mRNA_H-paniculata_contig6359.14158.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6359.14158.1
Unique NamemRNA_H-paniculata_contig6359.14158.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6359.14158.1 vs. uniprot
Match: D8LJR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR8_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 5.810e-50
Identity = 212/601 (35.27%), Postives = 282/601 (46.92%), Query Frame = 1
Query:  253 MVRG-LDEPEKDPSLFPESRVRPWVLDDAAELKVQDMRDEFEKTLTFVSPVKEGLEKSLLDRMVPEDKRCHMFLEELARLKVDRAAADRRKASGKWVIQPIGEVFEDLSRETHGLSPKAKQKSVIDCS-TEGLRSEESIRATDEGNSELEQERQDVETMEIGG------HGG--------LAEDSDVARLVDLLHK--VDSEFCTSSEAGSEIGSSQNSHDSGTESRV------------EEETDERGQCA------DGRNGGGVGRCELGDLEHDAADEGLVSGDAANSQSNGRERNAGGSRSTEGRQAIKNQQEEPSRIQQTDAQHLTQQXXXXXQPHGRIDISRMKIDGTERGKVVGP--RPRSAPSTCLSAGGFSQLSR--TSSSHLARTVSQKLLQAEREVAQLKSLDAK-----------------EVVPAPPLLAIAEPGVGIDTVKQNADALQASKAVKRTSYLKGYRPRTTKWPARDTDAQDVSDAGRKGVSSM--LYSLSVENEGSAVTRKQRSITAGNRRR--NRTRLVVVGGSRSTTLLTRTERDFVFGK-TASAVVPATSAATGADGI-QPTSYRPPSARYTTPGKML 1866
            M +G +D+PE+DP+LFPE RVRPWV+DD AE K++++RD+ E+TLT +SPVKEG+ +S+LDR +  D    +F +ELA L+    A      SG   + PIGE+FEDL RETHGL P+ +  + +     EG    E I     G  E+E        +  GG      H G        LA D DV RL+  L    VD   C S  + +E+G                          +  TD+ GQ A      DG NG  +   E    +H A  E   S +AA          AG  R++  R     +   P  ++                   R+DISRMKIDG       GP  RPRSAPS CLSAGGFS+LS   +SSS LAR VSQ+L++A REV   ++ +A+                  + P+     IA+    ID VKQNA+ALQAS +VKRT YL   +PR  +W  RD D       G +G  S     S S     +AV ++ ++  A NRR   +  R      +    LL   E +F+FG  TA  VV A              S R PS R TT G+ML
Sbjct:    1 MAKGDVDDPEEDPALFPERRVRPWVVDDDAERKMEELRDDLERTLTSISPVKEGMGESILDRTLRSDNSGELFFKELASLEAKDRAKVAGVTSGCVSLYPIGEIFEDLYRETHGLPPRNQNHAYVQHEGDEGNCRPEEIH----GAPEVESSAPPAAAVRKGGGRGSRGHDGGGGEGCCELATDPDVVRLLAELQAGLVDDPNCCSDGSDAELGGEGKXXXXXXXXXXXXXXXXXXXXXGDRXTDQEGQEAAGDETKDGTNGPRLASEE----QHPAGGE---SAEAA----------AGKERASSPRGG---EHHNPEVVR-------------------RVDISRMKIDGG------GPQARPRSAPSACLSAGGFSRLSSRASSSSRLARAVSQRLMEATREVEGQRAPEAQGGGGDCDRGAGRGEATGRLRPSTSASRIAQADERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLP----LGPRGQPSAPRAASHSAAPPPAAVRQRPKTAVAKNRRPRPHNNRGHAGNTNNGNPLLNHRETEFLFGAGTAPEVVAAXXXXXXXXXXXDDVSRRAPSLRKTTLGRML 548          
BLAST of mRNA_H-paniculata_contig6359.14158.1 vs. uniprot
Match: A0A6H5KY38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY38_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.300e-34
