mRNA_H-paniculata_contig6298.14071.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: D8LDB9_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB9_ECTSI) HSP 1 Score: 269 bits (687), Expect = 6.850e-74 Identity = 148/300 (49.33%), Postives = 203/300 (67.67%), Query Frame = 2
Query: 1742 PSRAKVIISPMEKNFIRSLEKIDGA----ESHLPPLLGKSPQQQRFGSLA-SPYMADKDSEH--SPSCAVPLGLKKTLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEPPPASRMVDNDD---DNSLDCDFESEVGMEEAKPRF-------KQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDE--LLIATTFLHKMARVPDVRTPLIKAFDLHQQVHGVR 2584
PS+ V + +EK FIRSL +ID + + PLL P+ + FG++A +P +A D VP+G KKTLVLDLDETLVSS+RTPC CD++++FKIH E AS +N N+ D + G++ A + ++I YYV+LRPGL++FL A++YELVVWTASG++YADAI++LLDP ++F++R YRDSC+RH LCVKDLRRLGRPM++V+LLDN+VYSFG TL+NG PI+PWTG + + L A + L ++R PDVR PL+ AFDL +++HG R
Sbjct: 293 PSKQNVGVPDLEKAFIRSLAEIDADAKAYNNRVRPLLAHIPRPRLFGAVAPAPGVARSDDGGFGGSKKLVPMGHKKTLVLDLDETLVSSSRTPCDCDYKVVFKIHSREK--ASNNQENTPFFAANADAPDANNSDGIQHAGGYYGGDDDIVQEIVYYVQLRPGLARFLEKVAAIYELVVWTASGRSYADAIIDLLDPAGDIFAERFYRDSCLRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTGAKEAKNSGLTTAYSLLRGISRFPDVRVPLVTAFDLQRKIHGYR 590
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: A0A6H5JK84_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK84_9PHAE) HSP 1 Score: 270 bits (690), Expect = 4.520e-72 Identity = 150/305 (49.18%), Postives = 204/305 (66.89%), Query Frame = 2
Query: 1745 SRAKVIISPMEKNFIRSLEKIDGA----ESHLPPLLGKSPQQQRFGSLA-SPYMADKDSEHSPSC--AVPLGLKKTLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEP--------PPASRMVDNDDDNSLDCDFESEVGMEEAKPRF-------KQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDE--LLIATTFLHKMARVPDVRTPLIKAFDLHQQVHGVRS 2587
S+ V + +EK FIRSL +ID + + PLL P+ + FG++A +P +A D S VP+G KKTLVLDLDETLVSS+RTPC CD++++FKIH E P + D D NS + S G++ A + ++I YYV+LRPGL++FL A++YELVVWTASG++YADAI++LLDP ++F++R YRDSC+RH LCVKDLRRLGRPM++V+LLDN+VYSFG TL+NG PI+PWTG + + L A + L ++R PDVR PL+ AFDL +++HG RS
Sbjct: 332 SKQNVGVPDLEKAFIRSLAEIDADAKAYNNRVRPLLAHIPRPRLFGAVAPAPGVARNDGIGSCGSKKVVPMGHKKTLVLDLDETLVSSSRTPCDCDYKVVFKIHSREKASNNQENTPFFAANADAPDANSAAAN--SSEGIQHAGGYYGRDDDIVQEIVYYVQLRPGLARFLEKVAAIYELVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCLRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTGAKEAKNSGLTTAYSLLRGISRFPDVRVPLVTAFDLQRKIHGYRS 634
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: UPI001929D8D8 (CTD small phosphatase-like protein 2 isoform X1 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929D8D8) HSP 1 Score: 137 bits (345), Expect = 2.420e-31 Identity = 79/208 (37.98%), Postives = 109/208 (52.40%), Query Frame = 2
Query: 1949 TLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEPPPASRMVDNDDDNSLDCDFESEVGMEEAKPRFKQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDELLIATTFLHKMARVPDVRTPLIKAFDLHQQV 2572
TLVLDLDETLV S+ PC D DF V K+ + YVR RP L F+ AS++E++++TAS YA+ +LN+LDP LF R+YR+SCV G +KDL LGR +S V+++DN +FGF ++NG PI W + EL++ FL + V DVR + K F+L Q+V
Sbjct: 170 TLVLDLDETLVHSSLEPCE-----------------------------DADFTFPVNF-----NLKEHTVYVRCRPHLRDFMERVASLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVIIIDNSPQAFGFQIDNGIPIESWFEDRSDQELILLLPFLESLVGVEDVRPLIAKKFNLRQKV 343
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: A0A453MHW4_AEGTS (FCP1 homology domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MHW4_AEGTS) HSP 1 Score: 134 bits (338), Expect = 5.240e-31 Identity = 81/210 (38.57%), Postives = 107/210 (50.95%), Query Frame = 2
