mRNA_H-paniculata_contig6324.14117.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6324.14117.1
Unique NamemRNA_H-paniculata_contig6324.14117.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6324.14117.1 vs. uniprot
Match: D8LQC5_ECTSI (Similar to oral cancer overexpressed 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC5_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 7.170e-61
Identity = 101/136 (74.26%), Postives = 117/136 (86.03%), Query Frame = 2 
Query:  455 VMFDDVVLLDDRLVAEGKNAGREDGRAQGFKEXXXXXXXKGFRTAAEMGFCRGCCLSWLALNDENPDTFPFSEKALTSMRAVAKLAEAVPRENTRDADAAQIAQRVRARFRAVTSMIGLPVVFDSKEQAEVKDLSF 862
            +MFDD+VLLDDR+VAEGK+AGREDGRA+GFKE       KGF+TAAEM FCRGCCL+WL+++ ++PD FPFSEKAL SMRAV  LAE+VPR NT++A AAQ AQRVRARFRAVTSM+GLPVVFDSK QAE KD SF
Sbjct:    1 MMFDDIVLLDDRMVAEGKDAGREDGRARGFKEGEGMGRGKGFQTAAEMSFCRGCCLAWLSMHAQDPDKFPFSEKALASMRAVVTLAESVPRVNTQEATAAQTAQRVRARFRAVTSMVGLPVVFDSKGQAEAKDFSF 136
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BLAST of mRNA_H-paniculata_contig6324.14117.1 vs. uniprot
Match: A0A261XY51_9FUNG (Yae1_N domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XY51_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 1.030e-7
Identity = 33/126 (26.19%), Postives = 66/126 (52.38%), Query Frame = 2 
Query:  461 FDDVVLLDDRLVAEGKNAGREDGRAQGFKEXXXXXXXKGFRTAAEMGFCRGCCLSWLALNDENPDTFPFSEKALTSMRAVAKLAEAVPRENTRDADAAQIAQRVRARFRAVTSMIGLPVVFDSKEQ 838
             D +V L+   +  G   G + G   G  E       K F  + E+G+  GC  +W+ L  ++PD F  S++ L   +++  L + +P EN  + +   + +RVRA+F+ +TS++G+   +++ ++
Sbjct:   10 LDALVNLETMFMEYGYEDGMKAGELSGALEGRVLGCEKAFEISRELGYYYGCASTWIMLFQKSPDKF--SDRLLKQAQSLQTLIDEIPMENQVNTEILLLVERVRAKFKVLTSILGVSQKYNAMDK 133
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BLAST of mRNA_H-paniculata_contig6324.14117.1 vs. uniprot
Match: A0A8H7U9A6_9FUNG (Yae1_N domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7U9A6_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 1.730e-6
Identity = 31/115 (26.96%), Postives = 58/115 (50.43%), Query Frame = 2 
Query:  461 FDDVVLLDDRLVAEGKNAGREDGRAQGFKEXXXXXXXKGFRTAAEMGFCRGCCLSWLALNDENPDTFPFSEKALTSMRAVAKLAEAVPRENTRDADAAQIAQRVRARFRAVTSMI 805
             ++++ L++     G   G  DGR  G  E       KGF  + E+G+  GC + W  L + +P++F  S +A   ++++  + +  P  N    D   +  ++RA+FR VTS++
Sbjct:   12 LENLIHLENMFQELGHEDGLRDGRKSGVVEGRILGCEKGFEMSNEVGYYTGCAILWTKLVEAHPESF--SSRATKQIQSLQSVIDQFPDANEDQTDTFALLDKMRAKFRVVTSVL 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6324.14117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQC5_ECTSI7.170e-6174.26Similar to oral cancer overexpressed 1 n=2 Tax=Ect... [more]
A0A261XY51_9FUNG1.030e-726.19Yae1_N domain-containing protein n=1 Tax=Bifigurat... [more]
A0A8H7U9A6_9FUNG1.730e-626.96Yae1_N domain-containing protein n=1 Tax=Umbelopsi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6324contigH-paniculata_contig6324:3381..5965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved unknown protein
Ec32 orthologEc-10_005120.1
Exons3
Model size1457
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6324.14117.1prot_H-paniculata_contig6324.14117.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6324 3838..5373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930729.1136007-UTR-H-paniculata_contig6324:3380..38371622930729.1136007-UTR-H-paniculata_contig6324:3380..3837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6324 3381..3837 +
1691481426.0103312-UTR-H-paniculata_contig6324:3380..38371691481426.0103312-UTR-H-paniculata_contig6324:3380..3837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6324 3381..3837 +
1622930729.2618792-UTR-H-paniculata_contig6324:5373..59651622930729.2618792-UTR-H-paniculata_contig6324:5373..5965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6324 5374..5965 +
1691481426.0491657-UTR-H-paniculata_contig6324:5373..59651691481426.0491657-UTR-H-paniculata_contig6324:5373..5965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6324 5374..5965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930729.1280136-CDS-H-paniculata_contig6324:3837..40331622930729.1280136-CDS-H-paniculata_contig6324:3837..4033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6324 3838..4033 +
1691481426.0211165-CDS-H-paniculata_contig6324:3837..40331691481426.0211165-CDS-H-paniculata_contig6324:3837..4033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6324 3838..4033 +
1622930729.1430595-CDS-H-paniculata_contig6324:4630..48151622930729.1430595-CDS-H-paniculata_contig6324:4630..4815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6324 4631..4815 +
1691481426.030373-CDS-H-paniculata_contig6324:4630..48151691481426.030373-CDS-H-paniculata_contig6324:4630..4815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6324 4631..4815 +
1622930729.2511103-CDS-H-paniculata_contig6324:5346..53731622930729.2511103-CDS-H-paniculata_contig6324:5346..5373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6324 5347..5373 +
1691481426.0393515-CDS-H-paniculata_contig6324:5346..53731691481426.0393515-CDS-H-paniculata_contig6324:5346..5373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6324 5347..5373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6324.14117.1

>prot_H-paniculata_contig6324.14117.1 ID=prot_H-paniculata_contig6324.14117.1|Name=mRNA_H-paniculata_contig6324.14117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MFDDVVLLDDRLVAEGKNAGREDGRAQGFKEGEGMGQGKGFRTAAEMGFC
RGCCLSWLALNDENPDTFPFSEKALTSMRAVAKLAEAVPRENTRDADAAQ
IAQRVRARFRAVTSMIGLPVVFDSKEQAEVKDLSF*
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mRNA from alignment at H-paniculata_contig6324:3381..5965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6324.14117.1 ID=mRNA_H-paniculata_contig6324.14117.1|Name=mRNA_H-paniculata_contig6324.14117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2585bp|location=Sequence derived from alignment at H-paniculata_contig6324:3381..5965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCGAGCAACCGAAAGCGATTCCCTTAGGAATAATGTGTCTGAGTCATG
AACTACCTCGTGCGGTAGAACTTTGGCCAATAAAATAATAGGTCCGTTGA
AGCCAATGCTCCACACACCACGCTCCTCGGGCTCTTCTTGTGGAACTAGC
AAGACCTCGGGCAAAGCCGGGGGCTGGCAGTACAGCTGATTTGGCACAAA
GATTTTGTGGTTCTCATTATAACAAGTGAAAAACTACAATTTTGAAGCAA
CGAACATCCAACCTCCTTCAGTACTCTAAAGGTTCAAATACAGCCCGTGC
AGACTGTCAGTACTGTAGCACAAGTATCATCGCACGATCTCACTCAGCAA
ACCGGAGGCTGTGCAGTATATGCGCTACCGTCACCAGTGCGCCACGCTTA
GCAGAGCCTCATCCATCAGAACCCGGAACAGGATTCCCTAGAACTGATTC
CTGCGTAATGTTCGATGACGTTGTGCTGCTAGATGATCGGCTTGTCGCGG
AGGGCAAGAACGCTGGCCGTGAGGACGGTAGAGCGCAAGGGTTCAAGGAA