Identity = 174/514 (33.85%), Postives = 231/514 (44.94%), Query Frame = 1
Query:  349 VQDMRDEFEKTLTFVSPVKEGLEKSLLDRMVPEDKRCHMFLEELARLKVDRAAADRRK----ASGKWVIQ-PIGEVFEDLSRETHGLSPKAKQKSVI-DCSTEGLRSEESIRATDEGNSELEQERQDVETMEIGGHGG------------LAEDSDVARLVDLLHK--VDSEFCTSSEAGSEIGSSQNSHDSGTESRVEEETDERGQCADGRNGGGVGRCELGDLEHDAADEGLVSGDAANSQSNGRERNAGGSRSTEGRQAIKNQQEEPSRIQQTDAQHLTQQXXXXXQPHG-----RIDISRMKIDGTERGKVVGPRPRSAPSTCLSAGGFSQLSR--TSSSHLARTVSQKLLQAEREVAQLKSLDAK-----------------EVVPAPPLLAIAEPGVGIDTVKQNADALQASKAVKRTSYLKGYRPRTTKWPARDTDAQDVSDAGRKGVSSMLYSLSVENEGSAVTRKQRSITAGNRRR--NRTRLVVVGGSRSTTLLTRTERDFVFG 1752
            ++++RD+ E+TLT +SP+KEG  +S+LDR +  D    +F +ELA L+    A DR K    A G  V Q PIGE+FE+L RETHGL P+ +  + + D   EG    E      E  S        V   + GG G             LA D DV RL+  L    VD   C S  + +E+G              E +             G     + GD   D   +   +GD  N  +NG             R A + Q                  XXXXX  H      R+DISRMKIDG +       RPRSAPS CLSAGGFS+LS   +SSS LART+SQ+L++A REV   ++ +A+                  + P+     IA     ID VKQNA+ALQAS +VKRT YL   +PR  +W  RD D    S     G      S S     SAV  + ++  A NRR   + +R      +    LL R E +F+FG
Sbjct:    1 MEELRDDLERTLTSISPIKEGTSESILDRTLRSDNSGELFFKELASLE----AKDRTKVAGVAPGGCVSQYPIGEIFENLYRETHGLPPRKQNHAYVQDDGDEGNSRPEEHHGVPEVESSAPPA---VAVRDEGGRGSRHHDGGGEGYCELAADPDVVRLLAQLQAGLVDDPNCCSDGSDTEVGG-------------EGKXXXXXXXXXXXXXGKKRETDEGDRGADQGGQEEAAGDETNDGTNGP------------RLASEEQHPXXXXXXXXXXXXXXXXXXXXXXXHNPKVVRRVDISRMKIDGID----PQARPRSAPSACLSAGGFSRLSSRASSSSRLARTMSQRLMEATREVEGQRAPEAQGGGVDCGRGAGRGEAAGRLRPSTSASRIALAEERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPVGSRGQPSGT--RAASRSGAPPPSAVRERPKTAVAKNRRHCPHNSRGHAGNTNNGNPLLNRRETEFLFG 476          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6359.14158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJR8_ECTSI5.810e-5035.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY38_9PHAE1.300e-3433.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6359contigH-paniculata_contig6359:6324..12188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003020.1
Exons6
Model size2952
Cds size2058
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6359.14158.1prot_H-paniculata_contig6359.14158.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6359 6576..11546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930734.6137168-UTR-H-paniculata_contig6359:6323..65751622930734.6137168-UTR-H-paniculata_contig6359:6323..6575Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6359 6324..6575 +
