mRNA_H-paniculata_contig63334.14127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63334.14127.1
Unique NamemRNA_H-paniculata_contig63334.14127.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig63334.14127.1 vs. uniprot
Match: A0A165M5Y1_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165M5Y1_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 1.300e-5
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   19 HWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVAGWGHLVLLGSQLGGESR--VAMLNRVARVPELGRNLISTRLATDTSG 279
            +WN+DTGAT HMT     F  Y+P +      + N T +  AG G ++     + GES+  V +L+ V  VP+LG NL+S    T T G
Sbjct:   62 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLTNDTIIYTAGMGSVMF--ELVLGESKAPVVVLHNVLHVPQLGSNLLSVYHLTKTKG 146
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BLAST of mRNA_H-paniculata_contig63334.14127.1 vs. uniprot
Match: A0A165MYY0_9AGAM (Uncharacterized protein (Fragment) n=10 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165MYY0_9AGAM)

HSP 1 Score: 52.0 bits (123), Expect = 1.650e-5
Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:   19 HWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVAGWGHLVLLGSQLGGESR--VAMLNRVARVPELGRNLISTRLATDTSG 279
            +WN+DTGAT HMT     F  Y+P +      +AN T +  AG G ++     + GES+  V +L+ V  VP+LG NL+S    T T G
Sbjct:   99 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLANDTSIYTAGMGSVMF--EPVLGESKAPVVVLHDVLHVPQLGSNLLSVYHLTKTKG 183
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BLAST of mRNA_H-paniculata_contig63334.14127.1 vs. uniprot
Match: K0T2L0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2L0_THAOC)

HSP 1 Score: 52.4 bits (124), Expect = 3.040e-5
Identity = 40/99 (40.40%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:   28 SDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVAGWGHLVLLGSQLGGESRVAMLNRVARVPELGRNLISTRLATDTSGKSFI-YSANKASLRL 321
            +D+GATDHM  D +AF  Y P + G    + N  FVPV G G  V     L G+    M+  V  VP+LGR L S R      G  FI  SA + S R+
Sbjct:  990 ADSGATDHMVPDRSAFYSYRP-VHGLRVRMGNNAFVPVVGRGTAVF---SLNGKH--VMIRNVMHVPDLGRPLYSLRAHLLQPGCGFIGLSATETSARM 1082
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BLAST of mRNA_H-paniculata_contig63334.14127.1 vs. uniprot
Match: K0R6M9_THAOC (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6M9_THAOC)

HSP 1 Score: 52.4 bits (124), Expect = 3.080e-5
Identity = 40/99 (40.40%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:   28 SDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVAGWGHLVLLGSQLGGESRVAMLNRVARVPELGRNLISTRLATDTSGKSFI-YSANKASLRL 321
            +D+GATDHM  D +AF  Y P + G    + N  FVPV G G  V     L G+    M+  V  VP+LGR L S R      G  FI  SA + S R+
Sbjct:  216 ADSGATDHMVPDRSAFYSYRP-VHGLRVRMGNNAFVPVVGRGTAVF---SLNGKH--VMIRNVMHVPDLGRPLYSLRAHLLQPGCGFIGLSATETSARM 308
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BLAST of mRNA_H-paniculata_contig63334.14127.1 vs. uniprot
Match: K0S446_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S446_THAOC)

