mRNA_H-paniculata_contig63636.14166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63636.14166.1
Unique NamemRNA_H-paniculata_contig63636.14166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: D7FS36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS36_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.750e-21
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   10 GPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLVSLT 177
            GPLI ERDLYLAWTLKRSRAVCGQRRVVGVVGR H+ GVMRAV  D+GG+TLV  T
Sbjct:  389 GPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGRGHLAGVMRAVETDRGGDTLVFKT 444          
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A836CI89_9STRA (TraB family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI89_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.000e-19
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLV 168
            L  PL+ ERD YLAW+LKRSRAVCG+ RVVGVVGRAH+PGV++A+  D GG+TL+
Sbjct:  236 LVAPLVHERDAYLAWSLKRSRAVCGKSRVVGVVGRAHLPGVLKAIQGDNGGDTLI 290          
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A835WWV0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WWV0_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 1.040e-14
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETL 165
            L  PLI ERDLYLAW+LKRS+AVCG  RVVGVVGR H+ GV  A+ +D+GG  L
Sbjct:  308 LVAPLITERDLYLAWSLKRSKAVCGAGRVVGVVGRGHLRGVAHALLRDRGGAGL 361          
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A2J7ZHL2_9CHLO (TraB domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZHL2_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 1.260e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETL 165
            L  PL+ ERDLYLAW+LKRSRAV G  RVVGVVGR H+ G++ A+ KD+GG  L
Sbjct:   88 LVAPLVTERDLYLAWSLKRSRAVNGAARVVGVVGRGHLRGLVYALMKDQGGAGL 141          
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A7S3QXF0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QXF0_DUNTE)

HSP 1 Score: 74.3 bits (181), Expect = 3.040e-14
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLVSLTDLRPN 192
            L  PLI ERD+YLAW+LKRS+AV G R+VVGVVG  HV GVM A+ +D GG+TL   +DL  N
Sbjct:  205 LISPLIRERDVYLAWSLKRSKAVNGTRQVVGVVGAGHVKGVMWALEQDAGGDTL-RFSDLVSN 266          
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A835T9G5_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T9G5_CHLIN)

HSP 1 Score: 73.9 bits (180), Expect = 7.300e-14
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETL 165
            L  PLI ERDLYLAW+LKRS+AVCG   VVGVVGR H+ GV  A+ +D+GG  L
Sbjct:  337 LVAPLITERDLYLAWSLKRSKAVCGAGTVVGVVGRGHLRGVAHALLRDRGGAGL 390          
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A2K3CVA3_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CVA3_CHLRE)

HSP 1 Score: 73.9 bits (180), Expect = 7.480e-14
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETL 165
            L  PLI ERDLYLAW+LKRS+AVCG   VVGVVGR H+ GV  A+ +D+GG  L
Sbjct:  362 LVAPLITERDLYLAWSLKRSKAVCGTGTVVGVVGRGHLRGVAHALLRDRGGAGL 415          
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A7N2RAF0_QUELO (Uncharacterized protein n=7 Tax=Fagaceae TaxID=3503 RepID=A0A7N2RAF0_QUELO)

HSP 1 Score: 69.7 bits (169), Expect = 8.830e-13
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 LLQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLVSLTDLRPNG 195
            LLQ PLI ERD YLAW+LKRS+AV   +RVVGV+G+ H+ GV+ A+  D G      L   RPNG
Sbjct:  148 LLQ-PLIHERDTYLAWSLKRSKAVNNSKRVVGVIGKGHMNGVIYALVSDLGDLRFRDLAGKRPNG 211          
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A7S0T734_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T734_9RHOD)

HSP 1 Score: 67.0 bits (162), Expect = 1.120e-12
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLVSLTDLRPN 192
            L   LI ERDLYL W+LKRS+AV   RRVVG+VG  H+ G+ R  A+D G E     T+  PN
Sbjct:   13 LARALIIERDLYLCWSLKRSKAVSSARRVVGIVGAGHLAGITRQYARDAGNEPNDDNTNSNPN 75          
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: R7QA16_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA16_CHOCR)