1691481428.413052-UTR-H-paniculata_contig6359:6323..65751691481428.413052-UTR-H-paniculata_contig6359:6323..6575Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6359 6324..6575 +
1622930734.7207806-UTR-H-paniculata_contig6359:11546..121881622930734.7207806-UTR-H-paniculata_contig6359:11546..12188Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6359 11547..12188 +
1691481428.4919078-UTR-H-paniculata_contig6359:11546..121881691481428.4919078-UTR-H-paniculata_contig6359:11546..12188Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6359 11547..12188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930734.6332529-CDS-H-paniculata_contig6359:6575..66021622930734.6332529-CDS-H-paniculata_contig6359:6575..6602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 6576..6602 +
1691481428.423177-CDS-H-paniculata_contig6359:6575..66021691481428.423177-CDS-H-paniculata_contig6359:6575..6602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 6576..6602 +
1622930734.6454725-CDS-H-paniculata_contig6359:6782..68511622930734.6454725-CDS-H-paniculata_contig6359:6782..6851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 6783..6851 +
1691481428.432658-CDS-H-paniculata_contig6359:6782..68511691481428.432658-CDS-H-paniculata_contig6359:6782..6851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 6783..6851 +
1622930734.661766-CDS-H-paniculata_contig6359:7271..74811622930734.661766-CDS-H-paniculata_contig6359:7271..7481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 7272..7481 +
1691481428.4427376-CDS-H-paniculata_contig6359:7271..74811691481428.4427376-CDS-H-paniculata_contig6359:7271..7481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 7272..7481 +
1622930734.6752481-CDS-H-paniculata_contig6359:7860..87661622930734.6752481-CDS-H-paniculata_contig6359:7860..8766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 7861..8766 +
1691481428.455551-CDS-H-paniculata_contig6359:7860..87661691481428.455551-CDS-H-paniculata_contig6359:7860..8766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 7861..8766 +
1622930734.6916008-CDS-H-paniculata_contig6359:9786..106091622930734.6916008-CDS-H-paniculata_contig6359:9786..10609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 9787..10609 +
1691481428.471894-CDS-H-paniculata_contig6359:9786..106091691481428.471894-CDS-H-paniculata_contig6359:9786..10609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 9787..10609 +
