mRNA_H-paniculata_contig6358.14156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6358.14156.1
Unique NamemRNA_H-paniculata_contig6358.14156.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6358.14156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6358contigH-paniculata_contig6358:11588..12213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930734.3337998-UTR-H-paniculata_contig6358:11587..117751622930734.3337998-UTR-H-paniculata_contig6358:11587..11775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6358 11588..11775 +
1691481428.2882125-UTR-H-paniculata_contig6358:11587..117751691481428.2882125-UTR-H-paniculata_contig6358:11587..11775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6358 11588..11775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930734.3519354-CDS-H-paniculata_contig6358:11775..122131622930734.3519354-CDS-H-paniculata_contig6358:11775..12213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6358 11776..12213 +
1691481428.296608-CDS-H-paniculata_contig6358:11775..122131691481428.296608-CDS-H-paniculata_contig6358:11775..12213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6358 11776..12213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6358.14156.1prot_H-paniculata_contig6358.14156.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6358 11776..12213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6358.14156.1

>prot_H-paniculata_contig6358.14156.1 ID=prot_H-paniculata_contig6358.14156.1|Name=mRNA_H-paniculata_contig6358.14156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MFRKKTLAPQLHNKLQSGFDLMSDNTAEGASSTTSSRPNDATGNRASASS
HSRHDSSAGTSGTPLGPADSATGGPSSPVADPKAGEAIDEMEAGRRVGAR
ARGKRKEYPQPGFRWTGWGGNAKGNYSVLKKLKAVESSQTICPDGL
back to top

mRNA from alignment at H-paniculata_contig6358:11588..12213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6358.14156.1 ID=mRNA_H-paniculata_contig6358.14156.1|Name=mRNA_H-paniculata_contig6358.14156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=626bp|location=Sequence derived from alignment at H-paniculata_contig6358:11588..12213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGGCATACGTCATCATGGGTGCAATCACTAAACGAAGAGACGATACCA
GCACATGTTCATCATTGTAATCTTTCATACGGTAACGGTAATGCTGTAAA
TTGCAATGCGCATGCAAAGGTACTTGTAATTTGCTGTGCCCTCTAATCTC
TCCTGTGTGCGGTACAACGATCGCGGGTCTGAACGGAGATGTTTAGAAAA
AAAACCCTAGCTCCACAGCTCCACAACAAGCTACAGAGCGGATTCGACCT
CATGTCCGACAACACTGCAGAGGGCGCAAGCAGCACGACCAGCAGTCGGC
CCAACGATGCGACTGGGAACAGAGCGTCAGCCTCGTCACACTCTAGGCAT
GATTCCAGTGCTGGGACTAGTGGTACGCCGCTGGGACCCGCTGATTCTGC
GACTGGAGGTCCTTCATCACCTGTTGCTGATCCCAAGGCAGGGGAAGCGA
TTGACGAGATGGAAGCGGGTCGACGGGTAGGCGCAAGAGCAAGAGGAAAG
AGGAAAGAGTACCCCCAACCTGGCTTTAGATGGACAGGATGGGGGGGGAA
CGCGAAAGGAAACTACTCAGTACTGAAAAAGCTCAAGGCTGTGGAATCTT
CTCAAACAATTTGCCCTGATGGACTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6358:11588..12213+

>mRNA_H-paniculata_contig6358.14156.1 ID=mRNA_H-paniculata_contig6358.14156.1|Name=mRNA_H-paniculata_contig6358.14156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig6358:11588..12213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTAGAAAAAAAACCCTAGCTCCACAGCTCCACAACAAGCTACAGAG
CGGATTCGACCTCATGTCCGACAACACTGCAGAGGGCGCAAGCAGCACGA
CCAGCAGTCGGCCCAACGATGCGACTGGGAACAGAGCGTCAGCCTCGTCA
CACTCTAGGCATGATTCCAGTGCTGGGACTAGTGGTACGCCGCTGGGACC
CGCTGATTCTGCGACTGGAGGTCCTTCATCACCTGTTGCTGATCCCAAGG
CAGGGGAAGCGATTGACGAGATGGAAGCGGGTCGACGGGTAGGCGCAAGA
GCAAGAGGAAAGAGGAAAGAGTACCCCCAACCTGGCTTTAGATGGACAGG
ATGGGGGGGGAACGCGAAAGGAAACTACTCAGTACTGAAAAAGCTCAAGG
CTGTGGAATCTTCTCAAACAATTTGCCCTGATGGACTCATGTTTAGAAAA
AAAACCCTAGCTCCACAGCTCCACAACAAGCTACAGAGCGGATTCGACCT
CATGTCCGACAACACTGCAGAGGGCGCAAGCAGCACGACCAGCAGTCGGC
CCAACGATGCGACTGGGAACAGAGCGTCAGCCTCGTCACACTCTAGGCAT
GATTCCAGTGCTGGGACTAGTGGTACGCCGCTGGGACCCGCTGATTCTGC
GACTGGAGGTCCTTCATCACCTGTTGCTGATCCCAAGGCAGGGGAAGCGA
TTGACGAGATGGAAGCGGGTCGACGGGTAGGCGCAAGAGCAAGAGGAAAG
AGGAAAGAGTACCCCCAACCTGGCTTTAGATGGACAGGATGGGGGGGGAA
CGCGAAAGGAAACTACTCAGTACTGAAAAAGCTCAAGGCTGTGGAATCTT
CTCAAACAATTTGCCCTGATGGACTC
back to top