mRNA_H-paniculata_contig6296.14068.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6296.14068.1
Unique NamemRNA_H-paniculata_contig6296.14068.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6296.14068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6296contigH-paniculata_contig6296:6012..8652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size334
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6296.14068.1prot_H-paniculata_contig6296.14068.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6296 6013..8652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930721.1677144-CDS-H-paniculata_contig6296:6012..60341622930721.1677144-CDS-H-paniculata_contig6296:6012..6034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 6013..6034 -
1691481422.1774287-CDS-H-paniculata_contig6296:6012..60341691481422.1774287-CDS-H-paniculata_contig6296:6012..6034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 6013..6034 -
1622930721.1979957-CDS-H-paniculata_contig6296:6689..67601622930721.1979957-CDS-H-paniculata_contig6296:6689..6760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 6690..6760 -
1691481422.192041-CDS-H-paniculata_contig6296:6689..67601691481422.192041-CDS-H-paniculata_contig6296:6689..6760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 6690..6760 -
1622930721.2181988-CDS-H-paniculata_contig6296:7100..72881622930721.2181988-CDS-H-paniculata_contig6296:7100..7288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 7101..7288 -
1691481422.2029974-CDS-H-paniculata_contig6296:7100..72881691481422.2029974-CDS-H-paniculata_contig6296:7100..7288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 7101..7288 -
1622930721.236794-CDS-H-paniculata_contig6296:8600..86521622930721.236794-CDS-H-paniculata_contig6296:8600..8652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 8601..8652 -
1691481422.2193422-CDS-H-paniculata_contig6296:8600..86521691481422.2193422-CDS-H-paniculata_contig6296:8600..8652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6296 8601..8652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6296.14068.1

>prot_H-paniculata_contig6296.14068.1 ID=prot_H-paniculata_contig6296.14068.1|Name=mRNA_H-paniculata_contig6296.14068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
PGSSSSSRSSPAAAMGSVELAAAAAAASAATIPRGLSSDIRRSGRAAEEL
DSLVWRAGGANGAADGGHRSRNGYVGVDSKELLAMAKKTAEIDCEAFKRR
RSISEAAKAAD
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mRNA from alignment at H-paniculata_contig6296:6012..8652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6296.14068.1 ID=mRNA_H-paniculata_contig6296.14068.1|Name=mRNA_H-paniculata_contig6296.14068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2641bp|location=Sequence derived from alignment at H-paniculata_contig6296:6012..8652- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGGATCTTCTTCGTCGTCTAGGTCGTCGCCGGCTGCTGCTATGGGCTC
CGGTATGTGTGTGTGTTTATTTTCTGAAACTGGTTATCACATTTTACGTA
TATTATAATATGAACACCATTCATCCACTTAATCTCTGATAGATTAGAGC
AATTTCCACTTGACCTTGAAGGTATGGATGAAAACTAGTGCAAAATACTG
AATTCCTTGTTGAAGATTTTGTGTGCTACGAGTGTGCGCCTATATTTCTT
GTGTATCACGAGGAAAAGATTGGCGAAGGAGTTATGTGTGAGAGATTTAT
ATGGGCGGTCAGATAAAACACTACACGCTTGAAGCTGCTACTGTGTGCGA
CTCAGGACCATCAACCCTGATGTTACTCTTGCAACATATTTTCGAGTATA
TAGTTGGTAAAGTTCAACCGCCTGGGTACTACGGCGGCGTTACCTTCCGT