HSP 1 Score: 50.8 bits (120), Expect = 9.270e-5
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:   28 SDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVAGWGHLVLLGSQLGGESRVAMLNRVARVPELGRNLISTRLATDTSGKSFI-YSANKASLRL 321
            +D+GATDHM  D +AF  Y P + G    + N  FVPV G G  V     L G+    M+     VP+LGR L S R      G  FI  SA + S R+
Sbjct:  125 ADSGATDHMVPDRSAFYSYRP-VHGLRVRMGNNAFVPVVGRGTAVF---SLNGKH--VMIRNAMHVPDLGRPLYSLRAHLLQPGCGFIGLSATETSARM 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63334.14127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A165M5Y1_9AGAM1.300e-538.20Uncharacterized protein (Fragment) n=1 Tax=Neolent... [more]
A0A165MYY0_9AGAM1.650e-539.33Uncharacterized protein (Fragment) n=10 Tax=Neolen... [more]
K0T2L0_THAOC3.040e-540.40Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0R6M9_THAOC3.080e-540.40Integrase catalytic domain-containing protein (Fra... [more]
K0S446_THAOC9.270e-539.39Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63334contigH-paniculata_contig63334:334..720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930730.4365396-CDS-H-paniculata_contig63334:333..7201622930730.4365396-CDS-H-paniculata_contig63334:333..720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63334 334..720 +
1691481426.644925-CDS-H-paniculata_contig63334:333..7201691481426.644925-CDS-H-paniculata_contig63334:333..720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63334 334..720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63334.14127.1prot_H-paniculata_contig63334.14127.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63334 334..720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63334.14127.1

>prot_H-paniculata_contig63334.14127.1 ID=prot_H-paniculata_contig63334.14127.1|Name=mRNA_H-paniculata_contig63334.14127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MTREKEHWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVAGW
GHLVLLGSQLGGESRVAMLNRVARVPELGRNLISTRLATDTSGKSFIYSA
NKASLRLGEKESLIFNVSPPSGLYEMEAV
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mRNA from alignment at H-paniculata_contig63334:334..720+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63334.14127.1 ID=mRNA_H-paniculata_contig63334.14127.1|Name=mRNA_H-paniculata_contig63334.14127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig63334:334..720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGAGAGAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCA
CATGACGTCGGATGAAACTGCATTCGAGGACTACACTCCAGCGCTCCCGG
GGACCATGTGTGAAATCGCCAACGGGACATTCGTACCGGTGGCGGGGTGG
GGACACCTTGTGCTTCTAGGAAGTCAACTGGGGGGGGAATCACGGGTAGC
AATGTTAAACAGGGTTGCCCGCGTACCTGAGCTCGGGCGCAATTTAATCT
CCACACGCCTAGCAACAGATACTTCGGGTAAATCGTTCATATACAGTGCC
AACAAAGCAAGCCTCAGGCTAGGGGAGAAGGAGAGCCTTATCTTCAACGT
GTCACCACCTTCAGGACTGTATGAGATGGAGGCCGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig63334:334..720+

>mRNA_H-paniculata_contig63334.14127.1 ID=mRNA_H-paniculata_contig63334.14127.1|Name=mRNA_H-paniculata_contig63334.14127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig63334:334..720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGAGAGAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCA
CATGACGTCGGATGAAACTGCATTCGAGGACTACACTCCAGCGCTCCCGG
GGACCATGTGTGAAATCGCCAACGGGACATTCGTACCGGTGGCGGGGTGG
GGACACCTTGTGCTTCTAGGAAGTCAACTGGGGGGGGAATCACGGGTAGC
AATGTTAAACAGGGTTGCCCGCGTACCTGAGCTCGGGCGCAATTTAATCT
CCACACGCCTAGCAACAGATACTTCGGGTAAATCGTTCATATACAGTGCC
AACAAAGCAAGCCTCAGGCTAGGGGAGAAGGAGAGCCTTATCTTCAACGT
GTCACCACCTTCAGGACTGTATGAGATGGAGGCCGTTATGACCAGAGAGA
AGGAACACTGGAACTCAGACACCGGCGCGACAGACCACATGACGTCGGAT
GAAACTGCATTCGAGGACTACACTCCAGCGCTCCCGGGGACCATGTGTGA
AATCGCCAACGGGACATTCGTACCGGTGGCGGGGTGGGGACACCTTGTGC
TTCTAGGAAGTCAACTGGGGGGGGAATCACGGGTAGCAATGTTAAACAGG
GTTGCCCGCGTACCTGAGCTCGGGCGCAATTTAATCTCCACACGCCTAGC
AACAGATACTTCGGGTAAATCGTTCATATACAGTGCCAACAAAGCAAGCC
TCAGGCTAGGGGAGAAGGAGAGCCTTATCTTCAACGTGTCACCACCTTCA
GGACTGTATGAGATGGAGGCCGTT
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