HSP 1 Score: 70.1 bits (170), Expect = 1.130e-12
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKD-----KGGETLVSLTDL 183
            L+  L++ERDLY+AW LKRSRAV G++ VVGVVGRAHV G++RA+ +D     +G + L+   D+
Sbjct:  241 LRRTLVEERDLYMAWVLKRSRAVSGKKCVVGVVGRAHVDGIVRALEEDDRRRREGEQPLLRFRDI 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS36_ECTSI1.750e-2182.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CI89_9STRA7.000e-1969.09TraB family-domain-containing protein n=1 Tax=Trib... [more]
A0A835WWV0_9CHLO1.040e-1466.67Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A2J7ZHL2_9CHLO1.260e-1464.81TraB domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S3QXF0_DUNTE3.040e-1461.90Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A835T9G5_CHLIN7.300e-1464.81Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A2K3CVA3_CHLRE7.480e-1464.81Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A7N2RAF0_QUELO8.830e-1355.38Uncharacterized protein n=7 Tax=Fagaceae TaxID=350... [more]
A0A7S0T734_9RHOD1.120e-1252.38Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
R7QA16_CHOCR1.130e-1252.31Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63636contigH-paniculata_contig63636:124..321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog2880.D7FS36
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TraB family
EggNOG OGsCOG1916@1,KOG2860@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930735.6968935-CDS-H-paniculata_contig63636:123..3211622930735.6968935-CDS-H-paniculata_contig63636:123..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63636 124..321 -
1691481428.9116838-CDS-H-paniculata_contig63636:123..3211691481428.9116838-CDS-H-paniculata_contig63636:123..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63636 124..321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63636.14166.1prot_H-paniculata_contig63636.14166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63636 124..321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63636.14166.1

>prot_H-paniculata_contig63636.14166.1 ID=prot_H-paniculata_contig63636.14166.1|Name=mRNA_H-paniculata_contig63636.14166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
LLQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDK
GGETLVSLTDLRPNG*
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mRNA from alignment at H-paniculata_contig63636:124..321-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63636.14166.1 ID=mRNA_H-paniculata_contig63636.14166.1|Name=mRNA_H-paniculata_contig63636.14166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig63636:124..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTGCAAGGCCCTTTGATTGACGAGAGAGACCTGTACCTAGCGTGGAC GCTAAAGCGTAGCAGAGCGGTGTGCGGACAAAGGCGTGTGGTCGGGGTTG TGGGGCGAGCCCATGTGCCGGGGGTGATGCGAGCTGTTGCCAAAGACAAA GGCGGGGAAACGTTGGTGAGCCTCACGGACCTACGCCCGAACGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig63636:124..321-

>mRNA_H-paniculata_contig63636.14166.1 ID=mRNA_H-paniculata_contig63636.14166.1|Name=mRNA_H-paniculata_contig63636.14166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig63636:124..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTGCAAGGCCCTTTGATTGACGAGAGAGACCTGTACCTAGCGTGGAC
GCTAAAGCGTAGCAGAGCGGTGTGCGGACAAAGGCGTGTGGTCGGGGTTG
TGGGGCGAGCCCATGTGCCGGGGGTGATGCGAGCTGTTGCCAAAGACAAA
GGCGGGGAAACGTTGGTGAGCCTCACGGACCTACGCCCGAACGGGTAGTT
GTTGCAAGGCCCTTTGATTGACGAGAGAGACCTGTACCTAGCGTGGACGC
TAAAGCGTAGCAGAGCGGTGTGCGGACAAAGGCGTGTGGTCGGGGTTGTG
GGGCGAGCCCATGTGCCGGGGGTGATGCGAGCTGTTGCCAAAGACAAAGG
CGGGGAAACGTTGGTGAGCCTCACGGACCTACGCCCGAACGGGTAG
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