CTTTAAGCGCGTGGTACCCAGAGTTGCTGTGCTCGATGCTGTTGCCAGTT
GATGAAACTTTATTCCCCCCCCCTCTCGCAAGCGATTGTTTTCTAGTACA
TACCAGGCACGCTGGTACCTCCCGTCTCCTACCATGCAACGTCAACAGCC
CTATAGCCGCAATAGCCGAGAACGCTGCACCGGGGTGATAACGTTTTTCA
AACGCGATTGAGTACCTTGAAAACTGCCATACGGCGCTCCTGACTACGAA
AGGTATCTTGTTGAGAAAATCTCTCGGACGTCTGAAATCTTTCGATTCGA
TTGACAAGCTGGTTTTTTTCGACCGCGCAAGTAAGGTCTCCGTTCTCTAG
ATAATCTCATTTTGAAAAACGTTCGTGCCCCGGTGCGGTATCGCCAGGCA
TTCGGCACACAGCAAGCTTAAAGAGATATAGTCATAGATACCACTTTGCA
AATATCCACAATATAGTCGACATTGGCGAATACAGCTGTAAGTAGCCCTG
TACCCTGCTCTGACCTCATCAAAATACGTTCAATATCGTTTTGGGGATGG
AGAGGTCGAACGTATATCCCTGGATTGGCCAAGGGATGCCTGGATACCGT
CCCCTGAGTTTGTGGCTATGGTGATTCATTTTCCTCAACAATCGGCGTTC
TCGCGGCATACCGGTATATGGTCTAAGTGCCAAAATTTCAAAACTCGTTT
TTGTGCGTCATATTCCAGCCTGGCGTATCATTTTTGTTTTTAATCGTCAA
CCCGCAGGAGATACGCCGCTGCATGCCCCAAAATGCCGGACCAGAGTAGT
GGTACAAATCAAGCAACCTCGAAGCCATATCTTCATGGCAAGCATACACC
CCAGAGTAGCGCCGGTAACTCTACCTGGACTACTTCTTATTTTTCCTTTT
TTCTACGTCTTCAGTCGAATTGGCGGCGGCGGCGGCAGCGGCTTCGGCTG
CGACAATCCCGAGGGGGCTAAGCTCCGACATTCGGCGATCTGGGAGGGCG
GCAGAAGAATTAGACAGCTTAGTCTGGCGAGCCGGGGGGGCAAACGGCGC
GGCTGACGGCGGCCATAGAAGTAGAAACGGCTACGTGGGGGTTGATTCGA
AGGTGTGCTCTCCTCCAAGCAGGGGCAAGGAGGGGGGGGGGGTACTGATT
GATGGTTGATTGGCAGAGGGAAGAAGCAACGTGGTGAGGAAAAACGTTAT
ATCTATTTTTCATAATTTTAATCAGTCACCATGTAAAATGTTTGGAGTGT
CTAGTGGACAACGGGGCTGTTGCTACTACCCCCACTGAGGGTATTATTAT
CGCGGTGCTAAAAGGAGAGCAATGACACACAGGTGTAGAGAGAGAGAGCG
ATGCAATGTAACCATAGCCCAAGCCACCACTATCTTTGCTCTTGTCGTGG
CAAAATCATGAGTCGAAAGCAAACATAATTTGTGTCCTGCAGGAACTGCT
TGCCATGGCCAAGAAGACTGCCGAGATAGATTGCGAAGCGTTCAAGCGCC
GGCGGTCGATCAGGTGTGCTGGAAAAAAAGCATCTCACGACTTAGTCGAG
CATTGATTGTGTTTGTTTTGGTTCTACCCACCTTGAGCGTAACTTCTGAG
GTACGTTGTCTTGTTGATCACGGCTTCGACACATATAGATAAAAGATGGG
TTACTGGGGGGAAGAGGGAACGAGTCCTTGTGCCAGCAGCTAAAGGAGAG
TGCCACCGATAAACACGGTCTCATTTACTTGCTACAAGTCCCCGACGCTA
TCATTATTTCGTCATGCTTGACATTAATCCTTGTTGTCGTGCCCACCACC
GCAGCAGCAGTTCGATTAAAAGGTCGTTCGACGATAGGGCTGTCAGTCAC
TTTTGGAAAAGAACACACTCTCCCGAGAGCAACGGCACGAATATCTTGGA
CCGCACTAATTTTGTTGCATTTTCTTTTAATCGGTACGTGGAGCCAATTG
CTCATGGTTCAAGATTAAAAAAATCAATGCCAAATAGAGGGTGAGATAAA
GCCACTCCTAGAATTGACCCTTGTACACAAAGTGCTCTCCCTCCACCCCC
GATTGAATGACTGGACTAGCATGGCACACATACCGCCCCCGCGCTCTGTG
CTCGAGGAACGTATCGCCCGTGGGTACTCACTTCTTTTCCCGCATCTCCG
ACGTCCGGCCATCAACAGTGAAGCCGCAAAAGCAGCGGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig6296:6012..8652-

>mRNA_H-paniculata_contig6296.14068.1 ID=mRNA_H-paniculata_contig6296.14068.1|Name=mRNA_H-paniculata_contig6296.14068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig6296:6012..8652- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGGATCTTCTTCGTCGTCTAGGTCGTCGCCGGCTGCTGCTATGGGCTC
CGCCAGGATCTTCTTCGTCGTCTAGGTCGTCGCCGGCTGCTGCTATGGGC
TCCGTCGAATTGGCGGCGGCGGCGGCAGCGGCTTCGGCTGCGACAATCCC
GAGGGGGCTAAGCTCCGACATTCGGCGATCTGGGAGGGCGGCAGAAGAAT
TAGACAGCTTAGTCTGGCGAGCCGGGGGGGCAAACGGCGCGGCTGACGGC
GGCCATAGAAGTAGAAACGGCTACGTGGGGGTTGATTCGAAGTCGAATTG
GCGGCGGCGGCGGCAGCGGCTTCGGCTGCGACAATCCCGAGGGGGCTAAG
CTCCGACATTCGGCGATCTGGGAGGGCGGCAGAAGAATTAGACAGCTTAG
TCTGGCGAGCCGGGGGGGCAAACGGCGCGGCTGACGGCGGCCATAGAAGT
AGAAACGGCTACGTGGGGGTTGATTCGAAGGAACTGCTTGCCATGGCCAA
GAAGACTGCCGAGATAGATTGCGAAGCGTTCAAGCGCCGGCGGTCGATCA
GGAACTGCTTGCCATGGCCAAGAAGACTGCCGAGATAGATTGCGAAGCGT
TCAAGCGCCGGCGGTCGATCAGTGAAGCCGCAAAAGCAGCGGATTGAAGC
CGCAAAAGCAGCGGAT
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