mRNA_H-paniculata_contig63636.14166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: D7FS36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS36_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 1.750e-21 Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 1
Query: 10 GPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLVSLT 177
GPLI ERDLYLAWTLKRSRAVCGQRRVVGVVGR H+ GVMRAV D+GG+TLV T
Sbjct: 389 GPLIYERDLYLAWTLKRSRAVCGQRRVVGVVGRGHLAGVMRAVETDRGGDTLVFKT 444
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A836CI89_9STRA (TraB family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI89_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 7.000e-19 Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1
Query: 4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLV 168
L PL+ ERD YLAW+LKRSRAVCG+ RVVGVVGRAH+PGV++A+ D GG+TL+
Sbjct: 236 LVAPLVHERDAYLAWSLKRSRAVCGKSRVVGVVGRAHLPGVLKAIQGDNGGDTLI 290
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A835WWV0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WWV0_9CHLO) HSP 1 Score: 76.3 bits (186), Expect = 1.040e-14 Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETL 165
L PLI ERDLYLAW+LKRS+AVCG RVVGVVGR H+ GV A+ +D+GG L
Sbjct: 308 LVAPLITERDLYLAWSLKRSKAVCGAGRVVGVVGRGHLRGVAHALLRDRGGAGL 361
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A2J7ZHL2_9CHLO (TraB domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZHL2_9CHLO) HSP 1 Score: 72.4 bits (176), Expect = 1.260e-14 Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETL 165
L PL+ ERDLYLAW+LKRSRAV G RVVGVVGR H+ G++ A+ KD+GG L
Sbjct: 88 LVAPLVTERDLYLAWSLKRSRAVNGAARVVGVVGRGHLRGLVYALMKDQGGAGL 141
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A7S3QXF0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QXF0_DUNTE) HSP 1 Score: 74.3 bits (181), Expect = 3.040e-14 Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLVSLTDLRPN 192
L PLI ERD+YLAW+LKRS+AV G R+VVGVVG HV GVM A+ +D GG+TL +DL N
Sbjct: 205 LISPLIRERDVYLAWSLKRSKAVNGTRQVVGVVGAGHVKGVMWALEQDAGGDTL-RFSDLVSN 266
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A835T9G5_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T9G5_CHLIN) HSP 1 Score: 73.9 bits (180), Expect = 7.300e-14 Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETL 165
L PLI ERDLYLAW+LKRS+AVCG VVGVVGR H+ GV A+ +D+GG L
Sbjct: 337 LVAPLITERDLYLAWSLKRSKAVCGAGTVVGVVGRGHLRGVAHALLRDRGGAGL 390
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A2K3CVA3_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CVA3_CHLRE) HSP 1 Score: 73.9 bits (180), Expect = 7.480e-14 Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETL 165
L PLI ERDLYLAW+LKRS+AVCG VVGVVGR H+ GV A+ +D+GG L
Sbjct: 362 LVAPLITERDLYLAWSLKRSKAVCGTGTVVGVVGRGHLRGVAHALLRDRGGAGL 415
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A7N2RAF0_QUELO (Uncharacterized protein n=7 Tax=Fagaceae TaxID=3503 RepID=A0A7N2RAF0_QUELO) HSP 1 Score: 69.7 bits (169), Expect = 8.830e-13 Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 1 LLQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLVSLTDLRPNG 195
LLQ PLI ERD YLAW+LKRS+AV +RVVGV+G+ H+ GV+ A+ D G L RPNG
Sbjct: 148 LLQ-PLIHERDTYLAWSLKRSKAVNNSKRVVGVIGKGHMNGVIYALVSDLGDLRFRDLAGKRPNG 211
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: A0A7S0T734_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T734_9RHOD) HSP 1 Score: 67.0 bits (162), Expect = 1.120e-12 Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKGGETLVSLTDLRPN 192
L LI ERDLYL W+LKRS+AV RRVVG+VG H+ G+ R A+D G E T+ PN
Sbjct: 13 LARALIIERDLYLCWSLKRSKAVSSARRVVGIVGAGHLAGITRQYARDAGNEPNDDNTNSNPN 75
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Match: R7QA16_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA16_CHOCR) HSP 1 Score: 70.1 bits (170), Expect = 1.130e-12 Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 4 LQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKD-----KGGETLVSLTDL 183
L+ L++ERDLY+AW LKRSRAV G++ VVGVVGRAHV G++RA+ +D +G + L+ D+
Sbjct: 241 LRRTLVEERDLYMAWVLKRSRAVSGKKCVVGVVGRAHVDGIVRALEEDDRRRREGEQPLLRFRDI 305 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63636.14166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig63636.14166.1 >prot_H-paniculata_contig63636.14166.1 ID=prot_H-paniculata_contig63636.14166.1|Name=mRNA_H-paniculata_contig63636.14166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp LLQGPLIDERDLYLAWTLKRSRAVCGQRRVVGVVGRAHVPGVMRAVAKDKback to top mRNA from alignment at H-paniculata_contig63636:124..321- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig63636.14166.1 ID=mRNA_H-paniculata_contig63636.14166.1|Name=mRNA_H-paniculata_contig63636.14166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig63636:124..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig63636:124..321- >mRNA_H-paniculata_contig63636.14166.1 ID=mRNA_H-paniculata_contig63636.14166.1|Name=mRNA_H-paniculata_contig63636.14166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig63636:124..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |