mRNA_H-paniculata_contig6296.14069.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6296.14069.1
Unique NamemRNA_H-paniculata_contig6296.14069.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6296.14069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6296contigH-paniculata_contig6296:8696..11233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size305
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6296.14069.1prot_H-paniculata_contig6296.14069.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6296 8698..11233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930721.2997334-CDS-H-paniculata_contig6296:8697..87481622930721.2997334-CDS-H-paniculata_contig6296:8697..8748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 8698..8748 -
1691481422.2303743-CDS-H-paniculata_contig6296:8697..87481691481422.2303743-CDS-H-paniculata_contig6296:8697..8748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 8698..8748 -
1622930721.3253272-CDS-H-paniculata_contig6296:9179..93091622930721.3253272-CDS-H-paniculata_contig6296:9179..9309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 9180..9309 -
1691481422.2422755-CDS-H-paniculata_contig6296:9179..93091691481422.2422755-CDS-H-paniculata_contig6296:9179..9309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 9180..9309 -
1622930721.3478687-CDS-H-paniculata_contig6296:10001..100541622930721.3478687-CDS-H-paniculata_contig6296:10001..10054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 10002..10054 -
1691481422.2535558-CDS-H-paniculata_contig6296:10001..100541691481422.2535558-CDS-H-paniculata_contig6296:10001..10054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 10002..10054 -
1622930721.3689163-CDS-H-paniculata_contig6296:11164..112331622930721.3689163-CDS-H-paniculata_contig6296:11164..11233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 11165..11233 -
1691481422.269882-CDS-H-paniculata_contig6296:11164..112331691481422.269882-CDS-H-paniculata_contig6296:11164..11233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 11165..11233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6296.14069.1

>prot_H-paniculata_contig6296.14069.1 ID=prot_H-paniculata_contig6296.14069.1|Name=mRNA_H-paniculata_contig6296.14069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
RTHPLQLASGVEVMSHFRTGPYKAEAARAQVVRDLRDRARSFGLNSVDHP
GMDNEMFRVAVEGVLAQRRESVASSPRLGDAYTKVTEELRLARVDPNGTS
T
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mRNA from alignment at H-paniculata_contig6296:8696..11233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6296.14069.1 ID=mRNA_H-paniculata_contig6296.14069.1|Name=mRNA_H-paniculata_contig6296.14069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2538bp|location=Sequence derived from alignment at H-paniculata_contig6296:8696..11233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAACGCACCCGCTGCAACTAGCATCAGGCGTTGAGGTCATGTCGCACTT
CCGGACAGGACCTTACAAGGTAAAACTCTCGACTTTATACAGTATCATTT
TTTGGGGGAAGGATTAGATACAACAAGTTGCTCGTAGCATGGGATCTGCG
TTTGTTGGCGAAGGCTGAGAGCAGTAATTTAAGCACGACTAACTAACTAG
TGTAGATTGGAAGATGGTGGCGGTAGAACAGAAGCACCTAAGCGATGTAT
ATTTGAACATGTTGCGCTTGACTAGGGCCGTGCTGAAAATTCGAGGGAAA
TAGGTAAATTACGAGGACGCGATCGAGCACCTACCTATTCGTCGATCTCA
ACGTTGTCGACGGCGTGACGATATAGCGCTATCACTGTATCATAAATCAG
GTCCTGCATGTGCGCTATAACGTGTCATTGGGCTCTAAAACGTAAGATAC
CCGACAACGGTTTTTAATACTAACCCCTTTGAAACGTGCATTCCAAATTG
GGCACGACTGTTACCAATGTTTGAGCACAGCATCCACCTCCTGCTTTGCT
TGGATGATTTTATGTTTGCGAAAATGAAGTTAGAAAACCTCCTATGTACT
CACCGGATTTAGCAATGTACTTCTGTTTGGCGGTGGAAAATCGTCATGTA
TCTAAACCGGGTGCGACTATGCCACCGTATTTTTTGTGTTCGATTGTGTT
CGATTTCTGGTGAAAATGATTCTGTTTTCACAGAAAACTATAGATCTGGA
TAGGCCCGGGACTTCGTGAGTTGTGCGTGGCAAGGGGGATGCGCTCCTCG
GAGAAAAAGTACTGAGTTGCGGACCCAATCGTATTTTTTTGTCCGATATA
TTGGACTATCCGTTAGATCATTCAGTCAGCACTAACTGAGCGGCCTAACA
GGTAATCCACTCTATCGGACAAAAGGATGACATGTTGTGTCTTGCACTTT
CTGGGGTTACAGTTTCTTGTATTTATTCTTGAATGGCTGTGAACCCTCAA
CATCTCAGACTGCAAAAAGACGATCAGAGGTCAAGCACAAGGATAACGGT
ATCGTTCCTCGATGCCAGCGGTATCGATAAGTAAACGAAAATAACTGAAT
TAAACTATACGATGCGATACGATACACAATAGATGCAAACCTTGGATGTA
CCCTAAACAATCTGCACGCATCCCAACAGGCGGAGGCTGCGCGTGCACAG
GTGGTGAGGGATCTCAGGGACCGCGCCCGCAGGTACCCACAACAGTACCC
TTAGAGATAGGGAGCGCTGGGGCGGGGGGTAGGCCAATCATTGAAACGAG
TACAACGTCGAATCAAAACGAATCATCAACAGTTTTAAACAACTTTTTGA
TCGATTGTATTCGTCTCCAGAATAATATAATCTTGAAGTATATATATTCC
CAATAAATATGTCGACATCTACCAATCAATCCAGTTCCATCCCAAATAAT
GGTGTTTTGTCTTGCCAGCTATATTGCACCCCTGCACAAATACGAATATA
ATACAAACAGTTATCACAAAATTCTAAGTATTTGCCTAGGTTTCAGAAAG
AGTGGACACATAGAATAAAGTATCCACCCCTGTCCATTCCGTTTACGAGT
ATTTTAGCAGTCGTGGATGGCCCGGGGCACATGAAAATATGAGCTCATTC
TGACACCCAGGAAAATATTTTCAGTTTTTTGTGAAAACTATTTGTAAATA
TTCATATTTGTCCGGAAGGTGCTATGTTGCTGTAAAAGACACATAATCCG
CTGGAGCGCAATCCAACTGGGCGTGCTTTATCTTCCCACACACTATTATA
CCCCGCCCCCGTACTTCGCATGTCTGTATGTTGTACCCCTGTCCCTCCTA
GTCTACTGCACCCCACTCGTCGACCTTCGTTCCCTACCCTCCTCTCCGCT
CTACCTAAACACCGCTTCGAACAGCTTCGGCTTGAATAGCGTCGATCACC
CGGGTATGGACAATGAGATGTTTCGCGTGGCAGTGGAGGGCGTGTTGGCG
CAGCGACGGGAATCGGTGGCGTCTAGCCCCAGGTTGGGCGACGCTTATAC
TAAGGTGAGGATATGGTGTTGGTTCGGTTTGGTTCGGTTCGGTTCGGTTC
ACGCAATGACTTTTTACATCGTTTTTCCACGTGTGATATTACAGTTAGAT
TTTTCTTTGTTTCTTCAGTTTGAATTCTGAATGAATCGAATGATACCCAC
GTCTACTATTCTAGCATACGTCTTTTCCAAGCGTACGCGTAGAAGAGGGT
ATCGTAGCGGTGGATAATACGCGGGGTCTCACTAGCCGTTTCTGGTCCTC
TGTTATGCAATACCTGTTCGGGGTTGCCAGGCTTGGCTGACCTTCAGAAG
CACGGCCGTGTCCGGCAGTTTAGCCATTGTCCAAAGGCCTAACGCAGGAG
GTAGAGGAGAGGCTATTACGGGCCGCGGACTTGTCCGCAATTTCCACATC
TTGACCCCCTCGCCGGCGATTACTTTATTCCTCAGGTGACAGAAGAGCTC
CGGCTCGCGAGAGTCGACCCCAATGGCACCAGCACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6296:8696..11233-

>mRNA_H-paniculata_contig6296.14069.1 ID=mRNA_H-paniculata_contig6296.14069.1|Name=mRNA_H-paniculata_contig6296.14069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig6296:8696..11233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAACGCACCCGCTGCAACTAGCATCAGGCGTTGAGGTCATGTCGCACTT
CCGGACAGGACCTTACAAGAGAACGCACCCGCTGCAACTAGCATCAGGCG
TTGAGGTCATGTCGCACTTCCGGACAGGACCTTACAAGGCGGAGGCTGCG
CGTGCACAGGTGGTGAGGGATCTCAGGGACCGCGCCCGCAGGCGGAGGCT
GCGCGTGCACAGGTGGTGAGGGATCTCAGGGACCGCGCCCGCAGCTTCGG
CTTGAATAGCGTCGATCACCCGGGTATGGACAATGAGATGTTTCGCGTGG
CAGTGGAGGGCGTGTTGGCGCAGCGACGGGAATCGGTGGCGTCTAGCCCC
AGGTTGGGCGACGCTTATACTAAGCTTCGGCTTGAATAGCGTCGATCACC
CGGGTATGGACAATGAGATGTTTCGCGTGGCAGTGGAGGGCGTGTTGGCG
CAGCGACGGGAATCGGTGGCGTCTAGCCCCAGGTTGGGCGACGCTTATAC
TAAGGTGACAGAAGAGCTCCGGCTCGCGAGAGTCGACCCCAATGGCACCA
GCACGGTGACAGAAGAGCTCCGGCTCGCGAGAGTCGACCCCAATGGCACC
AGCACG
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