1622930734.7076178-CDS-H-paniculata_contig6359:11523..115461622930734.7076178-CDS-H-paniculata_contig6359:11523..11546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 11524..11546 +
1691481428.4829118-CDS-H-paniculata_contig6359:11523..115461691481428.4829118-CDS-H-paniculata_contig6359:11523..11546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6359 11524..11546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6359.14158.1

>prot_H-paniculata_contig6359.14158.1 ID=prot_H-paniculata_contig6359.14158.1|Name=mRNA_H-paniculata_contig6359.14158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=686bp
MVRGLDEPEKDPSLFPESRVRPWVLDDAAELKVQDMRDEFEKTLTFVSPV
KEGLEKSLLDRMVPEDKRCHMFLEELARLKVDRAAADRRKASGKWVIQPI
GEVFEDLSRETHGLSPKAKQKSVIDCSTEGLRSEESIRATDEGNSELEQE
RQDVETMEIGGHGGLAEDSDVARLVDLLHKVDSEFCTSSEAGSEIGSSQN
SHDSGTESRVEEETDERGQCADGRNGGGVGRCELGDLEHDAADEGLVSGD
AANSQSNGRERNAGGSRSTEGRQAIKNQQEEPSRIQQTDAQHLTQQQQQQ
QQPHGRIDISRMKIDGTERGKVVGPRPRSAPSTCLSAGGFSQLSRTSSSH
LARTVSQKLLQAEREVAQLKSLDAKEVVPAPPLLAIAEPGVGIDTVKQNA
DALQASKAVKRTSYLKGYRPRTTKWPARDTDAQDVSDAGRKGVSSMLYSL
SVENEGSAVTRKQRSITAGNRRRNRTRLVVVGGSRSTTLLTRTERDFVFG
KTASAVVPATSAATGADGIQPTSYRPPSARYTTPGKMLGHVAPAADATTS
RRRYQTRKPGYDCSANSRVGGRRACSSSLGGSVMPKHVNSRRGGKMVRTR
PTSAVPSDQGRSSVAFTTSPSREAKSSRSTEKRASQPLGSREESFRSSGC
PWIENVVQSGTTLVDPSPAPDVLVEERSGHVEEAD*
back to top

mRNA from alignment at H-paniculata_contig6359:6324..12188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6359.14158.1 ID=mRNA_H-paniculata_contig6359.14158.1|Name=mRNA_H-paniculata_contig6359.14158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5865bp|location=Sequence derived from alignment at H-paniculata_contig6359:6324..12188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGGAGTATGCGTAATATATCATTTGCTATCGGGGTTGCTGTTGATATT TCCAAGGGCTGTCCGGGGTGCTTTGTGGCGATTCTACTCTATGACCAACG GGAACTGATTATAGCTCTGCGATTCGGATCTGTAACCGTCTCCATATCTC CATGCACATTATCAACTTCCCGCACACAACTGCGATGTGGCTGTGCATTT TTTTTGCTGGGCTCGAGGGTAGTCATTCTCTACCCGCCTGGTTGTCTTCA CCATGGTACGGGGCCTCGATGAACCAGAGGTAAAAAATTGACATTGTGTG TTAACTTACCAGAAAGGCGTATAAAGTTGTAGTTGGTAGATCGTCTGTGG CATAGGACCTGTCGTGAAGGGCATTCATTGGTCATGTAATCCATGCCAAC ACATCATCTCCTGCTCGCTCCACCCCACACTTTCGTACTTGTTTCTCGTC TCCTCGCAGAAAGACCCATCTTTGTTCCCGGAAAGTAGGGTACGGCCGTG GGTACTTGACGACGCGGCAGAGCTCAAGGTACATTATACTATTCATGACG ACACTCGACCGGCAGAAAAAGCAAGATGTGTCAGGTTGTACTGTAATGCC GTCGTGTTTGATGTTTGGATGTGTCTTGATGGGAGTGATAACTTCAACCG AACCGCGCGACGAATTATAAATATCTCATGTAGTTGTTGACGTGGAGTAA TGTATTCGCTGACGACACACACACACGTGGTATACAAAGCCTTGCTTGGC CTACACAGGTGAGACTGGAGAAAACATGAACCAATCTGAAATATCGTTTT GGGTAGAGATCTGTAGCTGAACATGAGTATACGGACTATACAGTCAGTAT CACAGTCCGCCATCCGTGCTATCCTTGTATGTACAAGTAATTAGAAGAGG CCGAACTCTCCCGTTCACAGTTGTCCTGCATATGGCGGGTCAATACAGGT TCAGGATATGCGCGATGAATTCGAGAAAACTTTGACTTTCGTATCGCCAG TGAAGGAGGGGTTGGAGAAGAGTCTTCTCGATCGAATGGTTCCCGAGGAC AAGCGATGTCACATGTTCCTCGAAGAGCTGGCGCGTCTTAAAGTCGACAG AGCAGCTGCGGATCGGCGAAAAGCTTCTGGAAAGTGGGTTATTCAACCGA TTGGAGAGGTTCGTTCGGCCTATAAATGATGACCAAATTTCGCAATGTAC TAATTCCATAACTTCCTCACCCTGGCCTCTGAAAGCGTCACGTGTCCTGA GTAGTGAGGTCTTCGCTGTGTTCGCATCGAGCCCTGTTAAATTTGCCTTA TTTTGACGGAAGTTAAGCACCGTTTCTCACAATTGTTTTTATGTATTTTT TAACCAAGCCTCTATTATCAGCAACATGATTCTTAACAGGAGATCGGTGC AATGTTGTTAACAGAGATCTCGGATATGCTGTGCATATTCCGTTTTTATC GATTTTTCATTGGGGTGTGTTATGCACACACAAGTGCATGCTCTAATACC GAATTTCCATAACTCATACTCTTCAACATGGCTCCAGGTCTTCGAGGACC TGTCCAGAGAGACGCATGGTCTGTCTCCAAAAGCAAAACAGAAGTCTGTG ATTGACTGCAGTACGGAGGGGCTCAGGAGCGAGGAAAGTATACGCGCAAC GGATGAGGGAAACTCAGAACTGGAACAGGAGAGGCAGGATGTCGAGACCA TGGAAATAGGAGGGCACGGTGGACTAGCCGAGGATTCAGATGTCGCACGC CTGGTGGATTTGCTGCACAAAGTTGACTCTGAGTTTTGCACCAGTAGTGA AGCTGGTTCTGAGATCGGCAGCAGTCAGAATAGCCACGATAGTGGTACCG AGAGTAGAGTCGAGGAAGAAACTGACGAGCGTGGCCAATGCGCCGATGGT CGAAACGGAGGGGGTGTTGGACGATGTGAGCTTGGCGATCTAGAACACGA TGCAGCAGATGAGGGACTCGTTTCGGGGGATGCCGCAAATAGTCAATCCA ATGGGCGAGAAAGGAACGCGGGCGGAAGTCGAAGTACAGAGGGCAGGCAA GCTATCAAGAATCAACAAGAAGAACCATCGCGCATACAACAAACCGACGC GCAGCATCTCACACAGCAGCAACAGCAACAGCAGCAGCCACACGGGAGAA TAGATATTAGCAGAATGAAAATCGACGGAACAGAGCGAGGGAAAGTTGTG GGTCCTCGACCGCGCTCAGCGCCATCAACATGCCTTTCTGCGGGAGGCTT TTCGCAGCTGTCTCGCACGTCCTCATCGCACCTCGCGCGTACAGTTAGCC AAAAGCTACTCCAGGCGGAGAGGGAAGTCGCACAACTCAAGAGTTTGGAC GCAAAGGAAGTAGTGCCCGCACCACCTTTGTTAGCGATTGCGGAACCTGG AGTCGGGATTGACACCGTGAAGCAAAACGCGGACGCGCTTCAGGTGCTTT TTATGGAGTTGATCAAGAACGAGTTGGGTAGCTTCTATCGATGGAATTGT ACCATCTAGCATCTATCTGCACAAGTATGCAATCAGATGAAACGCCTCTG GAATCATCCAAAAAAATGTACTGTGTCAAGGGTGAAGCGATTGTCATGAT CAATGGCATGGCACTCACGCCATCTACGTCATATTCGAGAGTACAGCATG TAACAGTGTTTTGATGGGATTGGGGGGAAAAAAATATCGAGTTTGAGAGC AAAGATCCGGCAGTCAGAAAATAACGTATTTTGTGCGTTTACACTTCTTA TGAACGTTCAGTCCTCCTCGAAGAAAAAAAAGGGAGTTCACCAATTCCGG AGGTGTTGCGGAAAATCACTTTTCACTGTACACGGAATCGATTGAAAGGT TTTCGTCTGTTCTTAAACCTCGAATTTCAATGTTGTTCGATTCGGATGTA GGATACATCGTATTGACCGCCAGCTCGGCGCTGTCGTTTTTTGTGAAGGG TGCACAGGTCGAATCGTCGATCTTTGCTCTCAAAATCTCGCACTTTTATG TGCTAAACGAGGCTATTCCCCCTGTTTTTTTCCCGTTTCCCCTTGTCCAA GAGTTCGAAATGGCGATAGCAAAAACTTCAATCGGGGAACAAGTGTGGGT CTGTCGTACATGGTGTTACCCTCCTACATTCCGTTCAATTAGGCCATTTT CTTCCACAAATTTGAGTTCGCTGTGGCAGTCTCCGATTTCGAGAAATGAA CAACGGGAAAAACGGCCTCGTTTAGCACATACCTAAGCGCGGATGCCAGG ACGGTCCGACCGTATCACTAGAGGAGACTTCTACATTACCACAACTTGCA ATAATAAATCTGAAGGCTGCCCAGCCGTTGCCCACACGAACTTTTGTCTT GCGTCGGTACCCTCGAGTGACCCCCGTGTGCAACTGTGTATCAGGTATTT CTGATACTTAGTACGCCAACAAGACTCAGTCATTGATCAAATGCTTTCTC TATTGATGTGCAGGCGAGCAAGGCAGTGAAGCGAACGAGCTACCTAAAGG GCTACCGCCCACGAACTACCAAGTGGCCTGCGCGTGACACCGATGCACAG GACGTATCGGATGCTGGCCGCAAGGGGGTTAGTTCCATGTTGTATTCGTT GTCCGTCGAAAACGAAGGTTCTGCTGTTACCAGGAAACAGCGATCAATCA CAGCGGGCAACCGACGGAGGAATCGGACCCGCCTGGTAGTCGTCGGTGGC TCTAGAAGTACCACGTTGCTCACTCGAACAGAGCGAGATTTTGTCTTTGG AAAAACCGCATCAGCAGTAGTTCCAGCGACCTCTGCGGCGACGGGTGCTG ACGGAATCCAGCCCACGTCGTATCGGCCACCCTCAGCCCGGTACACGACC CCGGGGAAGATGCTTGGGCATGTTGCTCCGGCAGCAGATGCGACAACGTC CCGGCGACGATATCAAACCCGAAAACCAGGATATGATTGCAGTGCCAACT CTCGCGTGGGAGGCAGGCGAGCGTGCAGCAGTTCTCTCGGTGGAAGCGTC ATGCCGAAACATGTTAACAGTAGGAGAGGTGGAAAGATGGTGAGGACAAG ACCCACGAGTGCCGTGCCCAGCGACCAAGGGAGGTCTTCTGTAGCCTTCA CCACGTCCCCCTCGAGAGAAGCAAAGTCGTCTAGGAGTACAGAAAAACGT GCGTCGCAGCCCTTGGGCAGTCGAGAGGAATCTTTTAGGTCTAGTGGATG CCCATGGATCGAGAATGTGGTGCAGAGCGGCACAACCTTGGTGGATCCTT CTCCGGCCCCTGATGTCTTGGTTGAGGAGCGGTCAGGTATTATTACGGGA GGGGGGAACACCAAGAATTTGAAGCTGCTAAGGTTGAGAAGGGATGGAAG GCGTGAAATGAATGTGCACCTACCTTTGAACCTTTGAAGGCGGCTCTTCA GACCGCGGTAGGCTCAGTGACACTGCAGACGCAGGTCGTGCGCGCTAGAA AGGTAATAACAGATATGAAGAGAATCAACATCAAGGACAGCACTCTTGGC CACACAAATGCGTTTGTCTAACGTTTTTTGCTTGGTCAAAATATTAATCT TTAATACCTTCCAACGGCAGGAGGTAATCAACGATATTGCATGTGGTTCG CAAAGCACGTCCTCGCTGCGATGACGGTGTGTATCACTAAATTTGGTGCC CGTTCTTGCCGGGACAAGCGTGGTATTCCCGCGTTGTCGTACACTGCTAG CCAGGATATCCCCGAATCATAACCATGCGTCGAACTTTGGAGGAAGAGCA CCCACAGAACTTAATATTCCTCCCGGCGAGCGAATTTCCTGTGTCAATGC CTGTTTCATTGTAATGTGTCTACTGGCGGTCCTCATTGCGGCATATTCCA CACTCCGTATTTTTGAAGCTACCCTGTGATCAATCTCGCACGGCCTATGC TGAACAGAGAGAAGTAACGACAGCTCAAATCGTAGGCGGTATGTTGAGCC GCCTTCTTTGCTAAGAAAAGTTGCTTACTCACGCGCCATTCTATCAAATT CGTCTATACCAAGGCTTGTTTTATCTTCCTCAAACACCGTCTTACACTTG ACAAAATGAATATTGCTGAAATAGGTGCGGTTGGCAGTCCGTCCTGTAAA GCTCTATAAACTTGACTATATTCTGTAGAGGATGCAATGATACCAATTGT CAGCGATGCTCATTTGAATGCGTCATCGCTACACAACCGAAAAATGGCAG GTCATGTCGAAGAAGCGGATTAACGCGGAGTGCTGGACAGGCGAAAGCAA TCGCTGTTTTTTATATCATCCGTTGCAGTAAAGTACTGCGAGAAATCAGG CATCTACTGCGAGGTTTCTATGACGGCGACCAGCCTCTCATAGCGGACGT ATCAACAATAGCTGTATGGACGTGCGAATTCCTACCATAACTACAACATT CATTTCTTTGCTTGTTTATCTGAGTGTCCCCAAGCACAATTGCCCCAATT TACTTTGCCAACTAGTTTATGAACAGGAGAACCACTATCAAATTCGTATT AGTAATCACACCGTTGAAGTTCTTGGACGGGTCAAATATGTATTTTAATG