAGTTCGAGTTGGAGGAGGTGGTGGACTTCCTCAAGAAC
CCTGGCAAGTACACGAAGATTGGCGCTAGGATCCCGCGAGGTGTGATTCT
CGAGGGGCCGCCGGGTACAGGTAAGACGCTTCTGGCCCGGGCTGTAGCAG
GCGAGGCCGGCTGTCCTTTTATCGCCACTTCCGGATCTGAGTTTGTCGAG
ATGTTTGTGGGTGTGGGTGCGGCCCGTGTGCGCGACTTGTTCGACAAGGC
GAAAGAGAACTCCCCGTGTATCATCTTCATCGATGAGATCGACGCCGTAG
GGCGGCAGCGAGGCGGCGGCATGGCCGGCGGCAACGACGAGCGAGAGCAG
ACACTGAACCAGATGCTGGTGGAGATGGACGGCTTCAGCGGAAACCCGGG
CGTCATCGTCATGGCCGCGACGAACCGTATCGACATCCTCGACGATGCTC
TGCTCCGCCCAGGGCGGTTCGACCGCAGGGTGCTGGTCGACCTTCCCAAC
TTCACAGGCAGAACTGCTATTCTTAAGGTGCACGCGCGTGGCAAGCCCCT
TGCACCGGATGTAGACATCGAGGGAATTGCCCGTCGTACCCCCGGTTTCT
CTGGCGCCCAGCTCCAAAACCTGCTCAATGAGGCGGCGATATTTGCTGCG
CGTAAGAAGCGCCCCGTGCCTAGCATCGAGTGGGAAGATGTCGACTCTGC
GGTGGACCGTCTGCTTGTCGGCCTTGAGAAGAAGAACGCCCGCGTGAACG
ACGAGATGCGCAAAATGGTGGCCTACCACGAGTCCGGCCACGCGATTGTG
GGTGCGCTCATGCCTGACTATGACACAGTGCAAAAGGTGACGATCGTGCC
GAGGACCAACGGCGCCGGCGGTTTGACCTTCTTCTCTCCTTCGGAGGAGC
GGCTCGAGTGCGGGCTGTACTCGAAGGGCTACATGGAGTCGCAGTTGGCC
GTAGCATTGGGTGGGCGTCTGGCTGAGGAGCTCATCTATGGAGAGGACCA
GGTG
back to top