GGGGAAGGCATGGGACAGGGCAAAGGATTTCGGACTGCGGCTGAGATGGG
CTTTTGCAGAGGATGCTGCCTGTCATGGCTAGCCTTAAACGATGAGAACC
CAGGTACGGAAAAGGTTCAGTTACGGGTCTCTTGTATGGGTGTGTGGAAT
TGGATTTGTCTGTACTCACGATGTGGGTACATCACACTGGTTGGACAAAG
CTACCCCATAACTTCTTTTGCGAATACACGCAGTCACCACGGTGCACCGC
CAGGGCTGAGCTTGTACAAGAGCTATCTCTGTCGCATTGCTGGAGCCGCA
CCAATATTCTATCCAGACGAAGAACCCGAGCAAGGCTTTTTGTCGGTAAA
CCCTTCCCGCACCCATTTCAAAACACCATGCTAGCCAAAATTGTTTCATG
ACGAAGGTACACAGGATTTAGACGTCAATAATGATAACAGTGTTTTTCGC
AACACAATCGACGGTCGGTTACCTTCAGTACATGTTGTGTTGTCTGTCCT
GTTATGAACGTTATGTTGTGGAGCTGACGTTCAGTGGGTCACTTTCTTAC
TCGTCAATTTTTTTTCATTTCCAAGATGACGGGAGTGGTTATGCTCTCCG
CCCCAATCGTCATCATATCATCTGCTGACTCGTATCGGCCGCGTGTGCTA
CCACAACATACCGCCGCCTCCGCCCTTGGTGCATCTCAACGCCAACAAAG
ACACATTTCCGTTCAGCGAGAAGGCGCTGACATCGATGCGTGCCGTAGCG
AAACTGGCAGAGGCCGTTCCGCGAGAGAACACGCGAGATGCCGACGCCGC
CCAAATCGCCCAGCGAGTGCGAGCAAGATTTAGGGCTGTTACATCAATGA
TTGGTCTACCGGTCGTATTTGACTCCAAAGAACAGGTGCGATTGACTTGA
TCTCAGCCGTCATCTTTTAGTCCGGCTTGTGTCGAGAGGGTTGCAATAAG
TGCCCCTATCGTGAACCTACGCGCATAAACAAAAGTAGAGACGATGAAAA
AGATTGTGTGCTCAAGCAATACCCAAGTCAGCGCCGAGTGCAACACACGG
ATCTTTGGTTGCTCCTAGTGTTGAGGGTGTTCGCATCGCAGCGAGACCCG
AGCACCAGGGGTCCAGCAACCTTGATACGTTTTCGGAAGGGTCGACTCTT
CCCCTTGCGGTTTGCTTTATAGGTGGTCGTACTCGTCGTCATTTGCGGAT
TGAAAACGTTGTTTTTAATCGAAGGCGTCGTTCGCGTGTTATCTTCCGCC
TTTCCTACTGACTCGTTTTGCAAGAGCAACTCGTGGCTCCGAAGACGCTG
CCAAGCTCACCCTGTTCACTCGTTAATTCAACAGAAAGTAATGCTACAAC
TGCGCCCTTATGACCATTGCGCCCTCATGACTGTTTTCCATGTTCCTCGC
ACTGCGTTTGGAGAAGGCGGAGGTTAAGGACTTATCCTTTTGAGAGGAAG
AACGGCAGAGTATTGTCGATGCAGCTGGCGGATCTCGTCATTGTAGTCCA
CTAGCCAGGAGTAGGCAATTATTCGGGAATGGAGAGTCGTTAAGTTTGTA
CGTAGCCGCAGGTCGTAAACATCATAACTCGAGCCTATTGAGAGTAGTAG
TTCTACTGCTTGCGAGATTGAGCACGTGAGCGTCTCACACAGCGCCTAGC
CGAGTGGGGCGTCGTTTGAGGAGCACGTGCTGCCTCCGGCTTGTTCATTC
TTAACGGGCCGAATCTTGTAGAGATCGGAGGTATATGTGTGGTTGCCCGA
TTATCGCGATTGTTTTTCAGGAGAGGGGAACTCAATTGGGCATGACCCCT
CATGTCTGTCTACCCGAATTGCGTGCCGTGGGCACAAAATGTTGAGTTCA
AGTGATGAAAATTGAATGTTGAAATGGCTAAGTTTAGTTTTTACGACTAA
GTACGACTAAACAAGGCTTGAATCCGCAACTGTTACACGCCAAGGAGCCA
TCGCACAGTAAACTCTTCACGTGGCTAAGTTTAGTTTTTACGACTAAGTA
CGACTAAACAAGGCTTGAATCCGCAACTGTTACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig6324:3381..5965+

>mRNA_H-paniculata_contig6324.14117.1 ID=mRNA_H-paniculata_contig6324.14117.1|Name=mRNA_H-paniculata_contig6324.14117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig6324:3381..5965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGATGACGTTGTGCTGCTAGATGATCGGCTTGTCGCGGAGGGCAA
GAACGCTGGCCGTGAGGACGGTAGAGCGCAAGGGTTCAAGGAAGGGGAAG
GCATGGGACAGGGCAAAGGATTTCGGACTGCGGCTGAGATGGGCTTTTGC
AGAGGATGCTGCCTGTCATGGCTAGCCTTAAACGATGAGAACCCAGATGT
TCGATGACGTTGTGCTGCTAGATGATCGGCTTGTCGCGGAGGGCAAGAAC
GCTGGCCGTGAGGACGGTAGAGCGCAAGGGTTCAAGGAAGGGGAAGGCAT
GGGACAGGGCAAAGGATTTCGGACTGCGGCTGAGATGGGCTTTTGCAGAG
GATGCTGCCTGTCATGGCTAGCCTTAAACGATGAGAACCCAGACACATTT
CCGTTCAGCGAGAAGGCGCTGACATCGATGCGTGCCGTAGCGAAACTGGC
AGAGGCCGTTCCGCGAGAGAACACGCGAGATGCCGACGCCGCCCAAATCG
CCCAGCGAGTGCGAGCAAGATTTAGGGCTGTTACATCAATGATTGGTCTA
CCGGTCGTATTTGACTCCAAAGAACAGACACATTTCCGTTCAGCGAGAAG
GCGCTGACATCGATGCGTGCCGTAGCGAAACTGGCAGAGGCCGTTCCGCG
AGAGAACACGCGAGATGCCGACGCCGCCCAAATCGCCCAGCGAGTGCGAG
CAAGATTTAGGGCTGTTACATCAATGATTGGTCTACCGGTCGTATTTGAC
TCCAAAGAACAGGCGGAGGTTAAGGACTTATCCTTTTGAGCGGAGGTTAA
GGACTTATCCTTTTGA
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