TTTCGTTGATGACGTTATAATTTTTTTCAATCACAATTCAGACCCAGCGC ACTGTTTAAACAGGTAGAGGTTAGGGTTTGGGCGACATCAGAGCTGCTAC GGCAATATGCTAAGTACAGTCGCAAGTCCCAAGAGCATGAATTATTATGA GAGTCATTTTTTGTATCGAGTCGAAATGCAACCGTAGATACTTTTTCACC AGAAAAAAGCAGTATGACAGTTCGCAGACCTCGCGTTCGGCTTGCTCTTT CTTTGGGCAGCACCAATAAACGTTGCCTTAAGCTTCACTTCAAGTAATAA TCACGTTAACGGACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6359:6324..12188+

>mRNA_H-paniculata_contig6359.14158.1 ID=mRNA_H-paniculata_contig6359.14158.1|Name=mRNA_H-paniculata_contig6359.14158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4116bp|location=Sequence derived from alignment at H-paniculata_contig6359:6324..12188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTACGGGGCCTCGATGAACCAGAGATGGTACGGGGCCTCGATGAACC
AGAGAAAGACCCATCTTTGTTCCCGGAAAGTAGGGTACGGCCGTGGGTAC
TTGACGACGCGGCAGAGCTCAAGAAAGACCCATCTTTGTTCCCGGAAAGT
AGGGTACGGCCGTGGGTACTTGACGACGCGGCAGAGCTCAAGGTTCAGGA
TATGCGCGATGAATTCGAGAAAACTTTGACTTTCGTATCGCCAGTGAAGG
AGGGGTTGGAGAAGAGTCTTCTCGATCGAATGGTTCCCGAGGACAAGCGA
TGTCACATGTTCCTCGAAGAGCTGGCGCGTCTTAAAGTCGACAGAGCAGC
TGCGGATCGGCGAAAAGCTTCTGGAAAGTGGGTTATTCAACCGATTGGAG
AGGTTCAGGATATGCGCGATGAATTCGAGAAAACTTTGACTTTCGTATCG
CCAGTGAAGGAGGGGTTGGAGAAGAGTCTTCTCGATCGAATGGTTCCCGA
GGACAAGCGATGTCACATGTTCCTCGAAGAGCTGGCGCGTCTTAAAGTCG
ACAGAGCAGCTGCGGATCGGCGAAAAGCTTCTGGAAAGTGGGTTATTCAA
CCGATTGGAGAGGTCTTCGAGGACCTGTCCAGAGAGACGCATGGTCTGTC
TCCAAAAGCAAAACAGAAGTCTGTGATTGACTGCAGTACGGAGGGGCTCA
GGAGCGAGGAAAGTATACGCGCAACGGATGAGGGAAACTCAGAACTGGAA
CAGGAGAGGCAGGATGTCGAGACCATGGAAATAGGAGGGCACGGTGGACT
AGCCGAGGATTCAGATGTCGCACGCCTGGTGGATTTGCTGCACAAAGTTG
ACTCTGAGTTTTGCACCAGTAGTGAAGCTGGTTCTGAGATCGGCAGCAGT
CAGAATAGCCACGATAGTGGTACCGAGAGTAGAGTCGAGGAAGAAACTGA
CGAGCGTGGCCAATGCGCCGATGGTCGAAACGGAGGGGGTGTTGGACGAT
GTGAGCTTGGCGATCTAGAACACGATGCAGCAGATGAGGGACTCGTTTCG
GGGGATGCCGCAAATAGTCAATCCAATGGGCGAGAAAGGAACGCGGGCGG
AAGTCGAAGTACAGAGGGCAGGCAAGCTATCAAGAATCAACAAGAAGAAC
CATCGCGCATACAACAAACCGACGCGCAGCATCTCACACAGCAGCAACAG
CAACAGCAGCAGCCACACGGGAGAATAGATATTAGCAGAATGAAAATCGA
CGGAACAGAGCGAGGGAAAGTTGTGGGTCCTCGACCGCGCTCAGCGCCAT
CAACATGCCTTTCTGCGGGAGGCTTTTCGCAGCTGTCTCGCACGTCCTCA
TCGCACCTCGCGCGTACAGTTAGCCAAAAGCTACTCCAGGCGGAGAGGGA
AGTCGCACAACTCAAGAGTTTGGACGCAAAGGAAGTAGTGCCCGCACCAC
CTTTGTTAGCGATTGCGGAACCTGGAGTCGGGATTGACACCGTGAAGCAA
AACGCGGACGCGCTTCAGGTCTTCGAGGACCTGTCCAGAGAGACGCATGG
TCTGTCTCCAAAAGCAAAACAGAAGTCTGTGATTGACTGCAGTACGGAGG
GGCTCAGGAGCGAGGAAAGTATACGCGCAACGGATGAGGGAAACTCAGAA
CTGGAACAGGAGAGGCAGGATGTCGAGACCATGGAAATAGGAGGGCACGG