Query: 1943 KKTLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEPPPASRMVDNDDDNSLDCDFESEVGMEEAKPRFKQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDELLIATTFLHKMARVPDVRTPLIKAFDLHQQV 2572
+ TLVLDLDETLV ST PC D F +H + + + YVR RP L FL ASM+E++++TAS YA+ +LN+LDP LF R+YR+SCV G +KDL LGR +S V+++DN +FGF L+NG PI W ELL FL + V DVR + F+L Q+V
Sbjct: 108 RTTLVLDLDETLVHSTLEPCE-DSDFTFPVHFN---------------------------------LRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKELLALLPFLESLVGVEDVRPFIATKFNLRQKV 283
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: A0A5B7BZP0_DAVIN (FCP1 homology domain-containing protein n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5B7BZP0_DAVIN) HSP 1 Score: 137 bits (345), Expect = 1.530e-30 Identity = 78/208 (37.50%), Postives = 111/208 (53.37%), Query Frame = 2
Query: 1949 TLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEPPPASRMVDNDDDNSLDCDFESEVGMEEAKPRFKQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDELLIATTFLHKMARVPDVRTPLIKAFDLHQQV 2572
TLVLDLDETLV ST PC ND D + DF K+ + YVR RP L F+ AS++E++++TAS YA+ +LN+LDP +F R+YR+SCV G +KDL LGR ++ V+++DN +FGF ++NG PI W + ELL+ FL + V DVR + K F+L +++
Sbjct: 261 TLVLDLDETLVHSTLEPC-----------------------NDADFTFPVDF-----------NMKEHTVYVRCRPHLKDFMERVASLFEIIIFTASQSIYAEQLLNVLDPKRRIFRHRVYRESCVFVEGNYLKDLSVLGRDLAHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLLLVPFLEGLVGVEDVRPLIAKKFNLREKI 434
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: A0A7J7M5D9_9MAGN (FCP1 homology domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7M5D9_9MAGN) HSP 1 Score: 137 bits (345), Expect = 2.110e-30 Identity = 84/216 (38.89%), Postives = 111/216 (51.39%), Query Frame = 2
Query: 1949 TLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEPPPASRMVDNDDDNSLDCDFESEVGMEEAKPRFKQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDELLIATTFLHKMARVPDVRTPLIKAFDLHQQVHGVRSSSL 2596
TLVLDLDETLV ST PC D DF V K + YV+ RP L FL AS++E++++TAS YA+ +LN+LDP LF R+YRDSCV G VKDL LGR MS V+++DN +FGF ++NG PI W + +ELL+ FL + V DVR + F+L ++V+ SL
Sbjct: 280 TLVLDLDETLVHSTLEPCD-----------------------------DVDFTFPVNFNLMKH-----TVYVKCRPHLKDFLERVASLFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRDSCVFVDGNYVKDLSILGRDMSRVVIIDNSPQAFGFQVDNGIPIESWFDDRSDEELLLLLPFLESLVGVEDVRPLVANKFNLREKVNSAAYPSL 461
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: UPI0007754D37 (CTD small phosphatase-like protein 2 isoform X2 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI0007754D37) HSP 1 Score: 134 bits (337), Expect = 2.840e-30 Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 2
Query: 1943 KKTLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEPPPASRMVDNDDDNSLDCDFESEVGMEEAKPRFKQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDELLIATTFLHKMARVPDVRTPLIKAFDLHQQV 2572
+ TLVLDLDETLV ST PC D F +H + ++ + YVR RP L +FL ASM+E++++TAS YA+ +LN+LDP LF R+YR+SC+ G +KDL LGR ++ V+++DN +FGF L+NG PI W ELL FL + V DVR + + F+L ++V
Sbjct: 171 RTTLVLDLDETLVHSTLEPCE-DSDFTFPVHFN---------------------------------LREHTIYVRCRPYLKEFLETVASMFEIIIFTASQSIYAEQLLNILDPKRRLFRHRVYRESCLFVEGNYLKDLSVLGRDLARVVIVDNSPQAFGFQLDNGVPIESWFDDRNDRELLTLLPFLQSLVGVEDVRPCIARKFNLREKV 346
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: A0A3B6I284_WHEAT (FCP1 homology domain-containing protein n=22 Tax=Pooideae TaxID=147368 RepID=A0A3B6I284_WHEAT) HSP 1 Score: 134 bits (338), Expect = 6.900e-30 Identity = 81/210 (38.57%), Postives = 107/210 (50.95%), Query Frame = 2