TGGACTAGCCGAGGATTCAGATGTCGCACGCCTGGTGGATTTGCTGCACA
AAGTTGACTCTGAGTTTTGCACCAGTAGTGAAGCTGGTTCTGAGATCGGC
AGCAGTCAGAATAGCCACGATAGTGGTACCGAGAGTAGAGTCGAGGAAGA
AACTGACGAGCGTGGCCAATGCGCCGATGGTCGAAACGGAGGGGGTGTTG
GACGATGTGAGCTTGGCGATCTAGAACACGATGCAGCAGATGAGGGACTC
GTTTCGGGGGATGCCGCAAATAGTCAATCCAATGGGCGAGAAAGGAACGC
GGGCGGAAGTCGAAGTACAGAGGGCAGGCAAGCTATCAAGAATCAACAAG
AAGAACCATCGCGCATACAACAAACCGACGCGCAGCATCTCACACAGCAG
CAACAGCAACAGCAGCAGCCACACGGGAGAATAGATATTAGCAGAATGAA
AATCGACGGAACAGAGCGAGGGAAAGTTGTGGGTCCTCGACCGCGCTCAG
CGCCATCAACATGCCTTTCTGCGGGAGGCTTTTCGCAGCTGTCTCGCACG
TCCTCATCGCACCTCGCGCGTACAGTTAGCCAAAAGCTACTCCAGGCGGA
GAGGGAAGTCGCACAACTCAAGAGTTTGGACGCAAAGGAAGTAGTGCCCG
CACCACCTTTGTTAGCGATTGCGGAACCTGGAGTCGGGATTGACACCGTG
AAGCAAAACGCGGACGCGCTTCAGGCGAGCAAGGCAGTGAAGCGAACGAG
CTACCTAAAGGGCTACCGCCCACGAACTACCAAGTGGCCTGCGCGTGACA
CCGATGCACAGGACGTATCGGATGCTGGCCGCAAGGGGGTTAGTTCCATG
TTGTATTCGTTGTCCGTCGAAAACGAAGGTTCTGCTGTTACCAGGAAACA
GCGATCAATCACAGCGGGCAACCGACGGAGGAATCGGACCCGCCTGGTAG
TCGTCGGTGGCTCTAGAAGTACCACGTTGCTCACTCGAACAGAGCGAGAT
TTTGTCTTTGGAAAAACCGCATCAGCAGTAGTTCCAGCGACCTCTGCGGC
GACGGGTGCTGACGGAATCCAGCCCACGTCGTATCGGCCACCCTCAGCCC
GGTACACGACCCCGGGGAAGATGCTTGGGCATGTTGCTCCGGCAGCAGAT
GCGACAACGTCCCGGCGACGATATCAAACCCGAAAACCAGGATATGATTG
CAGTGCCAACTCTCGCGTGGGAGGCAGGCGAGCGTGCAGCAGTTCTCTCG
GTGGAAGCGTCATGCCGAAACATGTTAACAGTAGGAGAGGTGGAAAGATG
GTGAGGACAAGACCCACGAGTGCCGTGCCCAGCGACCAAGGGAGGTCTTC
TGTAGCCTTCACCACGTCCCCCTCGAGAGAAGCAAAGTCGTCTAGGAGTA
CAGAAAAACGTGCGTCGCAGCCCTTGGGCAGTCGAGAGGAATCTTTTAGG
TCTAGTGGATGCCCATGGATCGAGAATGTGGTGCAGAGCGGCACAACCTT
GGTGGATCCTTCTCCGGCCCCTGATGTCTTGGTTGAGGAGCGGTCAGGCG
AGCAAGGCAGTGAAGCGAACGAGCTACCTAAAGGGCTACCGCCCACGAAC
TACCAAGTGGCCTGCGCGTGACACCGATGCACAGGACGTATCGGATGCTG
GCCGCAAGGGGGTTAGTTCCATGTTGTATTCGTTGTCCGTCGAAAACGAA
GGTTCTGCTGTTACCAGGAAACAGCGATCAATCACAGCGGGCAACCGACG
GAGGAATCGGACCCGCCTGGTAGTCGTCGGTGGCTCTAGAAGTACCACGT
TGCTCACTCGAACAGAGCGAGATTTTGTCTTTGGAAAAACCGCATCAGCA
GTAGTTCCAGCGACCTCTGCGGCGACGGGTGCTGACGGAATCCAGCCCAC
GTCGTATCGGCCACCCTCAGCCCGGTACACGACCCCGGGGAAGATGCTTG
GGCATGTTGCTCCGGCAGCAGATGCGACAACGTCCCGGCGACGATATCAA
ACCCGAAAACCAGGATATGATTGCAGTGCCAACTCTCGCGTGGGAGGCAG
GCGAGCGTGCAGCAGTTCTCTCGGTGGAAGCGTCATGCCGAAACATGTTA
ACAGTAGGAGAGGTGGAAAGATGGTGAGGACAAGACCCACGAGTGCCGTG
CCCAGCGACCAAGGGAGGTCTTCTGTAGCCTTCACCACGTCCCCCTCGAG
AGAAGCAAAGTCGTCTAGGAGTACAGAAAAACGTGCGTCGCAGCCCTTGG
GCAGTCGAGAGGAATCTTTTAGGTCTAGTGGATGCCCATGGATCGAGAAT
GTGGTGCAGAGCGGCACAACCTTGGTGGATCCTTCTCCGGCCCCTGATGT
CTTGGTTGAGGAGCGGTCAGGTCATGTCGAAGAAGCGGATTAAGTCATGT
CGAAGAAGCGGATTAA
back to top