Query: 1943 KKTLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEPPPASRMVDNDDDNSLDCDFESEVGMEEAKPRFKQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDELLIATTFLHKMARVPDVRTPLIKAFDLHQQV 2572
+ TLVLDLDETLV ST PC D F +H + + + YVR RP L FL ASM+E++++TAS YA+ +LN+LDP LF R+YR+SCV G +KDL LGR +S V+++DN +FGF L+NG PI W ELL FL + V DVR + F+L Q+V
Sbjct: 224 RTTLVLDLDETLVHSTLEPCE-DSDFTFPVHFN---------------------------------LRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKELLALLPFLESLVGVEDVRPFIATKFNLRQKV 399
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: A0A1U8Q2P8_NELNU (CTD small phosphatase-like protein 2 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8Q2P8_NELNU) HSP 1 Score: 135 bits (339), Expect = 7.240e-30 Identity = 78/208 (37.50%), Postives = 110/208 (52.88%), Query Frame = 2
Query: 1949 TLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEPPPASRMVDNDDDNSLDCDFESEVGMEEAKPRFKQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDELLIATTFLHKMARVPDVRTPLIKAFDLHQQV 2572
TLVLDLDETLV ST C D DF V FK+ + YVR RP L+ F+ AS++E++++TAS YA+ +LN+LDP +F R+YR+SCV G +KDL LGR ++ V+++DN +FGF ++NG PI W + ELL+ FL + V DVR + K F+L ++V
Sbjct: 258 TLVLDLDETLVHSTLEHCE-----------------------------DADFTFPVNF-----NFKEHTVYVRCRPHLNDFMERVASLFEIIIFTASQSIYAEQLLNMLDPKRRIFRHRVYRESCVFVGGNYLKDLSVLGRDLAQVIIVDNSPQAFGFQVDNGIPIESWFDDRSDHELLLLLPFLESLVGVEDVRPLIAKKFNLREKV 431
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Match: A0A0D9W1E8_9ORYZ (FCP1 homology domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9W1E8_9ORYZ) HSP 1 Score: 134 bits (337), Expect = 1.250e-29 Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 2
Query: 1943 KKTLVLDLDETLVSSTRTPCSCDFQIIFKIHDSEPPPASRMVDNDDDNSLDCDFESEVGMEEAKPRFKQISYYVRLRPGLSKFLADAASMYELVVWTASGQAYADAILNLLDPDNNLFSKRLYRDSCVRHRGLCVKDLRRLGRPMSSVLLLDNFVYSFGFTLNNGFPITPWTGTEASDELLIATTFLHKMARVPDVRTPLIKAFDLHQQV 2572
+ TLVLDLDETLV ST PC D F +H + ++ + YVR RP + +FL ASM+E++++TAS YA+ +LN+LDP LF R+YR+SCV G +KDL LGR ++ V+++DN +FGF L+NG PI W ELL FL + V DVR + + F+L ++V
Sbjct: 249 RTTLVLDLDETLVHSTLEPCE-DSDFTFPVHFN---------------------------------LREHTIYVRCRPYVKEFLDTVASMFEIIIFTASQSIYAEQLLNILDPKRRLFRHRIYRESCVYVEGNYLKDLSVLGRDLARVVIVDNSPQAFGFQLDNGVPIESWFDDPNDRELLTLLPFLESLVGVEDVRPYIARKFNLREKV 424 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6298.14071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6298.14071.1 >prot_H-paniculata_contig6298.14071.1 ID=prot_H-paniculata_contig6298.14071.1|Name=mRNA_H-paniculata_contig6298.14071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=863bp MMQQQHHQPQQHHLHHQPSSWDNNVAPRNIAGRSRKGRSLFSLASSVRSLback to top mRNA from alignment at H-paniculata_contig6298:3737..11806- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6298.14071.1 ID=mRNA_H-paniculata_contig6298.14071.1|Name=mRNA_H-paniculata_contig6298.14071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8070bp|location=Sequence derived from alignment at H-paniculata_contig6298:3737..11806- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6298:3737..11806- >mRNA_H-paniculata_contig6298.14071.1 ID=mRNA_H-paniculata_contig6298.14071.1|Name=mRNA_H-paniculata_contig6298.14071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5178bp|location=Sequence derived from alignment at H-paniculata_contig6298:3737..11806- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |